Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02571

Experiment: Phage Lil 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02569 and OHPLBJKB_02570 are separated by 2 nucleotidesOHPLBJKB_02570 and OHPLBJKB_02571 are separated by 119 nucleotidesOHPLBJKB_02571 and OHPLBJKB_02572 are separated by 87 nucleotidesOHPLBJKB_02572 and OHPLBJKB_02573 are separated by 210 nucleotides OHPLBJKB_02569: OHPLBJKB_02569 - Endolytic murein transglycosylase, at 2,683,830 to 2,684,852 _02569 OHPLBJKB_02570: OHPLBJKB_02570 - Aminodeoxychorismate lyase, at 2,684,855 to 2,685,664 _02570 OHPLBJKB_02571: OHPLBJKB_02571 - 3-oxoacyl-[acyl-carrier-protein] synthase 2, at 2,685,784 to 2,687,025 _02571 OHPLBJKB_02572: OHPLBJKB_02572 - Acyl carrier protein, at 2,687,113 to 2,687,349 _02572 OHPLBJKB_02573: OHPLBJKB_02573 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 2,687,560 to 2,688,294 _02573 Position (kb) 2685 2686 2687 2688Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2684.833 kb on - strandat 2684.886 kb on + strandat 2684.886 kb on + strandat 2684.887 kb on - strandat 2684.887 kb on - strandat 2684.892 kb on + strandat 2684.892 kb on + strandat 2684.893 kb on - strandat 2684.894 kb on + strandat 2684.894 kb on + strandat 2684.894 kb on + strandat 2684.894 kb on + strandat 2684.894 kb on + strandat 2684.894 kb on + strandat 2684.895 kb on - strandat 2684.895 kb on - strandat 2684.895 kb on - strandat 2684.965 kb on + strand, within OHPLBJKB_02570at 2684.966 kb on - strand, within OHPLBJKB_02570at 2684.966 kb on - strand, within OHPLBJKB_02570at 2684.966 kb on - strand, within OHPLBJKB_02570at 2684.966 kb on - strand, within OHPLBJKB_02570at 2685.064 kb on + strand, within OHPLBJKB_02570at 2685.101 kb on - strand, within OHPLBJKB_02570at 2685.107 kb on + strand, within OHPLBJKB_02570at 2685.107 kb on + strand, within OHPLBJKB_02570at 2685.107 kb on + strand, within OHPLBJKB_02570at 2685.107 kb on + strand, within OHPLBJKB_02570at 2685.108 kb on - strand, within OHPLBJKB_02570at 2685.108 kb on - strand, within OHPLBJKB_02570at 2685.108 kb on - strand, within OHPLBJKB_02570at 2685.108 kb on - strand, within OHPLBJKB_02570at 2685.247 kb on + strand, within OHPLBJKB_02570at 2685.247 kb on + strand, within OHPLBJKB_02570at 2685.291 kb on - strand, within OHPLBJKB_02570at 2685.328 kb on - strand, within OHPLBJKB_02570at 2685.432 kb on - strand, within OHPLBJKB_02570at 2685.587 kb on - strandat 2685.645 kb on + strandat 2685.645 kb on + strandat 2685.726 kb on + strandat 2685.762 kb on + strandat 2685.762 kb on + strandat 2685.762 kb on + strandat 2685.763 kb on - strandat 2685.763 kb on - strandat 2685.763 kb on - strandat 2685.763 kb on - strandat 2685.786 kb on - strandat 2685.786 kb on - strandat 2685.837 kb on + strandat 2685.848 kb on + strandat 2685.968 kb on + strand, within OHPLBJKB_02571at 2685.969 kb on - strand, within OHPLBJKB_02571at 2685.973 kb on - strand, within OHPLBJKB_02571at 2685.973 kb on - strand, within OHPLBJKB_02571at 2685.998 kb on - strand, within OHPLBJKB_02571at 2686.105 kb on - strand, within OHPLBJKB_02571at 2686.111 kb on - strand, within OHPLBJKB_02571at 2686.218 kb on + strand, within OHPLBJKB_02571at 2686.223 kb on + strand, within OHPLBJKB_02571at 2686.224 kb on - strand, within OHPLBJKB_02571at 2686.224 kb on - strand, within OHPLBJKB_02571at 2686.224 kb on - strand, within OHPLBJKB_02571at 2686.263 kb on - strand, within OHPLBJKB_02571at 2686.263 kb on - strand, within OHPLBJKB_02571at 2686.296 kb on - strand, within OHPLBJKB_02571at 2686.334 kb on - strand, within OHPLBJKB_02571at 2686.488 kb on - strand, within OHPLBJKB_02571at 2686.534 kb on - strand, within