Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_02335 and HEPCGN_02340 are separated by 103 nucleotides HEPCGN_02340 and HEPCGN_02345 are separated by 111 nucleotides HEPCGN_02345 and HEPCGN_02350 overlap by 4 nucleotides
HEPCGN_02335: HEPCGN_02335 - transcriptional regulator, at 384,461 to 384,964
_02335
HEPCGN_02340: HEPCGN_02340 - LexA family transcriptional repressor, at 385,068 to 385,724
_02340
HEPCGN_02345: HEPCGN_02345 - hypothetical protein, at 385,836 to 386,063
_02345
HEPCGN_02350: HEPCGN_02350 - DNA-binding protein, at 386,060 to 386,767
_02350
Position (kb) 385
386
387 Strain fitness (log2 ratio) -1
0
1 at 384.854 kb on + strand, within HEPCGN_02335 at 384.854 kb on + strand, within HEPCGN_02335 at 384.855 kb on - strand, within HEPCGN_02335 at 384.896 kb on + strand, within HEPCGN_02335 at 384.897 kb on - strand, within HEPCGN_02335 at 384.897 kb on - strand, within HEPCGN_02335 at 386.005 kb on - strand, within HEPCGN_02345 at 386.006 kb on + strand, within HEPCGN_02345 at 386.007 kb on - strand, within HEPCGN_02345 at 386.007 kb on - strand, within HEPCGN_02345 at 386.007 kb on - strand, within HEPCGN_02345 at 386.137 kb on + strand, within HEPCGN_02350 at 386.137 kb on + strand, within HEPCGN_02350 at 386.253 kb on + strand, within HEPCGN_02350 at 386.253 kb on + strand, within HEPCGN_02350 at 386.254 kb on - strand, within HEPCGN_02350 at 386.332 kb on - strand, within HEPCGN_02350 at 386.498 kb on - strand, within HEPCGN_02350 at 386.557 kb on + strand, within HEPCGN_02350 at 386.558 kb on - strand, within HEPCGN_02350 at 386.721 kb on - strand at 386.749 kb on + strand at 386.858 kb on - strand at 386.858 kb on - strand at 386.873 kb on + strand at 386.873 kb on + strand at 386.874 kb on - strand at 386.874 kb on - strand at 386.874 kb on - strand at 386.874 kb on - strand at 386.941 kb on + strand at 387.035 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 384,854 + HEPCGN_02335 0.78 -0.8 384,854 + HEPCGN_02335 0.78 -0.8 384,855 - HEPCGN_02335 0.78 -0.2 384,896 + HEPCGN_02335 0.86 +1.4 384,897 - HEPCGN_02335 0.87 +0.0 384,897 - HEPCGN_02335 0.87 +0.2 386,005 - HEPCGN_02345 0.74 +0.1 386,006 + HEPCGN_02345 0.75 -1.3 386,007 - HEPCGN_02345 0.75 -0.1 386,007 - HEPCGN_02345 0.75 -1.4 386,007 - HEPCGN_02345 0.75 -0.7 386,137 + HEPCGN_02350 0.11 -1.1 386,137 + HEPCGN_02350 0.11 +0.1 386,253 + HEPCGN_02350 0.27 +0.1 386,253 + HEPCGN_02350 0.27 -0.3 386,254 - HEPCGN_02350 0.27 +0.0 386,332 - HEPCGN_02350 0.38 +0.6 386,498 - HEPCGN_02350 0.62 +0.2 386,557 + HEPCGN_02350 0.70 -0.1 386,558 - HEPCGN_02350 0.70 -0.1 386,721 - +1.1 386,749 + -0.8 386,858 - +0.6 386,858 - +0.7 386,873 + +0.5 386,873 + -0.7 386,874 - -0.4 386,874 - -0.6 386,874 - -0.6 386,874 - -0.2 386,941 + +0.1 387,035 + +0.1
Or see this region's nucleotide sequence