Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Arg_trna and fimZ are separated by 241 nucleotides fimZ and sfmF are separated by 2 nucleotides sfmF and fimH are separated by 101 nucleotides
HEPCGN_06410: Arg_trna - tRNA-Arg(tct), at 49 to 125
_trna
HEPCGN_06415: fimZ - fimbria biosynthesis transcriptional regulator FimZ, at 367 to 999
fimZ
HEPCGN_06420: sfmF - fimbria assembly protein, at 1,002 to 1,427
sfmF
HEPCGN_06425: fimH - type 1 fimbria D-mannose specific adhesin FimH, at 1,529 to 2,536
fimH
Position (kb) 0
1 Strain fitness (log2 ratio) -2
-1
0
1
2 at 0.020 kb on + strand at 0.147 kb on - strand at 0.248 kb on - strand at 0.249 kb on + strand at 0.362 kb on + strand at 0.367 kb on - strand at 0.420 kb on + strand at 0.537 kb on - strand, within fimZ at 0.594 kb on + strand, within fimZ at 0.815 kb on + strand, within fimZ at 1.075 kb on + strand, within sfmF at 1.166 kb on + strand, within sfmF at 1.169 kb on + strand, within sfmF at 1.299 kb on - strand, within sfmF at 1.299 kb on - strand, within sfmF at 1.336 kb on - strand, within sfmF at 1.336 kb on - strand, within sfmF at 1.346 kb on + strand, within sfmF at 1.392 kb on + strand at 1.482 kb on + strand at 1.499 kb on + strand at 1.502 kb on + strand at 1.502 kb on + strand at 1.507 kb on + strand at 1.548 kb on - strand at 1.598 kb on - strand at 1.603 kb on + strand at 1.678 kb on + strand, within fimH at 1.784 kb on + strand, within fimH at 1.784 kb on + strand, within fimH at 1.788 kb on + strand, within fimH at 1.789 kb on - strand, within fimH at 1.880 kb on - strand, within fimH at 1.883 kb on + strand, within fimH
Per-strain Table
Position Strand Gene LocusTag Fraction JK38 remove 20 + +0.1 147 - -0.3 248 - -0.1 249 + +0.8 362 + -0.7 367 - -1.1 420 + +0.6 537 - fimZ HEPCGN_06415 0.27 -1.2 594 + fimZ HEPCGN_06415 0.36 -1.2 815 + fimZ HEPCGN_06415 0.71 +0.1 1,075 + sfmF HEPCGN_06420 0.17 +0.3 1,166 + sfmF HEPCGN_06420 0.38 -0.5 1,169 + sfmF HEPCGN_06420 0.39 +0.0 1,299 - sfmF HEPCGN_06420 0.70 +0.7 1,299 - sfmF HEPCGN_06420 0.70 +0.8 1,336 - sfmF HEPCGN_06420 0.78 -0.0 1,336 - sfmF HEPCGN_06420 0.78 +0.3 1,346 + sfmF HEPCGN_06420 0.81 +0.9 1,392 + +1.9 1,482 + -0.2 1,499 + +0.1 1,502 + +0.8 1,502 + -0.9 1,507 + -0.5 1,548 - +0.3 1,598 - +0.1 1,603 + -2.2 1,678 + fimH HEPCGN_06425 0.15 -1.0 1,784 + fimH HEPCGN_06425 0.25 -0.3 1,784 + fimH HEPCGN_06425 0.25 -0.9 1,788 + fimH HEPCGN_06425 0.26 -0.4 1,789 - fimH HEPCGN_06425 0.26 +0.2 1,880 - fimH HEPCGN_06425 0.35 -0.3 1,883 + fimH HEPCGN_06425 0.35 +1.1
Or see this region's nucleotide sequence