Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yafL and dinJ are separated by 185 nucleotides dinJ and yafQ are separated by 2 nucleotides yafQ and dpaA are separated by 155 nucleotides
HEPCGN_07855: yafL - putative endopeptidase YafL, at 311,698 to 312,471
yafL
HEPCGN_07860: dinJ - type II toxin-antitoxin system antitoxin DinJ, at 312,657 to 312,917
dinJ
HEPCGN_07865: yafQ - type II toxin-antitoxin system mRNA interferase toxin YafQ, at 312,920 to 313,198
yafQ
HEPCGN_07870: dpaA - peptidoglycan meso-diaminopimelic acid protein amidase, at 313,354 to 314,094
dpaA
Position (kb) 312
313 Strain fitness (log2 ratio) -2
-1
0
1 at 311.700 kb on - strand at 311.831 kb on + strand, within yafL at 311.841 kb on + strand, within yafL at 311.842 kb on - strand, within yafL at 311.936 kb on + strand, within yafL at 311.936 kb on + strand, within yafL at 311.936 kb on + strand, within yafL at 311.936 kb on + strand, within yafL at 311.937 kb on - strand, within yafL at 311.937 kb on - strand, within yafL at 312.047 kb on + strand, within yafL at 312.047 kb on + strand, within yafL at 312.048 kb on - strand, within yafL at 312.048 kb on - strand, within yafL at 312.103 kb on + strand, within yafL at 312.203 kb on - strand, within yafL at 312.294 kb on - strand, within yafL at 312.302 kb on - strand, within yafL at 312.355 kb on - strand, within yafL at 312.355 kb on - strand, within yafL at 312.355 kb on - strand, within yafL at 312.407 kb on - strand at 312.454 kb on + strand at 312.512 kb on - strand at 312.587 kb on + strand at 312.588 kb on - strand at 312.634 kb on + strand at 312.637 kb on - strand at 312.721 kb on + strand, within dinJ at 312.722 kb on - strand, within dinJ at 312.722 kb on - strand, within dinJ at 312.915 kb on + strand at 312.989 kb on - strand, within yafQ at 313.033 kb on + strand, within yafQ at 313.034 kb on - strand, within yafQ at 313.037 kb on - strand, within yafQ at 313.059 kb on - strand, within yafQ at 313.142 kb on - strand, within yafQ at 313.328 kb on - strand at 313.347 kb on - strand at 313.347 kb on - strand at 313.359 kb on + strand at 313.370 kb on + strand at 313.428 kb on + strand, within dpaA at 313.429 kb on - strand, within dpaA at 313.459 kb on - strand, within dpaA at 313.487 kb on - strand, within dpaA at 313.487 kb on - strand, within dpaA at 313.512 kb on + strand, within dpaA at 313.525 kb on + strand, within dpaA at 313.546 kb on + strand, within dpaA at 313.564 kb on + strand, within dpaA at 313.654 kb on - strand, within dpaA at 313.681 kb on + strand, within dpaA at 313.681 kb on + strand, within dpaA at 313.692 kb on + strand, within dpaA at 313.695 kb on + strand, within dpaA at 313.714 kb on + strand, within dpaA at 313.733 kb on - strand, within dpaA at 313.744 kb on + strand, within dpaA at 313.803 kb on + strand, within dpaA at 313.900 kb on - strand, within dpaA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 311,700 - +0.0 311,831 + yafL HEPCGN_07855 0.17 -0.8 311,841 + yafL HEPCGN_07855 0.18 -0.1 311,842 - yafL HEPCGN_07855 0.19 +0.3 311,936 + yafL HEPCGN_07855 0.31 +0.2 311,936 + yafL HEPCGN_07855 0.31 -0.1 311,936 + yafL HEPCGN_07855 0.31 +0.9 311,936 + yafL HEPCGN_07855 0.31 -0.4 311,937 - yafL HEPCGN_07855 0.31 -0.8 311,937 - yafL HEPCGN_07855 0.31 +0.0 312,047 + yafL HEPCGN_07855 0.45 +0.3 312,047 + yafL HEPCGN_07855 0.45 -0.3 312,048 - yafL HEPCGN_07855 0.45 +0.5 312,048 - yafL HEPCGN_07855 0.45 +0.9 312,103 + yafL HEPCGN_07855 0.52 +0.4 312,203 - yafL HEPCGN_07855 0.65 +0.1 312,294 - yafL HEPCGN_07855 0.77 +0.8 312,302 - yafL HEPCGN_07855 0.78 +0.6 312,355 - yafL HEPCGN_07855 0.85 -1.1 312,355 - yafL HEPCGN_07855 0.85 +0.9 312,355 - yafL HEPCGN_07855 0.85 -0.4 312,407 - +0.0 312,454 + -0.1 312,512 - +0.0 312,587 + -0.5 312,588 - -0.2 312,634 + -0.9 312,637 - +0.1 312,721 + dinJ HEPCGN_07860 0.25 -0.7 312,722 - dinJ HEPCGN_07860 0.25 -2.6 312,722 - dinJ HEPCGN_07860 0.25 -0.2 312,915 + +0.4 312,989 - yafQ HEPCGN_07865 0.25 -0.1 313,033 + yafQ HEPCGN_07865 0.41 -0.4 313,034 - yafQ HEPCGN_07865 0.41 +0.6 313,037 - yafQ HEPCGN_07865 0.42 +0.1 313,059 - yafQ HEPCGN_07865 0.50 -0.3 313,142 - yafQ HEPCGN_07865 0.80 -0.4 313,328 - +0.4 313,347 - +0.9 313,347 - -0.5 313,359 + -2.0 313,370 + +0.7 313,428 + dpaA HEPCGN_07870 0.10 +0.9 313,429 - dpaA HEPCGN_07870 0.10 +0.4 313,459 - dpaA HEPCGN_07870 0.14 -0.7 313,487 - dpaA HEPCGN_07870 0.18 +0.4 313,487 - dpaA HEPCGN_07870 0.18 -0.3 313,512 + dpaA HEPCGN_07870 0.21 +0.1 313,525 + dpaA HEPCGN_07870 0.23 -0.1 313,546 + dpaA HEPCGN_07870 0.26 -0.5 313,564 + dpaA HEPCGN_07870 0.28 -1.4 313,654 - dpaA HEPCGN_07870 0.40 -1.7 313,681 + dpaA HEPCGN_07870 0.44 +0.1 313,681 + dpaA HEPCGN_07870 0.44 -0.9 313,692 + dpaA HEPCGN_07870 0.46 -0.1 313,695 + dpaA HEPCGN_07870 0.46 +0.1 313,714 + dpaA HEPCGN_07870 0.49 -0.5 313,733 - dpaA HEPCGN_07870 0.51 -0.7 313,744 + dpaA HEPCGN_07870 0.53 -0.1 313,803 + dpaA HEPCGN_07870 0.61 +0.2 313,900 - dpaA HEPCGN_07870 0.74 -0.4
Or see this region's nucleotide sequence