Strain Fitness in Escherichia coli ECOR38 around HEPCGN_25125

Experiment: JK38

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JK38
3,778,344	+	oppF	HEPCGN_25115	0.53	+0.2
3,778,345	-	oppF	HEPCGN_25115	0.53	-0.2
3,778,345	-	oppF	HEPCGN_25115	0.53	-0.1
3,778,365	+	oppF	HEPCGN_25115	0.55	-0.7
3,778,366	-	oppF	HEPCGN_25115	0.56	-0.7
3,778,436	+	oppF	HEPCGN_25115	0.62	-1.6
3,778,490	+	oppF	HEPCGN_25115	0.68	-0.2
3,778,490	+	oppF	HEPCGN_25115	0.68	+0.5
3,778,523	-	oppF	HEPCGN_25115	0.71	+0.1
3,778,553	-	oppF	HEPCGN_25115	0.74	+0.9
3,778,553	-	oppF	HEPCGN_25115	0.74	-0.7
3,778,585	+	oppF	HEPCGN_25115	0.77	+1.2
3,778,656	-	oppF	HEPCGN_25115	0.84	-1.6
3,778,819	+				+0.3
3,778,820	-				+0.4
3,778,922	-	cls	HEPCGN_25120	0.17	-0.4
3,778,922	-	cls	HEPCGN_25120	0.17	-0.3
3,779,134	+	cls	HEPCGN_25120	0.82	-1.3
3,779,188	+				-1.3
3,779,194	+				-1.0
3,779,201	+				-1.0
3,779,202	-				+0.8
3,779,209	+				-0.5
3,779,231	-				+0.1
3,779,333	-				+0.0
3,779,391	-	clsA	HEPCGN_25125	0.11	-0.1
3,779,421	-	clsA	HEPCGN_25125	0.13	-1.8
3,779,802	-	clsA	HEPCGN_25125	0.39	+0.0
3,779,829	-	clsA	HEPCGN_25125	0.41	-0.8
3,779,868	-	clsA	HEPCGN_25125	0.44	-1.6
3,779,984	-	clsA	HEPCGN_25125	0.52	+0.4
3,780,174	-	clsA	HEPCGN_25125	0.65	-0.8
3,780,327	+	clsA	HEPCGN_25125	0.75	-1.8
3,780,402	-	clsA	HEPCGN_25125	0.80	-2.5
3,780,420	-	clsA	HEPCGN_25125	0.82	-2.1
3,780,420	-	clsA	HEPCGN_25125	0.82	+0.2
3,780,425	+	clsA	HEPCGN_25125	0.82	+0.6
3,780,435	-	clsA	HEPCGN_25125	0.83	-0.3
3,780,502	-	clsA	HEPCGN_25125	0.87	-1.0
3,780,556	+				-2.1
3,780,561	-				-0.4
3,780,607	-				-1.5
3,780,622	-				+1.7
3,780,643	+				-1.2
3,780,675	-				-0.3
3,780,689	+				+0.0
3,780,796	-				+0.5
3,780,820	-				+0.7
3,780,824	+				-0.3
3,780,825	-				-0.3
3,780,927	+				+0.8
3,780,927	+				-0.1
3,780,972	+				-0.0
3,780,994	+				-0.2
3,781,000	-				-0.2
3,781,035	-				-1.7
3,781,165	-				-0.2
3,781,184	-				+1.7
3,781,244	-	kch	HEPCGN_25130	0.15	-0.9
3,781,599	+	kch	HEPCGN_25130	0.43	-0.3
3,781,599	+	kch	HEPCGN_25130	0.43	-0.3
3,781,600	-	kch	HEPCGN_25130	0.43	-0.6
3,781,600	-	kch	HEPCGN_25130	0.43	+0.2
3,781,665	+	kch	HEPCGN_25130	0.48	-0.4
3,781,665	+	kch	HEPCGN_25130	0.48	-1.7
3,781,665	+	kch	HEPCGN_25130	0.48	+0.5
3,781,666	-	kch	HEPCGN_25130	0.48	+0.6
3,781,666	-	kch	HEPCGN_25130	0.48	+0.0
3,781,666	-	kch	HEPCGN_25130	0.48	+0.6
3,781,666	-	kch	HEPCGN_25130	0.48	-0.1
3,781,666	-	kch	HEPCGN_25130	0.48	-0.1