Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_03885 and HEPCGN_03890 overlap by 4 nucleotides HEPCGN_03890 and HEPCGN_03895 are separated by 9 nucleotides HEPCGN_03895 and HEPCGN_03900 are separated by 329 nucleotides
HEPCGN_03885: HEPCGN_03885 - prophage tail fiber N-terminal domain-containing protein, at 683,748 to 685,805
_03885
HEPCGN_03890: HEPCGN_03890 - hypothetical protein, at 685,802 to 686,080
_03890
HEPCGN_03895: HEPCGN_03895 - hypothetical protein, at 686,090 to 686,377
_03895
HEPCGN_03900: HEPCGN_03900 - tRNA-Xxx, at 686,707 to 686,788
_03900
Position (kb) 686
687 Strain fitness (log2 ratio) -1
0
1 at 685.921 kb on + strand, within HEPCGN_03890 at 685.983 kb on - strand, within HEPCGN_03890 at 686.084 kb on + strand at 686.140 kb on - strand, within HEPCGN_03895 at 686.389 kb on - strand at 686.401 kb on + strand at 686.486 kb on - strand at 686.505 kb on - strand at 686.642 kb on + strand at 686.679 kb on + strand at 686.680 kb on - strand at 686.847 kb on + strand at 686.847 kb on + strand at 686.958 kb on + strand at 687.278 kb on + strand at 687.278 kb on + strand at 687.298 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK38 remove 685,921 + HEPCGN_03890 0.43 +0.6 685,983 - HEPCGN_03890 0.65 -0.3 686,084 + -0.1 686,140 - HEPCGN_03895 0.17 -1.4 686,389 - +0.2 686,401 + -0.8 686,486 - +0.7 686,505 - -0.4 686,642 + +0.4 686,679 + +0.3 686,680 - -1.2 686,847 + -0.7 686,847 + -0.2 686,958 + -0.3 687,278 + +1.0 687,278 + +1.0 687,298 - -1.1
Or see this region's nucleotide sequence