Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_10785 and HEPCGN_10790 are separated by 269 nucleotides HEPCGN_10790 and HEPCGN_10795 are separated by 456 nucleotides HEPCGN_10795 and HEPCGN_10805 are separated by 218 nucleotides
HEPCGN_10785: HEPCGN_10785 - ligand-gated channel, at 901,982 to 903,952
_10785
HEPCGN_10790: HEPCGN_10790 - IS2 ORF2, at 904,222 to 904,467
_10790
HEPCGN_10795: HEPCGN_10795 - Transposase, at 904,924 to 905,184
_10795
HEPCGN_10805: HEPCGN_10805 - IS4-like element ISVsa5 family transposase, at 905,403 to 906,611
_10805
Position (kb) 904
905 Strain fitness (log2 ratio) -2
-1
0
1
2 at 903.446 kb on + strand, within HEPCGN_10785 at 903.446 kb on + strand, within HEPCGN_10785 at 903.592 kb on - strand, within HEPCGN_10785 at 903.592 kb on - strand, within HEPCGN_10785 at 903.592 kb on - strand, within HEPCGN_10785 at 903.651 kb on - strand, within HEPCGN_10785 at 903.754 kb on + strand, within HEPCGN_10785 at 903.868 kb on + strand at 903.910 kb on + strand at 903.914 kb on + strand at 903.914 kb on + strand at 903.915 kb on - strand at 903.938 kb on + strand at 903.946 kb on + strand at 903.948 kb on + strand at 903.948 kb on + strand at 903.949 kb on - strand at 904.061 kb on + strand at 904.061 kb on + strand at 904.061 kb on + strand at 904.120 kb on + strand at 904.120 kb on + strand at 904.120 kb on + strand at 904.121 kb on - strand at 904.170 kb on + strand at 904.170 kb on + strand at 904.171 kb on - strand at 904.178 kb on + strand at 904.178 kb on + strand at 904.179 kb on - strand at 904.198 kb on + strand at 904.214 kb on - strand at 904.236 kb on + strand at 904.262 kb on + strand, within HEPCGN_10790 at 904.263 kb on - strand, within HEPCGN_10790 at 904.263 kb on - strand, within HEPCGN_10790 at 904.286 kb on - strand, within HEPCGN_10790 at 904.462 kb on + strand at 904.493 kb on + strand at 904.522 kb on - strand at 904.643 kb on + strand at 904.644 kb on - strand at 904.678 kb on - strand at 904.734 kb on + strand at 904.735 kb on - strand at 904.747 kb on - strand at 904.783 kb on + strand at 904.792 kb on + strand at 904.793 kb on - strand at 904.809 kb on + strand at 904.809 kb on + strand at 904.809 kb on + strand at 904.907 kb on + strand at 904.916 kb on + strand at 904.926 kb on - strand at 905.034 kb on + strand, within HEPCGN_10795 at 905.092 kb on - strand, within HEPCGN_10795 at 905.125 kb on - strand, within HEPCGN_10795 at 905.184 kb on + strand at 905.185 kb on - strand at 905.185 kb on - strand at 905.185 kb on - strand at 905.185 kb on - strand at 905.185 kb on - strand at 905.186 kb on + strand at 905.186 kb on + strand at 905.187 kb on - strand at 905.208 kb on + strand at 905.214 kb on - strand at 905.260 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 903,446 + HEPCGN_10785 0.74 +0.3 903,446 + HEPCGN_10785 0.74 +0.3 903,592 - HEPCGN_10785 0.82 +0.3 903,592 - HEPCGN_10785 0.82 +0.8 903,592 - HEPCGN_10785 0.82 +0.7 903,651 - HEPCGN_10785 0.85 +0.1 903,754 + HEPCGN_10785 0.90 +0.0 903,868 + +0.4 903,910 + +0.8 903,914 + +0.1 903,914 + -0.2 903,915 - +0.7 903,938 + -1.0 903,946 + -0.0 903,948 + -0.1 903,948 + +0.6 903,949 - +0.5 904,061 + +0.0 904,061 + -0.4 904,061 + -0.2 904,120 + -0.1 904,120 + +0.6 904,120 + +0.0 904,121 - -0.1 904,170 + -0.1 904,170 + -0.9 904,171 - -0.0 904,178 + +0.2 904,178 + -0.5 904,179 - +1.0 904,198 + +0.3 904,214 - -2.5 904,236 + +0.1 904,262 + HEPCGN_10790 0.16 -0.5 904,263 - HEPCGN_10790 0.17 -0.7 904,263 - HEPCGN_10790 0.17 -0.5 904,286 - HEPCGN_10790 0.26 -0.6 904,462 + -0.2 904,493 + -0.3 904,522 - +0.0 904,643 + +0.4 904,644 - -0.4 904,678 - -0.0 904,734 + -0.9 904,735 - +0.1 904,747 - +0.1 904,783 + +0.3 904,792 + -1.4 904,793 - +0.9 904,809 + -0.2 904,809 + +2.4 904,809 + +1.7 904,907 + -0.5 904,916 + -1.4 904,926 - +0.2 905,034 + HEPCGN_10795 0.42 +0.2 905,092 - HEPCGN_10795 0.64 +0.2 905,125 - HEPCGN_10795 0.77 -0.5 905,184 + -0.2 905,185 - -0.3 905,185 - -0.3 905,185 - +1.2 905,185 - -1.0 905,185 - +0.4 905,186 + +0.2 905,186 + -1.2 905,187 - +0.0 905,208 + -0.1 905,214 - +0.2 905,260 + +0.5
Or see this region's nucleotide sequence