Strain Fitness in Escherichia coli ECOR38 around HEPCGN_08095

Experiment: JK38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaE and rnhB are separated by 36 nucleotidesrnhB and lpxB overlap by 4 nucleotides HEPCGN_08090: dnaE - DNA polymerase III subunit alpha, at 351,584 to 355,066 dnaE HEPCGN_08095: rnhB - ribonuclease HII, at 355,103 to 355,699 rnhB HEPCGN_08100: lpxB - lipid-A-disaccharide synthase, at 355,696 to 356,844 lpxB Position (kb) 355 356Strain fitness (log2 ratio) -1 0 1 2at 355.087 kb on - strandat 355.087 kb on - strandat 355.390 kb on - strand, within rnhB

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Per-strain Table

Position Strand Gene LocusTag Fraction JK38
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355,087 - -0.3
355,087 - +0.2
355,390 - rnhB HEPCGN_08095 0.48 +2.2

Or see this region's nucleotide sequence