Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_04415 and HEPCGN_04420 are separated by 21 nucleotides HEPCGN_04420 and HEPCGN_04425 are separated by 71 nucleotides HEPCGN_04425 and HEPCGN_04430 are separated by 89 nucleotides HEPCGN_04430 and HEPCGN_04435 are separated by 15 nucleotides HEPCGN_04435 and HEPCGN_04440 are separated by 29 nucleotides HEPCGN_04440 and xerD are separated by 131 nucleotides
HEPCGN_04415: HEPCGN_04415 - DUF4761 domain-containing protein, at 770,647 to 770,997
_04415
HEPCGN_04420: HEPCGN_04420 - DNA-binding protein, at 771,019 to 771,222
_04420
HEPCGN_04425: HEPCGN_04425 - hypothetical protein, at 771,294 to 771,431
_04425
HEPCGN_04430: HEPCGN_04430 - transcriptional regulator, at 771,521 to 771,925
_04430
HEPCGN_04435: HEPCGN_04435 - Putative transmembrane protein, at 771,941 to 772,591
_04435
HEPCGN_04440: HEPCGN_04440 - DUF2511 domain-containing protein, at 772,621 to 772,968
_04440
HEPCGN_04445: xerD - integrase, at 773,100 to 773,975
xerD
Position (kb) 771
772
773 Strain fitness (log2 ratio) -1
0
1 at 770.950 kb on + strand, within HEPCGN_04415 at 770.979 kb on + strand at 771.147 kb on + strand, within HEPCGN_04420 at 771.148 kb on - strand, within HEPCGN_04420 at 771.178 kb on + strand, within HEPCGN_04420 at 771.182 kb on + strand, within HEPCGN_04420 at 771.183 kb on - strand, within HEPCGN_04420 at 771.183 kb on - strand, within HEPCGN_04420 at 771.201 kb on + strand, within HEPCGN_04420 at 771.211 kb on + strand at 771.213 kb on + strand at 771.451 kb on + strand at 771.453 kb on + strand at 771.466 kb on + strand at 771.865 kb on + strand, within HEPCGN_04430 at 771.902 kb on + strand at 771.919 kb on + strand at 771.929 kb on + strand at 772.011 kb on + strand, within HEPCGN_04435 at 772.099 kb on + strand, within HEPCGN_04435 at 772.138 kb on + strand, within HEPCGN_04435 at 772.198 kb on + strand, within HEPCGN_04435 at 772.208 kb on - strand, within HEPCGN_04435 at 772.285 kb on + strand, within HEPCGN_04435 at 772.296 kb on + strand, within HEPCGN_04435 at 772.296 kb on + strand, within HEPCGN_04435 at 772.303 kb on - strand, within HEPCGN_04435 at 772.360 kb on + strand, within HEPCGN_04435 at 772.394 kb on - strand, within HEPCGN_04435 at 772.643 kb on + strand at 772.737 kb on + strand, within HEPCGN_04440 at 772.801 kb on - strand, within HEPCGN_04440 at 772.875 kb on + strand, within HEPCGN_04440 at 772.893 kb on + strand, within HEPCGN_04440 at 772.938 kb on + strand at 772.956 kb on - strand at 772.963 kb on - strand at 773.181 kb on + strand at 773.288 kb on + strand, within xerD at 773.376 kb on + strand, within xerD at 773.380 kb on + strand, within xerD at 773.380 kb on + strand, within xerD at 773.380 kb on + strand, within xerD at 773.381 kb on - strand, within xerD at 773.491 kb on + strand, within xerD
Per-strain Table
Position Strand Gene LocusTag Fraction JK38 remove 770,950 + HEPCGN_04415 0.86 +0.2 770,979 + -0.3 771,147 + HEPCGN_04420 0.63 -0.2 771,148 - HEPCGN_04420 0.63 -0.1 771,178 + HEPCGN_04420 0.78 +0.3 771,182 + HEPCGN_04420 0.80 -0.4 771,183 - HEPCGN_04420 0.80 +0.3 771,183 - HEPCGN_04420 0.80 +0.5 771,201 + HEPCGN_04420 0.89 +0.3 771,211 + -0.7 771,213 + -0.4 771,451 + -0.0 771,453 + +0.3 771,466 + -0.5 771,865 + HEPCGN_04430 0.85 +0.4 771,902 + +0.1 771,919 + -1.3 771,929 + -0.0 772,011 + HEPCGN_04435 0.11 -0.9 772,099 + HEPCGN_04435 0.24 +0.2 772,138 + HEPCGN_04435 0.30 -0.8 772,198 + HEPCGN_04435 0.39 -0.2 772,208 - HEPCGN_04435 0.41 +0.4 772,285 + HEPCGN_04435 0.53 -0.9 772,296 + HEPCGN_04435 0.55 +1.0 772,296 + HEPCGN_04435 0.55 -0.9 772,303 - HEPCGN_04435 0.56 +0.2 772,360 + HEPCGN_04435 0.64 -0.2 772,394 - HEPCGN_04435 0.70 -1.1 772,643 + -0.6 772,737 + HEPCGN_04440 0.33 +0.2 772,801 - HEPCGN_04440 0.52 -0.2 772,875 + HEPCGN_04440 0.73 +0.3 772,893 + HEPCGN_04440 0.78 +0.2 772,938 + +0.5 772,956 - +0.6 772,963 - -0.8 773,181 + -1.0 773,288 + xerD HEPCGN_04445 0.21 -0.4 773,376 + xerD HEPCGN_04445 0.32 +0.7 773,380 + xerD HEPCGN_04445 0.32 +0.1 773,380 + xerD HEPCGN_04445 0.32 +0.2 773,380 + xerD HEPCGN_04445 0.32 -0.3 773,381 - xerD HEPCGN_04445 0.32 -0.1 773,491 + xerD HEPCGN_04445 0.45 -0.3
Or see this region's nucleotide sequence