Strain Fitness in Escherichia coli ECOR38 around HEPCGN_19775

Experiment: JK38

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JK38
2,707,759	+	hycC	HEPCGN_19770	0.46	+1.2
2,707,759	+	hycC	HEPCGN_19770	0.46	+0.2
2,707,759	+	hycC	HEPCGN_19770	0.46	+0.7
2,707,759	+	hycC	HEPCGN_19770	0.46	-0.4
2,707,759	+	hycC	HEPCGN_19770	0.46	+0.2
2,707,910	-	hycC	HEPCGN_19770	0.55	+0.3
2,708,015	-	hycC	HEPCGN_19770	0.60	+0.3
2,708,092	+	hycC	HEPCGN_19770	0.64	-0.4
2,708,093	-	hycC	HEPCGN_19770	0.65	+0.1
2,708,096	+	hycC	HEPCGN_19770	0.65	-0.0
2,708,096	+	hycC	HEPCGN_19770	0.65	-0.0
2,708,203	+	hycC	HEPCGN_19770	0.71	+0.1
2,708,203	+	hycC	HEPCGN_19770	0.71	-0.2
2,708,292	+	hycC	HEPCGN_19770	0.75	-0.1
2,708,292	+	hycC	HEPCGN_19770	0.75	+0.1
2,708,293	-	hycC	HEPCGN_19770	0.75	+0.5
2,708,322	+	hycC	HEPCGN_19770	0.77	+0.4
2,708,374	-	hycC	HEPCGN_19770	0.80	+1.6
2,708,396	-	hycC	HEPCGN_19770	0.81	-0.8
2,708,754	-				-0.8
2,708,754	-				+0.6
2,708,839	-	hycD	HEPCGN_19775	0.10	+0.0
2,708,870	-	hycD	HEPCGN_19775	0.14	+0.2
2,708,947	+	hycD	HEPCGN_19775	0.22	-0.0
2,709,041	+	hycD	HEPCGN_19775	0.32	+0.2
2,709,041	+	hycD	HEPCGN_19775	0.32	-1.2
2,709,042	-	hycD	HEPCGN_19775	0.32	-0.7
2,709,042	-	hycD	HEPCGN_19775	0.32	-1.0
2,709,235	+	hycD	HEPCGN_19775	0.53	-1.1
2,709,597	+				+0.2
2,709,598	-				-0.1
2,709,609	+				+0.7
2,709,639	-				+0.9
2,709,711	+				-0.1
2,709,804	+				+0.3
2,709,805	-				-1.0
2,709,805	-				-0.4
2,709,831	+				+0.0
2,709,835	-				-0.3
2,709,870	-	hycE	HEPCGN_19780	0.11	-0.2
2,709,910	-	hycE	HEPCGN_19780	0.13	+0.1
2,709,910	-	hycE	HEPCGN_19780	0.13	-0.3
2,709,984	+	hycE	HEPCGN_19780	0.18	+3.6
2,709,985	-	hycE	HEPCGN_19780	0.18	+0.6
2,710,047	+	hycE	HEPCGN_19780	0.21	-0.1
2,710,047	+	hycE	HEPCGN_19780	0.21	+0.1
2,710,130	+	hycE	HEPCGN_19780	0.26	+0.1
2,710,131	-	hycE	HEPCGN_19780	0.26	-0.1
2,710,170	-	hycE	HEPCGN_19780	0.28	+0.1
2,710,186	-	hycE	HEPCGN_19780	0.29	-1.9
2,710,186	-	hycE	HEPCGN_19780	0.29	+0.2
2,710,326	+	hycE	HEPCGN_19780	0.38	+0.3
2,710,326	+	hycE	HEPCGN_19780	0.38	-1.3
2,710,326	+	hycE	HEPCGN_19780	0.38	+0.3
2,710,327	-	hycE	HEPCGN_19780	0.38	-0.5
2,710,437	+	hycE	HEPCGN_19780	0.44	-0.6
2,710,437	+	hycE	HEPCGN_19780	0.44	-0.9
2,710,440	-	hycE	HEPCGN_19780	0.44	-0.0
2,710,586	+	hycE	HEPCGN_19780	0.53	+1.1