Strain Fitness in Escherichia coli ECOR38 around HEPCGN_16505

Experiment: JK38

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JK38
2,046,443	+	yhdJ	HEPCGN_16495	0.57	+0.6
2,046,443	+	yhdJ	HEPCGN_16495	0.57	+0.3
2,046,444	-	yhdJ	HEPCGN_16495	0.57	+0.2
2,046,489	-	yhdJ	HEPCGN_16495	0.62	-0.2
2,046,489	-	yhdJ	HEPCGN_16495	0.62	-0.2
2,046,543	+	yhdJ	HEPCGN_16495	0.68	-1.2
2,046,576	-	yhdJ	HEPCGN_16495	0.72	-0.1
2,046,576	-	yhdJ	HEPCGN_16495	0.72	+0.0
2,046,694	-	yhdJ	HEPCGN_16495	0.85	+1.0
2,046,694	-	yhdJ	HEPCGN_16495	0.85	+2.5
2,046,721	+	yhdJ	HEPCGN_16495	0.88	+0.4
2,046,721	+	yhdJ	HEPCGN_16495	0.88	+0.6
2,046,721	+	yhdJ	HEPCGN_16495	0.88	+0.8
2,046,722	-	yhdJ	HEPCGN_16495	0.89	-0.7
2,046,946	+	fis	HEPCGN_16500	0.13	-1.3
2,046,947	-	fis	HEPCGN_16500	0.13	-2.7
2,047,054	-	fis	HEPCGN_16500	0.49	+1.3
2,047,093	-	fis	HEPCGN_16500	0.62	-1.7
2,047,188	-				+1.3
2,047,205	-				+0.9
2,047,250	-				-1.1
2,047,340	-	dusB	HEPCGN_16505	0.11	-3.0
2,047,356	-	dusB	HEPCGN_16505	0.13	-5.2
2,047,356	-	dusB	HEPCGN_16505	0.13	-3.0
2,047,388	-	dusB	HEPCGN_16505	0.16	-2.8
2,047,478	-	dusB	HEPCGN_16505	0.26	-3.2
2,047,478	-	dusB	HEPCGN_16505	0.26	-2.2
2,047,478	-	dusB	HEPCGN_16505	0.26	-3.0
2,047,527	+	dusB	HEPCGN_16505	0.31	-0.6
2,047,553	-	dusB	HEPCGN_16505	0.33	-3.2
2,047,629	-	dusB	HEPCGN_16505	0.41	-3.5
2,047,648	+	dusB	HEPCGN_16505	0.43	-2.1
2,047,749	-	dusB	HEPCGN_16505	0.54	-1.2
2,047,940	+	dusB	HEPCGN_16505	0.73	-1.8
2,047,940	+	dusB	HEPCGN_16505	0.73	-1.4
2,047,943	+	dusB	HEPCGN_16505	0.74	-1.4
2,048,108	-				-3.0
2,048,135	+				-2.6
2,048,136	-				-2.6
2,048,136	-				-1.1
2,048,179	+				-3.4
2,048,201	-				-2.8
2,048,213	+				+0.3
2,048,235	-				-1.4
2,048,237	-				-3.2
2,048,239	+				-1.6
2,048,334	-				-3.6
2,048,447	-				+0.1
2,048,450	+				-0.7
2,048,508	+				-0.8
2,048,526	-				+0.3
2,048,597	+				+0.7
2,048,597	+				+0.1
2,048,698	+	prmA	HEPCGN_16510	0.20	+0.1
2,048,699	-	prmA	HEPCGN_16510	0.20	-0.6
2,048,761	-	prmA	HEPCGN_16510	0.27	-0.3
2,048,974	-	prmA	HEPCGN_16510	0.51	+0.1
2,049,019	+	prmA	HEPCGN_16510	0.56	-0.4
2,049,020	-	prmA	HEPCGN_16510	0.56	+0.5
2,049,103	-	prmA	HEPCGN_16510	0.66	-0.5
2,049,103	-	prmA	HEPCGN_16510	0.66	+0.3