Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hiuH and hprR are separated by 21 nucleotides hprR and hprS overlap by 1 nucleotides hprS and hchA are separated by 107 nucleotides
HEPCGN_03920: hiuH - hydroxyisourate hydrolase, at 690,115 to 690,528
hiuH
HEPCGN_03925: hprR - response regulator transcription factor HprR, at 690,550 to 691,332
hprR
HEPCGN_03930: hprS - two-component system sensor histidine kinase HprS, at 691,332 to 692,690
hprS
HEPCGN_03935: hchA - protein deglycase HchA, at 692,798 to 693,649
hchA
Position (kb) 691
692
693 Strain fitness (log2 ratio) -2
-1
0
1 at 690.508 kb on + strand at 690.511 kb on + strand at 690.535 kb on - strand at 690.590 kb on + strand at 690.590 kb on + strand at 690.591 kb on - strand at 690.638 kb on - strand, within hprR at 690.638 kb on - strand, within hprR at 690.813 kb on + strand, within hprR at 690.892 kb on - strand, within hprR at 691.004 kb on + strand, within hprR at 691.098 kb on + strand, within hprR at 691.098 kb on + strand, within hprR at 691.161 kb on - strand, within hprR at 691.218 kb on + strand, within hprR at 691.280 kb on + strand at 691.342 kb on + strand at 691.374 kb on - strand at 691.856 kb on - strand, within hprS at 691.929 kb on - strand, within hprS at 692.570 kb on - strand at 692.634 kb on + strand at 692.634 kb on + strand at 692.670 kb on - strand at 692.704 kb on + strand at 692.747 kb on + strand at 692.748 kb on - strand at 692.777 kb on + strand at 692.783 kb on - strand at 692.783 kb on - strand at 692.783 kb on - strand at 692.787 kb on + strand at 692.789 kb on + strand at 692.789 kb on + strand at 692.885 kb on - strand, within hchA at 692.893 kb on + strand, within hchA at 692.894 kb on - strand, within hchA at 692.894 kb on - strand, within hchA at 692.898 kb on - strand, within hchA at 692.985 kb on + strand, within hchA at 692.985 kb on + strand, within hchA at 692.986 kb on - strand, within hchA at 692.986 kb on - strand, within hchA at 693.137 kb on + strand, within hchA at 693.280 kb on + strand, within hchA at 693.281 kb on - strand, within hchA at 693.302 kb on + strand, within hchA at 693.343 kb on + strand, within hchA at 693.402 kb on + strand, within hchA at 693.402 kb on + strand, within hchA at 693.681 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK38 remove 690,508 + +0.9 690,511 + -0.4 690,535 - -0.1 690,590 + +1.0 690,590 + -1.4 690,591 - -0.1 690,638 - hprR HEPCGN_03925 0.11 +1.0 690,638 - hprR HEPCGN_03925 0.11 +0.4 690,813 + hprR HEPCGN_03925 0.34 +0.1 690,892 - hprR HEPCGN_03925 0.44 +0.2 691,004 + hprR HEPCGN_03925 0.58 -0.9 691,098 + hprR HEPCGN_03925 0.70 -0.2 691,098 + hprR HEPCGN_03925 0.70 +0.4 691,161 - hprR HEPCGN_03925 0.78 -0.0 691,218 + hprR HEPCGN_03925 0.85 +0.7 691,280 + -1.3 691,342 + -2.3 691,374 - -0.1 691,856 - hprS HEPCGN_03930 0.39 -1.3 691,929 - hprS HEPCGN_03930 0.44 -1.0 692,570 - +0.0 692,634 + -0.7 692,634 + +0.2 692,670 - +0.1 692,704 + -0.2 692,747 + -0.5 692,748 - +1.1 692,777 + +0.1 692,783 - +1.6 692,783 - +0.9 692,783 - +1.5 692,787 + +1.0 692,789 + -0.4 692,789 + +0.0 692,885 - hchA HEPCGN_03935 0.10 -0.8 692,893 + hchA HEPCGN_03935 0.11 -1.4 692,894 - hchA HEPCGN_03935 0.11 +0.1 692,894 - hchA HEPCGN_03935 0.11 -0.3 692,898 - hchA HEPCGN_03935 0.12 +0.5 692,985 + hchA HEPCGN_03935 0.22 -1.7 692,985 + hchA HEPCGN_03935 0.22 +1.3 692,986 - hchA HEPCGN_03935 0.22 +0.3 692,986 - hchA HEPCGN_03935 0.22 -0.6 693,137 + hchA HEPCGN_03935 0.40 -0.4 693,280 + hchA HEPCGN_03935 0.57 -0.7 693,281 - hchA HEPCGN_03935 0.57 -0.6 693,302 + hchA HEPCGN_03935 0.59 -0.1 693,343 + hchA HEPCGN_03935 0.64 -0.3 693,402 + hchA HEPCGN_03935 0.71 +0.2 693,402 + hchA HEPCGN_03935 0.71 -0.2 693,681 - -0.3
Or see this region's nucleotide sequence