Experiment: Phage Lil 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00762 and OHPLBJKB_00763 are separated by 7 nucleotides OHPLBJKB_00763 and OHPLBJKB_00764 overlap by 4 nucleotides OHPLBJKB_00764 and OHPLBJKB_00765 are separated by 17 nucleotides OHPLBJKB_00765 and OHPLBJKB_00766 are separated by 17 nucleotides
OHPLBJKB_00762: OHPLBJKB_00762 - dITP/XTP pyrophosphatase, at 784,709 to 785,302
_00762
OHPLBJKB_00763: OHPLBJKB_00763 - hypothetical protein, at 785,310 to 785,600
_00763
OHPLBJKB_00764: OHPLBJKB_00764 - hypothetical protein, at 785,597 to 786,163
_00764
OHPLBJKB_00765: OHPLBJKB_00765 - Pyridoxal phosphate homeostasis protein, at 786,181 to 786,885
_00765
OHPLBJKB_00766: OHPLBJKB_00766 - putative protein YggR, at 786,903 to 787,883
_00766
Position (kb) 786
787 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 785.302 kb on + strand at 785.303 kb on - strand at 785.303 kb on - strand at 785.307 kb on + strand at 785.308 kb on - strand at 785.311 kb on + strand at 785.311 kb on + strand at 785.311 kb on + strand at 785.312 kb on - strand at 785.312 kb on - strand at 785.312 kb on - strand at 785.312 kb on - strand at 785.312 kb on - strand at 785.312 kb on - strand at 785.315 kb on + strand at 785.315 kb on + strand at 785.316 kb on - strand at 785.319 kb on + strand at 785.320 kb on - strand at 785.400 kb on + strand, within OHPLBJKB_00763 at 785.400 kb on + strand, within OHPLBJKB_00763 at 785.401 kb on - strand, within OHPLBJKB_00763 at 785.401 kb on - strand, within OHPLBJKB_00763 at 785.401 kb on - strand, within OHPLBJKB_00763 at 785.499 kb on - strand, within OHPLBJKB_00763 at 785.515 kb on - strand, within OHPLBJKB_00763 at 785.525 kb on + strand, within OHPLBJKB_00763 at 785.525 kb on + strand, within OHPLBJKB_00763 at 785.525 kb on + strand, within OHPLBJKB_00763 at 785.526 kb on - strand, within OHPLBJKB_00763 at 785.552 kb on + strand, within OHPLBJKB_00763 at 785.552 kb on + strand, within OHPLBJKB_00763 at 785.552 kb on + strand, within OHPLBJKB_00763 at 785.553 kb on - strand, within OHPLBJKB_00763 at 785.554 kb on + strand, within OHPLBJKB_00763 at 785.554 kb on + strand, within OHPLBJKB_00763 at 785.554 kb on + strand, within OHPLBJKB_00763 at 785.554 kb on + strand, within OHPLBJKB_00763 at 785.554 kb on + strand, within OHPLBJKB_00763 at 785.554 kb on + strand, within OHPLBJKB_00763 at 785.555 kb on - strand, within OHPLBJKB_00763 at 785.555 kb on - strand, within OHPLBJKB_00763 at 785.555 kb on - strand, within OHPLBJKB_00763 at 785.555 kb on - strand, within OHPLBJKB_00763 at 785.562 kb on + strand, within OHPLBJKB_00763 at 785.583 kb on - strand at 785.583 kb on - strand at 785.590 kb on - strand at 785.601 