Strain Fitness in Escherichia coli ECOR38 around HEPCGN_04835

Experiment: Bas05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpphA and yebW are separated by 0 nucleotidesyebW and yebV are separated by 20 nucleotidesyebV and rsmF are separated by 117 nucleotides HEPCGN_04825: pphA - protein-serine/threonine phosphatase, at 839,834 to 840,490 pphA HEPCGN_04830: yebW - Uncharacterized protein YebW, at 840,491 to 840,766 yebW HEPCGN_04835: yebV - Uncharacterized protein YebV, at 840,787 to 841,023 yebV HEPCGN_04840: rsmF - 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF, at 841,141 to 842,586 rsmF Position (kb) 840 841 842Strain fitness (log2 ratio) -2 -1 0 1 2at 839.829 kb on + strandat 839.907 kb on + strand, within pphAat 839.907 kb on + strand, within pphAat 839.908 kb on - strand, within pphAat 839.908 kb on - strand, within pphAat 839.908 kb on - strand, within pphAat 839.908 kb on - strand, within pphAat 839.973 kb on + strand, within pphAat 839.973 kb on + strand, within pphAat 839.978 kb on - strand, within pphAat 839.978 kb on - strand, within pphAat 840.061 kb on - strand, within pphAat 840.145 kb on + strand, within pphAat 840.161 kb on + strand, within pphAat 840.162 kb on - strand, within pphAat 840.162 kb on - strand, within pphAat 840.203 kb on + strand, within pphAat 840.203 kb on + strand, within pphAat 840.226 kb on - strand, within pphAat 840.281 kb on + strand, within pphAat 840.281 kb on + strand, within pphAat 840.282 kb on - strand, within pphAat 840.336 kb on + strand, within pphAat 840.365 kb on - strand, within pphAat 840.394 kb on + strand, within pphAat 840.395 kb on - strand, within pphAat 840.395 kb on - strand, within pphAat 840.434 kb on + strandat 840.437 kb on - strandat 840.437 kb on - strandat 840.488 kb on + strandat 840.533 kb on + strand, within yebWat 840.534 kb on - strand, within yebWat 840.586 kb on + strand, within yebWat 840.587 kb on - strand, within yebWat 840.591 kb on + strand, within yebWat 840.655 kb on - strand, within yebWat 840.877 kb on - strand, within yebVat 840.877 kb on - strand, within yebVat 840.909 kb on + strand, within yebVat 840.913 kb on + strand, within yebVat 841.088 kb on + strandat 841.259 kb on - strandat 841.271 kb on - strandat 841.407 kb on + strand, within rsmFat 841.616 kb on + strand, within rsmFat 841.630 kb on + strand, within rsmFat 841.735 kb on - strand, within rsmFat 841.735 kb on - strand, within rsmFat 841.788 kb on - strand, within rsmFat 841.873 kb on + strand, within rsmF

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
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839,829 + +0.1
839,907 + pphA HEPCGN_04825 0.11 +1.3
839,907 + pphA HEPCGN_04825 0.11 -0.6
839,908 - pphA HEPCGN_04825 0.11 +0.1
839,908 - pphA HEPCGN_04825 0.11 +0.7
839,908 - pphA HEPCGN_04825 0.11 +0.1
839,908 - pphA HEPCGN_04825 0.11 +0.4
839,973 + pphA HEPCGN_04825 0.21 +0.2
839,973 + pphA HEPCGN_04825 0.21 -0.8
839,978 - pphA HEPCGN_04825 0.22 +0.6
839,978 - pphA HEPCGN_04825 0.22 -0.1
840,061 - pphA HEPCGN_04825 0.35 -0.5
840,145 + pphA HEPCGN_04825 0.47 -0.2
840,161 + pphA HEPCGN_04825 0.50 +0.0
840,162 - pphA HEPCGN_04825 0.50 +1.2
840,162 - pphA HEPCGN_04825 0.50 +1.1
840,203 + pphA HEPCGN_04825 0.56 -1.7
840,203 + pphA HEPCGN_04825 0.56 +0.5
840,226 - pphA HEPCGN_04825 0.60 -0.2
840,281 + pphA HEPCGN_04825 0.68 +1.0
840,281 + pphA HEPCGN_04825 0.68 -0.1
840,282 - pphA HEPCGN_04825 0.68 -1.2
840,336 + pphA HEPCGN_04825 0.76 +0.0
840,365 - pphA HEPCGN_04825 0.81 +0.8
840,394 + pphA HEPCGN_04825 0.85 +0.2
840,395 - pphA HEPCGN_04825 0.85 +0.3
840,395 - pphA HEPCGN_04825 0.85 +0.2
840,434 + -0.7
840,437 - +0.1
840,437 - +0.2
840,488 + +1.8
840,533 + yebW HEPCGN_04830 0.15 -1.5
840,534 - yebW HEPCGN_04830 0.16 -0.4
840,586 + yebW HEPCGN_04830 0.34 +0.3
840,587 - yebW HEPCGN_04830 0.35 +1.2
840,591 + yebW HEPCGN_04830 0.36 +0.6
840,655 - yebW HEPCGN_04830 0.59 -0.7
840,877 - yebV HEPCGN_04835 0.38 -2.0
840,877 - yebV HEPCGN_04835 0.38 -0.1
840,909 + yebV HEPCGN_04835 0.51 +0.5
840,913 + yebV HEPCGN_04835 0.53 -2.7
841,088 + +0.2
841,259 - +0.9
841,271 - -0.0
841,407 + rsmF HEPCGN_04840 0.18 +0.6
841,616 + rsmF HEPCGN_04840 0.33 +0.2
841,630 + rsmF HEPCGN_04840 0.34 +0.3
841,735 - rsmF HEPCGN_04840 0.41 -0.0
841,735 - rsmF HEPCGN_04840 0.41 +0.8
841,788 - rsmF HEPCGN_04840 0.45 -0.8
841,873 + rsmF HEPCGN_04840 0.51 +0.2

Or see this region's nucleotide sequence