OHPLBJKB_02571at 2686.574 kb on + strand, within OHPLBJKB_02571at 2686.574 kb on + strand, within OHPLBJKB_02571at 2686.574 kb on + strand, within OHPLBJKB_02571at 2686.581 kb on + strand, within OHPLBJKB_02571at 2686.582 kb on - strand, within OHPLBJKB_02571at 2686.641 kb on + strand, within OHPLBJKB_02571at 2686.641 kb on + strand, within OHPLBJKB_02571at 2686.642 kb on - strand, within OHPLBJKB_02571at 2686.839 kb on + strand, within OHPLBJKB_02571at 2686.868 kb on - strand, within OHPLBJKB_02571at 2686.963 kb on + strandat 2686.964 kb on - strandat 2686.964 kb on - strandat 2687.057 kb on + strandat 2687.058 kb on - strandat 2687.453 kb on - strandat 2687.453 kb on - strandat 2687.505 kb on - strandat 2687.505 kb on - strandat 2687.505 kb on - strandat 2687.514 kb on - strandat 2687.571 kb on - strandat 2687.571 kb on - strandat 2687.571 kb on - strandat 2687.571 kb on - strandat 2687.571 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phage Lil 3
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2,684,833 - +2.4
2,684,886 + +2.4
2,684,886 + +0.9
2,684,887 - +0.9
2,684,887 - +1.2
2,684,892 + -1.8
2,684,892 + -1.1
2,684,893 - +0.2
2,684,894 + -0.6
2,684,894 + -0.7
2,684,894 + -0.5
2,684,894 + +1.1
2,684,894 + -0.4
2,684,894 + -0.6
2,684,895 - -0.1
2,684,895 - +1.3
2,684,895 - +0.3
2,684,965 + OHPLBJKB_02570 0.14 +1.1
2,684,966 - OHPLBJKB_02570 0.14 -1.5
2,684,966 - OHPLBJKB_02570 0.14 +0.9
2,684,966 - OHPLBJKB_02570 0.14 +0.3
2,684,966 - OHPLBJKB_02570 0.14 +0.0
2,685,064 + OHPLBJKB_02570 0.26 +3.2
2,685,101 - OHPLBJKB_02570 0.30 +0.9
2,685,107 + OHPLBJKB_02570 0.31 -0.4
2,685,107 + OHPLBJKB_02570 0.31 +1.9
2,685,107 + OHPLBJKB_02570 0.31 -1.3
2,685,107 + OHPLBJKB_02570 0.31 -0.3
2,685,108 - OHPLBJKB_02570 0.31 +0.3
2,685,108 - OHPLBJKB_02570 0.31 +1.2
2,685,108 - OHPLBJKB_02570 0.31 -1.6
2,685,108 - OHPLBJKB_02570 0.31 -0.6
2,685,247 + OHPLBJKB_02570 0.48 +0.0
2,685,247 + OHPLBJKB_02570 0.48 -0.9
2,685,291 - OHPLBJKB_02570 0.54 -2.3
2,685,328 - OHPLBJKB_02570 0.58 -1.9
2,685,432 - OHPLBJKB_02570 0.71 +0.0
2,685,587 - -1.6
2,685,645 + +1.2
2,685,645 + +1.4
2,685,726 + +0.5
2,685,762 + -1.3
2,685,762 + -2.1
2,685,762 + -0.7
2,685,763 - +0.2
2,685,763 - -2.1
2,685,763 - -1.1
2,685,763 - +0.1
2,685,786 - -1.0
2,685,786 - +0.6
2,685,837 + +0.2
2,685,848 + +1.4
2,685,968 + OHPLBJKB_02571 0.15 +0.1
2,685,969 - OHPLBJKB_02571 0.15 +1.6
2,685,973 - OHPLBJKB_02571 0.15 +0.6
2,685,973 - OHPLBJKB_02571 0.15 -0.2
2,685,998 - OHPLBJKB_02571 0.17 -1.6
2,686,105 - OHPLBJKB_02571 0.26 -0.7
2,686,111 - OHPLBJKB_02571 0.26 +1.0
2,686,218 + OHPLBJKB_02571 0.35 -0.9
2,686,223 + OHPLBJKB_02571 0.35 +1.0
2,686,224 - OHPLBJKB_02571 0.35 -1.9
2,686,224 - OHPLBJKB_02571 0.35 -1.4
2,686,224 - OHPLBJKB_02571 0.35 -0.5
2,686,263 - OHPLBJKB_02571 0.39 -0.4
2,686,263 - OHPLBJKB_02571 0.39 +0.6
2,686,296 - OHPLBJKB_02571 0.41 -0.4
2,686,334 - OHPLBJKB_02571 0.44 -1.0
2,686,488 - OHPLBJKB_02571 0.57 +0.9
2,686,534 - OHPLBJKB_02571 0.60 +1.0
2,686,574 + OHPLBJKB_02571 0.64 -0.1
2,686,574 + OHPLBJKB_02571 0.64 +2.1
2,686,574 + OHPLBJKB_02571 0.64 -1.4
2,686,581 + OHPLBJKB_02571 0.64 +0.6
2,686,582 - OHPLBJKB_02571 0.64 -0.1
2,686,641 + OHPLBJKB_02571 0.69 +1.1
2,686,641 + OHPLBJKB_02571 0.69 +0.4
2,686,642 - OHPLBJKB_02571 0.69 -0.9
2,686,839 + OHPLBJKB_02571 0.85 -0.6
2,686,868 - OHPLBJKB_02571 0.87 -1.9
2,686,963 + -0.6
2,686,964 - -2.1
2,686,964 - -0.1
2,687,057 + +0.9
2,687,058 - -2.0
2,687,453 - -0.1
2,687,453 - -0.7
2,687,505 - -0.1
2,687,505 - -2.1
2,687,505 - -1.7
2,687,514 - +0.4
2,687,571 - +0.6
2,687,571 - +0.4
2,687,571 - +1.3
2,687,571 - -0.1
2,687,571 - +1.1

Or see this region's nucleotide sequence