kb on - strand at 785.601 kb on - strand at 785.629 kb on + strand at 785.649 kb on - strand at 785.676 kb on + strand, within OHPLBJKB_00764 at 785.676 kb on + strand, within OHPLBJKB_00764 at 785.676 kb on + strand, within OHPLBJKB_00764 at 785.676 kb on + strand, within OHPLBJKB_00764 at 785.676 kb on + strand, within OHPLBJKB_00764 at 785.677 kb on - strand, within OHPLBJKB_00764 at 785.677 kb on - strand, within OHPLBJKB_00764 at 785.677 kb on - strand, within OHPLBJKB_00764 at 785.677 kb on - strand, within OHPLBJKB_00764 at 785.677 kb on - strand, within OHPLBJKB_00764 at 785.677 kb on - strand, within OHPLBJKB_00764 at 785.677 kb on - strand, within OHPLBJKB_00764 at 785.781 kb on + strand, within OHPLBJKB_00764 at 785.781 kb on + strand, within OHPLBJKB_00764 at 785.782 kb on - strand, within OHPLBJKB_00764 at 785.795 kb on - strand, within OHPLBJKB_00764 at 785.953 kb on + strand, within OHPLBJKB_00764 at 785.954 kb on - strand, within OHPLBJKB_00764 at 785.955 kb on + strand, within OHPLBJKB_00764 at 785.955 kb on + strand, within OHPLBJKB_00764 at 785.955 kb on + strand, within OHPLBJKB_00764 at 785.956 kb on - strand, within OHPLBJKB_00764 at 785.956 kb on - strand, within OHPLBJKB_00764 at 786.036 kb on - strand, within OHPLBJKB_00764 at 786.045 kb on - strand, within OHPLBJKB_00764 at 786.045 kb on - strand, within OHPLBJKB_00764 at 786.101 kb on + strand, within OHPLBJKB_00764 at 786.101 kb on + strand, within OHPLBJKB_00764 at 786.104 kb on + strand, within OHPLBJKB_00764 at 786.119 kb on - strand at 786.120 kb on + strand at 786.120 kb on + strand at 786.120 kb on + strand at 786.120 kb on + strand at 786.120 kb on + strand at 786.121 kb on - strand at 786.121 kb on - strand at 786.121 kb on - strand at 786.157 kb on + strand at 786.158 kb on - strand at 786.189 kb on + strand at 786.240 kb on + strand at 786.241 kb on - strand at 786.241 kb on - strand at 786.241 kb on - strand at 786.331 kb on + strand, within OHPLBJKB_00765 at 786.364 kb on + strand, within OHPLBJKB_00765 at 786.364 kb on + strand, within OHPLBJKB_00765 at 786.364 kb on + strand, within OHPLBJKB_00765 at 786.364 kb on + strand, within OHPLBJKB_00765 at 786.364 kb on + strand, within OHPLBJKB_00765 at 786.365 kb on - strand, within OHPLBJKB_00765 at 786.365 kb on - strand, within OHPLBJKB_00765 at 786.369 kb on - strand, within OHPLBJKB_00765 at 786.369 kb on - strand, within OHPLBJKB_00765 at 786.369 kb on - strand, within OHPLBJKB_00765 at 786.369 kb on - strand, within OHPLBJKB_00765 at 786.369 kb on - strand, within OHPLBJKB_00765 at 786.413 kb on - strand, within OHPLBJKB_00765 at 786.422 kb on - strand, within OHPLBJKB_00765 at 786.478 kb on - strand, within OHPLBJKB_00765 at 786.582 kb on + strand, within OHPLBJKB_00765 at 786.582 kb on + strand, within OHPLBJKB_00765 at 786.582 kb on + strand, within OHPLBJKB_00765 at 786.583 kb on - strand, within OHPLBJKB_00765 at 786.621 kb on + strand, within OHPLBJKB_00765 at 786.622 kb on - strand, within OHPLBJKB_00765 at 786.624 kb on + strand, within OHPLBJKB_00765 at 786.655 kb on + strand, within OHPLBJKB_00765 at 786.655 kb on + strand, within OHPLBJKB_00765 at 786.656 kb on - strand, within OHPLBJKB_00765 at 786.656 kb on - strand, within OHPLBJKB_00765 at 786.693 kb on + strand, within OHPLBJKB_00765 at 786.693 kb on + strand, within OHPLBJKB_00765 at 786.693 kb on + strand, within OHPLBJKB_00765 at 786.693 kb on + strand, within OHPLBJKB_00765 at 786.697 kb on + strand, within OHPLBJKB_00765 at 786.697 kb on + strand, within OHPLBJKB_00765 at 786.698 kb on - strand, within OHPLBJKB_00765 at 786.713 kb on + strand, within OHPLBJKB_00765 at 786.714 kb on - strand, within OHPLBJKB_00765 at 786.714 kb on - strand, within OHPLBJKB_00765 at 786.714 kb on - strand, within OHPLBJKB_00765 at 786.799 kb on - strand, within OHPLBJKB_00765 at 786.876 kb on + strand at 786.899 kb on + strand at 786.899 kb on + strand at 786.900 kb on - strand at 786.900 kb on - strand at 786.900 kb on - strand at 786.900 kb on - strand at 786.900 kb on - strand at 786.900 kb on - strand at 786.900 kb on - strand at 786.902 kb on + strand at 786.929 kb on + strand at 786.929 kb on + strand at 786.935 kb on - strand at 786.935 kb on - strand at 786.955 kb on + strand at 786.955 kb on + strand at 786.955 kb on + strand at 786.955 kb on + strand at 786.956 kb on - strand at 786.956 kb on - strand at 786.956 kb on - strand at 786.956 kb on - strand at 787.043 kb on - strand, within OHPLBJKB_00766 at 787.189 kb on + strand, within OHPLBJKB_00766 at 787.246 kb on + strand, within OHPLBJKB_00766 at 787.246 kb on + strand, within OHPLBJKB_00766 at 787.247 kb on - strand, within OHPLBJKB_00766 at 787.305 kb on - strand, within OHPLBJKB_00766 at 787.330 kb on - strand, within OHPLBJKB_00766 at 787.334 kb on + strand, within OHPLBJKB_00766 at 787.335 kb on - strand, within OHPLBJKB_00766 at 787.383 kb on + strand, within OHPLBJKB_00766 at 787.383 kb on + strand, within OHPLBJKB_00766 at 787.383 kb on + strand, within OHPLBJKB_00766 at 787.383 kb on + strand, within OHPLBJKB_00766 at 787.389 kb on + strand, within OHPLBJKB_00766 at 787.389 kb on + strand, within OHPLBJKB_00766 at 787.389 kb on + strand, within OHPLBJKB_00766 at 787.390 kb on - strand, within OHPLBJKB_00766 at 787.439 kb on + strand, within OHPLBJKB_00766 at 787.439 kb on + strand, within OHPLBJKB_00766 at 787.440 kb