Experiment: Phage vio 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_01947 and OHPLBJKB_01948 are separated by 146 nucleotides OHPLBJKB_01948 and OHPLBJKB_01949 are separated by 112 nucleotides
OHPLBJKB_01947: OHPLBJKB_01947 - putative diguanylate cyclase CdgI, at 2,020,789 to 2,022,264
_01947
OHPLBJKB_01948: OHPLBJKB_01948 - hypothetical protein, at 2,022,411 to 2,023,694
_01948
OHPLBJKB_01949: OHPLBJKB_01949 - hypothetical protein, at 2,023,807 to 2,025,741
_01949
Position (kb)
2022
2023
2024 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2021.447 kb on - strand, within OHPLBJKB_01947 at 2021.455 kb on + strand, within OHPLBJKB_01947 at 2021.497 kb on - strand, within OHPLBJKB_01947 at 2021.595 kb on - strand, within OHPLBJKB_01947 at 2021.613 kb on + strand, within OHPLBJKB_01947 at 2021.868 kb on + strand, within OHPLBJKB_01947 at 2022.039 kb on - strand, within OHPLBJKB_01947 at 2022.064 kb on + strand, within OHPLBJKB_01947 at 2022.247 kb on - strand at 2022.337 kb on + strand at 2022.337 kb on + strand at 2022.347 kb on - strand at 2022.350 kb on - strand at 2022.513 kb on - strand at 2022.574 kb on + strand, within OHPLBJKB_01948 at 2022.574 kb on + strand, within OHPLBJKB_01948 at 2022.574 kb on + strand, within OHPLBJKB_01948 at 2022.575 kb on - strand, within OHPLBJKB_01948 at 2022.575 kb on - strand, within OHPLBJKB_01948 at 2022.575 kb on - strand, within OHPLBJKB_01948 at 2022.575 kb on - strand, within OHPLBJKB_01948 at 2022.581 kb on - strand, within OHPLBJKB_01948 at 2022.584 kb on - strand, within OHPLBJKB_01948 at 2022.677 kb on - strand, within OHPLBJKB_01948 at 2022.824 kb on - strand, within OHPLBJKB_01948 at 2022.824 kb on - strand, within OHPLBJKB_01948 at 2022.824 kb on - strand, within OHPLBJKB_01948 at 2022.842 kb on + strand, within OHPLBJKB_01948 at 2022.843 kb on - strand, within OHPLBJKB_01948 at 2022.843 kb on - strand, within OHPLBJKB_01948 at 2022.843 kb on - strand, within OHPLBJKB_01948 at 2022.844 kb on + strand, within OHPLBJKB_01948 at 2022.844 kb on + strand, within OHPLBJKB_01948 at 2022.844 kb on + strand, within OHPLBJKB_01948 at 2022.844 kb on + strand, within OHPLBJKB_01948 at 2022.845 kb on - strand, within OHPLBJKB_01948 at 2022.865 kb on + strand, within OHPLBJKB_01948 at 2022.865 kb on + strand, within OHPLBJKB_01948 at 2022.866 kb on - strand, within OHPLBJKB_01948 at 2022.877 kb on + strand, within OHPLBJKB_01948 at 2023.010 kb on + strand, within OHPLBJKB_01948 at 2023.038 kb on + strand, within OHPLBJKB_01948 at 2023.038 kb on + strand, within OHPLBJKB_01948 at 2023.039 kb on - strand, within OHPLBJKB_01948 at 2023.229 kb on + strand, within OHPLBJKB_01948 at 2023.229 kb on + strand, within OHPLBJKB_01948 at 2023.250 kb on + strand, within OHPLBJKB_01948 at 2023.250 kb on + strand, within OHPLBJKB_01948 at 2023.324 kb on + strand, within OHPLBJKB_01948 at 2023.520 kb on + strand, within OHPLBJKB_01948 at 2023.521 kb on - strand, within OHPLBJKB_01948 at 2023.604 kb on + strand at 2023.604 kb on + strand at 2023.616 kb on + strand at 2023.616 kb on + strand at 2023.617 kb on - strand at 2023.694 kb on + strand at 2023.695 kb on - strand at 2023.695 kb on - strand at 2023.705 kb on + strand at 2023.708 kb on + strand at 2023.709 kb on - strand at 2023.723 kb on + strand at 2023.724 kb on - strand at 2023.724 kb on - strand at 2023.724 kb on - strand at 2023.724 kb on - strand at 2023.729 kb on - strand at 2023.808 kb on + strand at 2023.808 kb on + strand at 2023.818 kb on + strand at 2023.818 kb on + strand at 2023.818 kb on + strand at 2023.818 kb on + strand at 2023.819 kb on - strand at 2023.833 kb on - strand at 2023.869 kb on - strand at 2023.885 kb on - strand at 2024.012 kb on + strand, within OHPLBJKB_01949 at 2024.013 