Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sucC and sucD overlap by 1 nucleotides sucD and HEPCGN_01325 are separated by 98 nucleotides
HEPCGN_01315: sucC - ADP-forming succinate--CoA ligase subunit beta, at 190,251 to 191,417
sucC
HEPCGN_01320: sucD - succinate--CoA ligase subunit alpha, at 191,417 to 192,286
sucD
HEPCGN_01325: HEPCGN_01325 - RNA-splicing ligase RtcB, at 192,385 to 193,782
_01325
Position (kb) 191
192
193 Strain fitness (log2 ratio) -2
-1
0
1
2 at 190.500 kb on + strand, within sucC at 190.501 kb on - strand, within sucC at 190.598 kb on + strand, within sucC at 190.599 kb on - strand, within sucC at 191.004 kb on + strand, within sucC at 191.004 kb on + strand, within sucC at 191.004 kb on + strand, within sucC at 191.005 kb on - strand, within sucC at 191.033 kb on + strand, within sucC at 191.303 kb on + strand at 191.303 kb on + strand at 191.304 kb on - strand at 191.351 kb on + strand at 191.415 kb on + strand at 191.416 kb on - strand at 191.434 kb on + strand at 191.435 kb on - strand at 191.450 kb on - strand at 191.630 kb on + strand, within sucD at 191.630 kb on + strand, within sucD at 191.630 kb on + strand, within sucD at 191.631 kb on - strand, within sucD at 191.631 kb on - strand, within sucD at 191.631 kb on - strand, within sucD at 191.671 kb on + strand, within sucD at 191.696 kb on - strand, within sucD at 191.728 kb on + strand, within sucD at 191.855 kb on - strand, within sucD at 191.891 kb on + strand, within sucD at 191.974 kb on + strand, within sucD at 192.114 kb on - strand, within sucD at 192.149 kb on - strand, within sucD at 192.324 kb on + strand at 192.370 kb on + strand at 192.370 kb on + strand at 192.371 kb on - strand at 192.371 kb on - strand at 192.371 kb on - strand at 192.371 kb on - strand at 192.479 kb on + strand at 192.657 kb on - strand, within HEPCGN_01325 at 192.756 kb on + strand, within HEPCGN_01325 at 192.756 kb on + strand, within HEPCGN_01325 at 192.757 kb on - strand, within HEPCGN_01325 at 192.805 kb on - strand, within HEPCGN_01325 at 192.805 kb on - strand, within HEPCGN_01325 at 192.814 kb on + strand, within HEPCGN_01325 at 192.815 kb on - strand, within HEPCGN_01325 at 192.815 kb on - strand, within HEPCGN_01325 at 192.883 kb on + strand, within HEPCGN_01325 at 192.918 kb on - strand, within HEPCGN_01325 at 192.939 kb on + strand, within HEPCGN_01325 at 192.939 kb on + strand, within HEPCGN_01325 at 192.940 kb on - strand, within HEPCGN_01325 at 193.107 kb on + strand, within HEPCGN_01325 at 193.191 kb on - strand, within HEPCGN_01325
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 190,500 + sucC HEPCGN_01315 0.21 -0.4 190,501 - sucC HEPCGN_01315 0.21 +2.5 190,598 + sucC HEPCGN_01315 0.30 -1.4 190,599 - sucC HEPCGN_01315 0.30 +0.6 191,004 + sucC HEPCGN_01315 0.65 -1.1 191,004 + sucC HEPCGN_01315 0.65 -0.7 191,004 + sucC HEPCGN_01315 0.65 -0.7 191,005 - sucC HEPCGN_01315 0.65 +0.8 191,033 + sucC HEPCGN_01315 0.67 +1.0 191,303 + -0.2 191,303 + +1.4 191,304 - -0.1 191,351 + -0.6 191,415 + -1.1 191,416 - -0.6 191,434 + -0.6 191,435 - -0.8 191,450 - -1.1 191,630 + sucD HEPCGN_01320 0.24 -0.5 191,630 + sucD HEPCGN_01320 0.24 -1.5 191,630 + sucD HEPCGN_01320 0.24 -1.2 191,631 - sucD HEPCGN_01320 0.25 -1.4 191,631 - sucD HEPCGN_01320 0.25 -0.7 191,631 - sucD HEPCGN_01320 0.25 -0.2 191,671 + sucD HEPCGN_01320 0.29 +1.2 191,696 - sucD HEPCGN_01320 0.32 -0.6 191,728 + sucD HEPCGN_01320 0.36 -1.7 191,855 - sucD HEPCGN_01320 0.50 -2.0 191,891 + sucD HEPCGN_01320 0.54 -1.5 191,974 + sucD HEPCGN_01320 0.64 -2.0 192,114 - sucD HEPCGN_01320 0.80 -0.4 192,149 - sucD HEPCGN_01320 0.84 -1.5 192,324 + -0.6 192,370 + +0.1 192,370 + -0.0 192,371 - +0.4 192,371 - -0.4 192,371 - -1.8 192,371 - +0.1 192,479 + +0.2 192,657 - HEPCGN_01325 0.19 +1.6 192,756 + HEPCGN_01325 0.27 -0.2 192,756 + HEPCGN_01325 0.27 -0.4 192,757 - HEPCGN_01325 0.27 -0.3 192,805 - HEPCGN_01325 0.30 -0.4 192,805 - HEPCGN_01325 0.30 -0.0 192,814 + HEPCGN_01325 0.31 +0.3 192,815 - HEPCGN_01325 0.31 -0.1 192,815 - HEPCGN_01325 0.31 +0.0 192,883 + HEPCGN_01325 0.36 +0.3 192,918 - HEPCGN_01325 0.38 +0.1 192,939 + HEPCGN_01325 0.40 -0.9 192,939 + HEPCGN_01325 0.40 -0.9 192,940 - HEPCGN_01325 0.40 +0.6 193,107 + HEPCGN_01325 0.52 -2.3 193,191 - HEPCGN_01325 0.58 -0.1
Or see this region's nucleotide sequence