on - strand, within OHPLBJKB_00766 at 787.507 kb on + strand, within OHPLBJKB_00766 at 787.507 kb on + strand, within OHPLBJKB_00766 at 787.508 kb on - strand, within OHPLBJKB_00766 at 787.508 kb on - strand, within OHPLBJKB_00766 at 787.576 kb on + strand, within OHPLBJKB_00766 at 787.576 kb on + strand, within OHPLBJKB_00766 at 787.577 kb on - strand, within OHPLBJKB_00766 at 787.577 kb on - strand, within OHPLBJKB_00766 at 787.577 kb on - strand, within OHPLBJKB_00766 at 787.577 kb on - strand, within OHPLBJKB_00766 at 787.577 kb on - strand, within OHPLBJKB_00766 at 787.577 kb on - strand, within OHPLBJKB_00766 at 787.577 kb on - strand, within OHPLBJKB_00766 at 787.577 kb on - strand, within OHPLBJKB_00766 at 787.580 kb on + strand, within OHPLBJKB_00766 at 787.580 kb on + strand, within OHPLBJKB_00766 at 787.580 kb on + strand, within OHPLBJKB_00766 at 787.580 kb on + strand, within OHPLBJKB_00766 at 787.580 kb on + strand, within OHPLBJKB_00766 at 787.580 kb on + strand, within OHPLBJKB_00766 at 787.580 kb on + strand, within OHPLBJKB_00766 at 787.580 kb on + strand, within OHPLBJKB_00766 at 787.580 kb on + strand, within OHPLBJKB_00766 at 787.580 kb on + strand, within OHPLBJKB_00766 at 787.580 kb on + strand, within OHPLBJKB_00766 at 787.580 kb on + strand, within OHPLBJKB_00766 at 787.581 kb on - strand, within OHPLBJKB_00766 at 787.581 kb on - strand, within OHPLBJKB_00766 at 787.581 kb on - strand, within OHPLBJKB_00766 at 787.581 kb on - strand, within OHPLBJKB_00766 at 787.581 kb on - strand, within OHPLBJKB_00766 at 787.652 kb on + strand, within OHPLBJKB_00766 at 787.667 kb on + strand, within OHPLBJKB_00766 at 787.668 kb on - strand, within OHPLBJKB_00766 at 787.668 kb on - strand, within OHPLBJKB_00766 at 787.834 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phage Lil 3 remove 785,302 + +0.7 785,303 - +0.2 785,303 - -0.9 785,307 + -2.1 785,308 - +0.3 785,311 + -1.7 785,311 + -1.1 785,311 + +0.8 785,312 - +0.5 785,312 - -1.2 785,312 - -0.6 785,312 - +0.1 785,312 - -0.4 785,312 - -0.2 785,315 + +0.2 785,315 + +1.5 785,316 - +0.7 785,319 + -1.5 785,320 - +0.3 785,400 + OHPLBJKB_00763 0.31 -2.5 785,400 + OHPLBJKB_00763 0.31 -0.5 785,401 - OHPLBJKB_00763 0.31 +0.7 785,401 - OHPLBJKB_00763 0.31 -1.4 785,401 - OHPLBJKB_00763 0.31 +0.2 785,499 - OHPLBJKB_00763 0.65 -1.0 785,515 - OHPLBJKB_00763 0.70 -0.6 785,525 + OHPLBJKB_00763 0.74 -0.4 785,525 + OHPLBJKB_00763 0.74 -1.6 785,525 + OHPLBJKB_00763 0.74 -0.3 785,526 - OHPLBJKB_00763 0.74 +0.3 785,552 + OHPLBJKB_00763 0.83 -0.3 785,552 + OHPLBJKB_00763 0.83 +0.9 785,552 + OHPLBJKB_00763 0.83 +1.8 785,553 - OHPLBJKB_00763 0.84 -0.0 785,554 + OHPLBJKB_00763 0.84 +2.6 785,554 + OHPLBJKB_00763 0.84 -0.0 785,554 + OHPLBJKB_00763 0.84 +0.1 785,554 + OHPLBJKB_00763 0.84 +0.6 785,554 + OHPLBJKB_00763 0.84 +0.4 785,554 + OHPLBJKB_00763 0.84 +0.8 785,555 - OHPLBJKB_00763 0.84 -0.6 785,555 - OHPLBJKB_00763 0.84 +1.3 785,555 - OHPLBJKB_00763 0.84 -0.7 785,555 - OHPLBJKB_00763 0.84 +0.6 785,562 + OHPLBJKB_00763 0.87 +0.5 785,583 - -0.2 785,583 - +0.3 785,590 - +1.0 785,601 - +1.2 785,601 - +2.0 785,629 + -0.8 785,649 - -0.3 785,676 + OHPLBJKB_00764 0.14 +0.2 785,676 + OHPLBJKB_00764 0.14 +0.9 785,676 + OHPLBJKB_00764 0.14 +0.8 785,676 + OHPLBJKB_00764 0.14 +0.2 785,676 + OHPLBJKB_00764 0.14 +1.4 785,677 - OHPLBJKB_00764 0.14 -0.8 785,677 - OHPLBJKB_00764 0.14 -0.6 785,677 - OHPLBJKB_00764 0.14 +0.4 785,677 - OHPLBJKB_00764 0.14 +0.7 785,677 - OHPLBJKB_00764 0.14 +0.5 785,677 - OHPLBJKB_00764 0.14 -2.2 785,677 - OHPLBJKB_00764 0.14 +0.4 785,781 + OHPLBJKB_00764 0.32 +0.7 785,781 + OHPLBJKB_00764 0.32 +0.5 785,782 - OHPLBJKB_00764 0.33 +0.1 785,795 - OHPLBJKB_00764 0.35 -0.6 785,953 + OHPLBJKB_00764 0.63 -0.7 785,954 - OHPLBJKB_00764 0.63 -0.2 785,955 + OHPLBJKB_00764 0.63 -1.7 785,955 + OHPLBJKB_00764 0.63 -0.1 785,955 + OHPLBJKB_00764 0.63 +1.0 785,956 - OHPLBJKB_00764 0.63 +0.5 785,956 - OHPLBJKB_00764 0.63 +0.5 786,036 - OHPLBJKB_00764 0.77 +1.5 786,045 - OHPLBJKB_00764 0.79 -0.8 786,045 - OHPLBJKB_00764 0.79 -0.8 786,101 + OHPLBJKB_00764 0.89 +1.2 786,101 + OHPLBJKB_00764 0.89 +0.5 786,104 + OHPLBJKB_00764 0.89 +1.0 786,119 - -0.0 786,120 + +0.2 786,120 + +1.4 786,120 + +2.0 786,120 + -0.3 786,120 + -0.7 786,121 - +0.5 786,121 - -0.6 786,121 - -0.3 786,157 + +1.8 786,158 - -0.9 786,189 + -0.5 786,240 + +1.1 786,241 - -2.1 786,241 - -0.0 786,241 - -2.7 786,331 + OHPLBJKB_00765 0.21 +0.5 786,364 + OHPLBJKB_00765 0.26 -2.7 786,364 + OHPLBJKB_00765 0.26 -0.7 786,364 + OHPLBJKB_00765 0.26 -0.7 786,364 + OHPLBJKB_00765 0.26 +2.5 786,364 + OHPLBJKB_00765 0.26 -0.9 786,365 - OHPLBJKB_00765 0.26 -1.2 786,365 - OHPLBJKB_00765 0.26 -1.4 786,369 - OHPLBJKB_00765 0.27 -0.8 786,369 - OHPLBJKB_00765 0.27 +0.1 786,369 - OHPLBJKB_00765 0.27 -0.5 786,369 - OHPLBJKB_00765 0.27 -0.5 786,369 - OHPLBJKB_00765 0.27 +0.5 786,413 - OHPLBJKB_00765 0.33 -0.5 786,422 - OHPLBJKB_00765 0.34 -0.6 786,478 - OHPLBJKB_00765 0.42 -0.9 786,582 + OHPLBJKB_00765 0.57 -2.0 786,582 + OHPLBJKB_00765 0.57 +0.8 786,582 + OHPLBJKB_00765 0.57 +1.0 786,583 - OHPLBJKB_00765 0.57 -1.4 786,621 + OHPLBJKB_00765 0.62 +0.5 786,622 - OHPLBJKB_00765 0.63 -0.5 786,624 + OHPLBJKB_00765 0.63 +1.2 786,655 + OHPLBJKB_00765 0.67 -0.0 786,655 + OHPLBJKB_00765 0.67 -0.3 786,656 - OHPLBJKB_00765 0.67 +1.0 786,656 - OHPLBJKB_00765 0.67 -0.0 786,693 + OHPLBJKB_00765 0.73 -1.9 786,693 + OHPLBJKB_00765 