kb on - strand, within OHPLBJKB_01949 at 2024.062 kb on + strand, within OHPLBJKB_01949 at 2024.216 kb on + strand, within OHPLBJKB_01949 at 2024.225 kb on + strand, within OHPLBJKB_01949 at 2024.270 kb on + strand, within OHPLBJKB_01949 at 2024.271 kb on - strand, within OHPLBJKB_01949 at 2024.307 kb on - strand, within OHPLBJKB_01949 at 2024.322 kb on - strand, within OHPLBJKB_01949 at 2024.342 kb on + strand, within OHPLBJKB_01949 at 2024.400 kb on - strand, within OHPLBJKB_01949 at 2024.431 kb on + strand, within OHPLBJKB_01949 at 2024.431 kb on + strand, within OHPLBJKB_01949 at 2024.525 kb on + strand, within OHPLBJKB_01949 at 2024.579 kb on + strand, within OHPLBJKB_01949 at 2024.579 kb on + strand, within OHPLBJKB_01949 at 2024.598 kb on - strand, within OHPLBJKB_01949
Per-strain Table
Position Strand Gene LocusTag Fraction Phage vio 3 remove 2,021,447 - OHPLBJKB_01947 0.45 +0.6 2,021,455 + OHPLBJKB_01947 0.45 +1.8 2,021,497 - OHPLBJKB_01947 0.48 +0.4 2,021,595 - OHPLBJKB_01947 0.55 +0.8 2,021,613 + OHPLBJKB_01947 0.56 -2.3 2,021,868 + OHPLBJKB_01947 0.73 +0.5 2,022,039 - OHPLBJKB_01947 0.85 -0.5 2,022,064 + OHPLBJKB_01947 0.86 +1.0 2,022,247 - -0.6 2,022,337 + +0.7 2,022,337 + +0.9 2,022,347 - +0.4 2,022,350 - +0.5 2,022,513 - -1.3 2,022,574 + OHPLBJKB_01948 0.13 +0.6 2,022,574 + OHPLBJKB_01948 0.13 -0.3 2,022,574 + OHPLBJKB_01948 0.13 +0.9 2,022,575 - OHPLBJKB_01948 0.13 -0.2 2,022,575 - OHPLBJKB_01948 0.13 +0.2 2,022,575 - OHPLBJKB_01948 0.13 +1.5 2,022,575 - OHPLBJKB_01948 0.13 -0.2 2,022,581 - OHPLBJKB_01948 0.13 +0.2 2,022,584 - OHPLBJKB_01948 0.13 +1.1 2,022,677 - OHPLBJKB_01948 0.21 +0.6 2,022,824 - OHPLBJKB_01948 0.32 +0.0 2,022,824 - OHPLBJKB_01948 0.32 +0.9 2,022,824 - OHPLBJKB_01948 0.32 -1.4 2,022,842 + OHPLBJKB_01948 0.34 -0.9 2,022,843 - OHPLBJKB_01948 0.34 -1.8 2,022,843 - OHPLBJKB_01948 0.34 +0.1 2,022,843 - OHPLBJKB_01948 0.34 +0.9 2,022,844 + OHPLBJKB_01948 0.34 -1.2 2,022,844 + OHPLBJKB_01948 0.34 -0.9 2,022,844 + OHPLBJKB_01948 0.34 -1.2 2,022,844 + OHPLBJKB_01948 0.34 -1.9 2,022,845 - OHPLBJKB_01948 0.34 +0.5 2,022,865 + OHPLBJKB_01948 0.35 +0.3 2,022,865 + OHPLBJKB_01948 0.35 -0.5 2,022,866 - OHPLBJKB_01948 0.35 -1.5 2,022,877 + OHPLBJKB_01948 0.36 +1.5 2,023,010 + OHPLBJKB_01948 0.47 +1.9 2,023,038 + OHPLBJKB_01948 0.49 +1.4 2,023,038 + OHPLBJKB_01948 0.49 -0.5 2,023,039 - OHPLBJKB_01948 0.49 +0.2 2,023,229 + OHPLBJKB_01948 0.64 -0.2 2,023,229 + OHPLBJKB_01948 0.64 +1.7 2,023,250 + OHPLBJKB_01948 0.65 +0.1 2,023,250 + OHPLBJKB_01948 0.65 +0.4 2,023,324 + OHPLBJKB_01948 0.71 +1.1 2,023,520 + OHPLBJKB_01948 0.86 +0.5 2,023,521 - OHPLBJKB_01948 0.86 +0.2 2,023,604 + -0.5 2,023,604 + -0.4 2,023,616 + -0.6 2,023,616 + +1.5 2,023,617 - +1.3 2,023,694 + -0.6 2,023,695 - -0.8 2,023,695 - -0.4 2,023,705 + -1.7 2,023,708 + +0.4 2,023,709 - -0.8 2,023,723 + +0.2 2,023,724 - +0.9 2,023,724 - +0.5 2,023,724 - +0.1 2,023,724 - +0.5 2,023,729 - -0.9 2,023,808 + +0.2 2,023,808 + -0.3 2,023,818 + +0.5 2,023,818 + +0.1 2,023,818 + -1.1 2,023,818 + +1.4 2,023,819 - +0.3 2,023,833 - -0.2 2,023,869 - -0.6 2,023,885 - +1.5 2,024,012 + OHPLBJKB_01949 0.11 +0.1 2,024,013 - OHPLBJKB_01949 0.11 -0.7 2,024,062 + OHPLBJKB_01949 0.13 +0.1 2,024,216 + OHPLBJKB_01949 0.21 -0.3 2,024,225 + OHPLBJKB_01949 0.22 +0.2 2,024,270 + OHPLBJKB_01949 0.24 +0.5 2,024,271 - OHPLBJKB_01949 0.24 +0.0 2,024,307 - OHPLBJKB_01949 0.26 -0.1 2,024,322 - OHPLBJKB_01949 0.27 +0.3 2,024,342 + OHPLBJKB_01949 0.28 -1.6 2,024,400 - OHPLBJKB_01949 0.31 -0.1 2,024,431 + OHPLBJKB_01949 0.32 -0.1 2,024,431 + OHPLBJKB_01949 0.32 -0.9 2,024,525 + OHPLBJKB_01949 0.37 -0.3 2,024,579 + OHPLBJKB_01949 0.40 +0.8 2,024,579 + OHPLBJKB_01949 0.40 -1.7 2,024,598 - OHPLBJKB_01949 0.41 -0.1
Or see this region's nucleotide sequence