Strain Fitness in Escherichia coli ECOR38 around HEPCGN_23620

Experiment: Bas05

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas05
3,520,378	-	ghrA	HEPCGN_23610	0.81	+0.5
3,520,480	+				-0.2
3,520,552	+				+0.9
3,520,555	+				-0.6
3,520,558	+				+0.1
3,520,611	+				+0.1
3,520,611	+				+0.2
3,520,611	+				+0.3
3,520,611	+				-0.9
3,520,612	-				-0.4
3,520,612	-				+1.4
3,520,612	-				-0.4
3,520,612	-				+0.4
3,520,612	-				+0.5
3,520,612	-				-0.1
3,520,632	+				+0.2
3,520,632	+				-0.6
3,520,632	+				+0.4
3,520,633	-				+0.0
3,520,633	-				-1.0
3,520,633	-				+0.1
3,520,638	+				+0.1
3,520,638	+				-0.0
3,520,639	-				-1.2
3,520,660	+				-0.0
3,520,660	+				+0.3
3,520,660	+				-0.1
3,520,660	+				+0.3
3,520,663	-				-1.0
3,520,678	+				-0.4
3,520,678	+				-0.6
3,520,679	-				-0.8
3,520,679	-				+0.7
3,520,782	+	ycdX	HEPCGN_23615	0.23	-0.5
3,520,950	+	ycdX	HEPCGN_23615	0.46	-0.1
3,520,950	+	ycdX	HEPCGN_23615	0.46	+1.8
3,520,992	+	ycdX	HEPCGN_23615	0.51	-1.4
3,520,993	-	ycdX	HEPCGN_23615	0.52	-0.4
3,520,994	+	ycdX	HEPCGN_23615	0.52	-0.3
3,520,994	+	ycdX	HEPCGN_23615	0.52	-0.2
3,520,995	-	ycdX	HEPCGN_23615	0.52	-2.0
3,520,997	+	ycdX	HEPCGN_23615	0.52	+0.2
3,520,997	+	ycdX	HEPCGN_23615	0.52	+0.6
3,520,998	-	ycdX	HEPCGN_23615	0.52	-0.2
3,520,998	-	ycdX	HEPCGN_23615	0.52	-0.7
3,521,027	+	ycdX	HEPCGN_23615	0.56	+0.2
3,521,028	-	ycdX	HEPCGN_23615	0.56	+0.0
3,521,034	+	ycdX	HEPCGN_23615	0.57	-1.2
3,521,086	-	ycdX	HEPCGN_23615	0.64	+0.6
3,521,229	+	ycdX	HEPCGN_23615	0.84	-1.1
3,521,351	+				+1.4
3,521,351	+				-0.4
3,521,355	-				+0.6
3,521,355	-				-0.7
3,521,368	+				-0.7
3,521,416	-				-0.8
3,521,540	+	ycdY	HEPCGN_23620	0.30	+0.1
3,521,563	-	ycdY	HEPCGN_23620	0.34	-0.9
3,521,610	-	ycdY	HEPCGN_23620	0.43	-0.7
3,521,840	+	ycdY	HEPCGN_23620	0.84	-0.6
3,521,882	+				-0.5
3,521,882	+				+0.6
3,521,882	+				+0.2
3,521,885	+				+0.3
3,521,926	-				-0.8
3,521,947	+				+0.1
3,522,036	+				+0.3
3,522,036	+				-0.4
3,522,036	+				+0.1
3,522,037	-				-0.1
3,522,037	-				+0.7
3,522,037	-				-1.8
3,522,064	+	ycdZ	HEPCGN_23625	0.12	-1.7
3,522,064	+	ycdZ	HEPCGN_23625	0.12	+0.0
3,522,065	-	ycdZ	HEPCGN_23625	0.13	-0.9
3,522,111	+	ycdZ	HEPCGN_23625	0.21	-0.3
3,522,111	+	ycdZ	HEPCGN_23625	0.21	+0.1
3,522,144	-	ycdZ	HEPCGN_23625	0.28	+0.3
3,522,230	-	ycdZ	HEPCGN_23625	0.44	-0.2
3,522,307	+	ycdZ	HEPCGN_23625	0.59	+0.4
3,522,307	+	ycdZ	HEPCGN_23625	0.59	+0.0
3,522,352	+	ycdZ	HEPCGN_23625	0.68	-0.2
3,522,402	+	ycdZ	HEPCGN_23625	0.77	-0.5
3,522,402	+	ycdZ	HEPCGN_23625	0.77	-1.3
3,522,548	+				-0.2
3,522,607	+				-1.5
3,522,608	-				+0.3
3,522,679	+	cgsG	HEPCGN_23630	0.11	+0.5
3,522,680	-	cgsG	HEPCGN_23630	0.12	+0.0
3,522,689	-	cgsG	HEPCGN_23630	0.13	-0.3
3,522,689	-	cgsG	HEPCGN_23630	0.13	-0.7
3,522,689	-	cgsG	HEPCGN_23630	0.13	+0.8
3,522,757	-	cgsG	HEPCGN_23630	0.21	+0.2
3,522,757	-	cgsG	HEPCGN_23630	0.21	-0.2
3,522,787	-	cgsG	HEPCGN_23630	0.24	-0.2
3,522,794	-	cgsG	HEPCGN_23630	0.25	-0.5