0.73 -0.6 786,693 + OHPLBJKB_00765 0.73 +1.0 786,693 + OHPLBJKB_00765 0.73 -0.3 786,697 + OHPLBJKB_00765 0.73 +1.0 786,697 + OHPLBJKB_00765 0.73 -0.0 786,698 - OHPLBJKB_00765 0.73 -0.6 786,713 + OHPLBJKB_00765 0.75 -0.8 786,714 - OHPLBJKB_00765 0.76 +0.4 786,714 - OHPLBJKB_00765 0.76 -0.6 786,714 - OHPLBJKB_00765 0.76 -0.5 786,799 - OHPLBJKB_00765 0.88 -0.2 786,876 + -0.5 786,899 + -0.9 786,899 + +1.8 786,900 - -0.4 786,900 - +0.7 786,900 - -0.2 786,900 - -1.5 786,900 - +0.7 786,900 - -0.4 786,900 - +0.5 786,902 + +1.5 786,929 + +0.0 786,929 + -0.0 786,935 - -0.3 786,935 - -0.2 786,955 + +1.0 786,955 + -2.6 786,955 + -0.1 786,955 + +0.3 786,956 - -1.0 786,956 - -0.9 786,956 - -0.6 786,956 - +1.0 787,043 - OHPLBJKB_00766 0.14 +1.5 787,189 + OHPLBJKB_00766 0.29 -1.0 787,246 + OHPLBJKB_00766 0.35 -1.1 787,246 + OHPLBJKB_00766 0.35 +0.4 787,247 - OHPLBJKB_00766 0.35 +1.1 787,305 - OHPLBJKB_00766 0.41 +0.4 787,330 - OHPLBJKB_00766 0.44 -0.5 787,334 + OHPLBJKB_00766 0.44 -1.3 787,335 - OHPLBJKB_00766 0.44 -0.9 787,383 + OHPLBJKB_00766 0.49 -0.1 787,383 + OHPLBJKB_00766 0.49 +0.2 787,383 + OHPLBJKB_00766 0.49 +0.3 787,383 + OHPLBJKB_00766 0.49 +1.0 787,389 + OHPLBJKB_00766 0.50 -0.8 787,389 + OHPLBJKB_00766 0.50 -0.2 787,389 + OHPLBJKB_00766 0.50 -0.7 787,390 - OHPLBJKB_00766 0.50 -0.6 787,439 + OHPLBJKB_00766 0.55 -1.7 787,439 + OHPLBJKB_00766 0.55 -0.7 787,440 - OHPLBJKB_00766 0.55 -0.5 787,507 + OHPLBJKB_00766 0.62 +0.8 787,507 + OHPLBJKB_00766 0.62 -0.8 787,508 - OHPLBJKB_00766 0.62 -2.0 787,508 - OHPLBJKB_00766 0.62 -0.8 787,576 + OHPLBJKB_00766 0.69 +0.5 787,576 + OHPLBJKB_00766 0.69 -0.0 787,577 - OHPLBJKB_00766 0.69 +0.0 787,577 - OHPLBJKB_00766 0.69 -1.1 787,577 - OHPLBJKB_00766 0.69 +1.1 787,577 - OHPLBJKB_00766 0.69 -1.6 787,577 - OHPLBJKB_00766 0.69 -0.6 787,577 - OHPLBJKB_00766 0.69 -2.4 787,577 - OHPLBJKB_00766 0.69 +1.3 787,577 - OHPLBJKB_00766 0.69 -0.5 787,580 + OHPLBJKB_00766 0.69 -1.3 787,580 + OHPLBJKB_00766 0.69 -0.5 787,580 + OHPLBJKB_00766 0.69 +0.4 787,580 + OHPLBJKB_00766 0.69 +0.3 787,580 + OHPLBJKB_00766 0.69 +0.4 787,580 + OHPLBJKB_00766 0.69 -2.2 787,580 + OHPLBJKB_00766 0.69 -0.3 787,580 + OHPLBJKB_00766 0.69 -1.2 787,580 + OHPLBJKB_00766 0.69 +0.8 787,580 + OHPLBJKB_00766 0.69 +0.2 787,580 + OHPLBJKB_00766 0.69 +0.2 787,580 + OHPLBJKB_00766 0.69 -0.2 787,581 - OHPLBJKB_00766 0.69 +0.6 787,581 - OHPLBJKB_00766 0.69 +0.3 787,581 - OHPLBJKB_00766 0.69 +3.5 787,581 - OHPLBJKB_00766 0.69 -1.1 787,581 - OHPLBJKB_00766 0.69 -1.3 787,652 + OHPLBJKB_00766 0.76 -1.2 787,667 + OHPLBJKB_00766 0.78 -0.3 787,668 - OHPLBJKB_00766 0.78 -1.5 787,668 - OHPLBJKB_00766 0.78 +0.5 787,834 + -1.0
Or see this region's nucleotide sequence