Strain Fitness in Escherichia coli ECOR38 around HEPCGN_21335

Experiment: JK38

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JK38
3,018,915	+	cysP	HEPCGN_21325	0.83	+0.4
3,018,915	+	cysP	HEPCGN_21325	0.83	+0.4
3,018,915	+	cysP	HEPCGN_21325	0.83	-0.4
3,018,916	-	cysP	HEPCGN_21325	0.84	-0.8
3,019,080	+				-0.8
3,019,080	+				-0.7
3,019,125	+				+0.9
3,019,221	-	cysT	HEPCGN_21330	0.17	+0.2
3,019,260	-	cysT	HEPCGN_21330	0.21	+0.1
3,019,493	+	cysT	HEPCGN_21330	0.49	+1.1
3,019,493	+	cysT	HEPCGN_21330	0.49	+0.3
3,019,493	+	cysT	HEPCGN_21330	0.49	+0.4
3,019,493	+	cysT	HEPCGN_21330	0.49	-2.2
3,019,494	-	cysT	HEPCGN_21330	0.49	-1.1
3,019,494	-	cysT	HEPCGN_21330	0.49	-0.9
3,019,494	-	cysT	HEPCGN_21330	0.49	-0.3
3,019,495	+	cysT	HEPCGN_21330	0.50	-0.1
3,019,495	+	cysT	HEPCGN_21330	0.50	-0.5
3,019,496	-	cysT	HEPCGN_21330	0.50	+1.9
3,019,528	+	cysT	HEPCGN_21330	0.53	+1.7
3,019,529	-	cysT	HEPCGN_21330	0.54	-0.1
3,019,589	+	cysT	HEPCGN_21330	0.61	+0.9
3,019,906	-				-0.2
3,019,906	-				+0.7
3,020,275	+	cysW	HEPCGN_21335	0.41	-0.8
3,020,276	-	cysW	HEPCGN_21335	0.41	+1.6
3,020,276	-	cysW	HEPCGN_21335	0.41	+0.5
3,020,287	+	cysW	HEPCGN_21335	0.42	-0.0
3,020,329	-	cysW	HEPCGN_21335	0.47	+0.2
3,020,329	-	cysW	HEPCGN_21335	0.47	-0.7
3,020,329	-	cysW	HEPCGN_21335	0.47	+0.4
3,020,340	+	cysW	HEPCGN_21335	0.49	+0.6
3,020,423	+	cysW	HEPCGN_21335	0.58	+0.2
3,020,424	-	cysW	HEPCGN_21335	0.58	-0.9
3,020,528	-	cysW	HEPCGN_21335	0.70	+0.8
3,020,650	+	cysW	HEPCGN_21335	0.84	+0.7
3,020,651	-	cysW	HEPCGN_21335	0.84	+0.1
3,020,804	-				-0.4
3,020,839	+				+1.0
3,020,839	+				-1.1
3,020,840	-				-1.7
3,021,296	-	cysA	HEPCGN_21340	0.47	-0.5
3,021,388	-	cysA	HEPCGN_21340	0.55	-0.7
3,021,388	-	cysA	HEPCGN_21340	0.55	+0.3
3,021,487	+	cysA	HEPCGN_21340	0.64	+1.0
3,021,568	+	cysA	HEPCGN_21340	0.72	-0.4
3,021,569	-	cysA	HEPCGN_21340	0.72	-2.4
3,021,569	-	cysA	HEPCGN_21340	0.72	-0.3
3,021,579	-	cysA	HEPCGN_21340	0.73	+0.3
3,021,579	-	cysA	HEPCGN_21340	0.73	-0.8
3,021,666	+	cysA	HEPCGN_21340	0.81	-0.2
3,021,667	-	cysA	HEPCGN_21340	0.81	+0.1
3,021,693	-	cysA	HEPCGN_21340	0.83	+0.1
3,021,693	-	cysA	HEPCGN_21340	0.83	-0.1
3,021,702	+	cysA	HEPCGN_21340	0.84	-0.8
3,021,725	+	cysA	HEPCGN_21340	0.86	-0.4
3,021,725	+	cysA	HEPCGN_21340	0.86	-1.5