Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_02130 and HEPCGN_02135 are separated by 743 nucleotides HEPCGN_02135 and HEPCGN_02140 are separated by 31 nucleotides
HEPCGN_02130: HEPCGN_02130 - lipoprotein, at 348,370 to 348,756
_02130
HEPCGN_02135: HEPCGN_02135 - hypothetical protein, at 349,500 to 349,703
_02135
HEPCGN_02140: HEPCGN_02140 - hypothetical protein, at 349,735 to 351,297
_02140
Position (kb) 349
350 Strain fitness (log2 ratio) -2
-1
0
1
2 at 348.639 kb on + strand, within HEPCGN_02130 at 348.665 kb on - strand, within HEPCGN_02130 at 348.665 kb on - strand, within HEPCGN_02130 at 348.665 kb on - strand, within HEPCGN_02130 at 348.665 kb on - strand, within HEPCGN_02130 at 348.718 kb on - strand at 348.863 kb on - strand at 348.900 kb on + strand at 348.901 kb on - strand at 348.947 kb on + strand at 349.050 kb on - strand at 349.101 kb on - strand at 349.102 kb on + strand at 349.102 kb on + strand at 349.103 kb on - strand at 349.103 kb on - strand at 349.121 kb on + strand at 349.127 kb on - strand at 349.131 kb on - strand at 349.136 kb on - strand at 349.646 kb on + strand, within HEPCGN_02135 at 350.346 kb on - strand, within HEPCGN_02140 at 350.422 kb on - strand, within HEPCGN_02140 at 350.432 kb on + strand, within HEPCGN_02140 at 350.544 kb on + strand, within HEPCGN_02140 at 350.560 kb on - strand, within HEPCGN_02140
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 348,639 + HEPCGN_02130 0.70 +0.2 348,665 - HEPCGN_02130 0.76 -0.4 348,665 - HEPCGN_02130 0.76 -0.3 348,665 - HEPCGN_02130 0.76 -0.0 348,665 - HEPCGN_02130 0.76 +0.5 348,718 - +0.7 348,863 - +1.8 348,900 + +0.3 348,901 - +0.1 348,947 + -0.1 349,050 - +0.1 349,101 - -0.3 349,102 + +0.2 349,102 + -0.1 349,103 - -0.1 349,103 - -1.1 349,121 + +0.4 349,127 - +0.1 349,131 - +0.1 349,136 - +0.3 349,646 + HEPCGN_02135 0.72 -0.6 350,346 - HEPCGN_02140 0.39 +1.3 350,422 - HEPCGN_02140 0.44 -0.4 350,432 + HEPCGN_02140 0.45 +0.8 350,544 + HEPCGN_02140 0.52 +1.2 350,560 - HEPCGN_02140 0.53 -2.4
Or see this region's nucleotide sequence