Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00632

Experiment: Phage Iri 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00631 and OHPLBJKB_00632 are separated by 287 nucleotidesOHPLBJKB_00632 and OHPLBJKB_00633 are separated by 52 nucleotidesOHPLBJKB_00633 and OHPLBJKB_00634 are separated by 124 nucleotidesOHPLBJKB_00634 and OHPLBJKB_00635 are separated by 78 nucleotides OHPLBJKB_00631: OHPLBJKB_00631 - Transcriptional regulator YqjI, at 650,055 to 650,678 _00631 OHPLBJKB_00632: OHPLBJKB_00632 - NADPH-dependent ferric-chelate reductase, at 650,966 to 651,730 _00632 OHPLBJKB_00633: OHPLBJKB_00633 - tRNA-Met, at 651,783 to 651,858 _00633 OHPLBJKB_00634: OHPLBJKB_00634 - G/U mismatch-specific DNA glycosylase, at 651,983 to 652,489 _00634 OHPLBJKB_00635: OHPLBJKB_00635 - RNA polymerase sigma factor RpoD, at 652,568 to 654,409 _00635 Position (kb) 650 651 652Strain fitness (log2 ratio) -2 -1 0 1 2at 650.069 kb on + strandat 650.069 kb on + strandat 650.070 kb on - strandat 650.070 kb on - strandat 650.073 kb on - strandat 650.113 kb on - strandat 650.315 kb on + strand, within OHPLBJKB_00631at 650.315 kb on + strand, within OHPLBJKB_00631at 650.402 kb on - strand, within OHPLBJKB_00631at 650.402 kb on - strand, within OHPLBJKB_00631at 650.402 kb on - strand, within OHPLBJKB_00631at 650.402 kb on - strand, within OHPLBJKB_00631at 650.472 kb on - strand, within OHPLBJKB_00631at 650.651 kb on + strandat 650.651 kb on + strandat 650.652 kb on - strandat 650.652 kb on - strandat 650.731 kb on - strandat 650.863 kb on + strandat 650.863 kb on + strandat 650.863 kb on + strandat 650.865 kb on + strandat 650.866 kb on - strandat 650.937 kb on - strandat 650.937 kb on - strandat 650.971 kb on + strandat 651.034 kb on - strandat 651.100 kb on + strand, within OHPLBJKB_00632at 651.100 kb on + strand, within OHPLBJKB_00632at 651.227 kb on + strand, within OHPLBJKB_00632at 651.228 kb on - strand, within OHPLBJKB_00632at 651.228 kb on - strand, within OHPLBJKB_00632at 651.229 kb on + strand, within OHPLBJKB_00632at 651.230 kb on - strand, within OHPLBJKB_00632at 651.230 kb on - strand, within OHPLBJKB_00632at 651.240 kb on - strand, within OHPLBJKB_00632at 651.249 kb on + strand, within OHPLBJKB_00632at 651.278 kb on - strand, within OHPLBJKB_00632at 651.302 kb on - strand, within OHPLBJKB_00632at 651.395 kb on + strand, within OHPLBJKB_00632at 651.395 kb on + strand, within OHPLBJKB_00632at 651.396 kb on - strand, within OHPLBJKB_00632at 651.396 kb on - strand, within OHPLBJKB_00632at 651.396 kb on - strand, within OHPLBJKB_00632at 651.475 kb on + strand, within OHPLBJKB_00632at 651.475 kb on + strand, within OHPLBJKB_00632at 651.515 kb on + strand, within OHPLBJKB_00632at 651.573 kb on + strand, within OHPLBJKB_00632at 651.574 kb on - strand, within OHPLBJKB_00632at 651.614 kb on + strand, within OHPLBJKB_00632at 651.614 kb on + strand, within OHPLBJKB_00632at 651.614 kb on + strand, within OHPLBJKB_00632at 651.615 kb on - strand, within OHPLBJKB_00632at 651.615 kb on - strand, within OHPLBJKB_00632at 651.615 kb on - strand, within OHPLBJKB_00632at 651.736 kb on - strandat 651.739 kb on + strandat 651.777 kb on + strandat 651.777 kb on + strandat 651.778 kb on - strandat 651.778 kb on - strandat 651.780 kb on - strandat 651.950 kb on + strandat 651.978 kb on + strandat 651.978 kb on + strandat 651.982 kb on + strandat 651.982 kb on + strandat 651.983 kb on - strandat 651.983 kb on - strandat 651.983 kb on - strandat 652.104 kb on + strand, within OHPLBJKB_00634at 652.104 kb on + strand, within OHPLBJKB_00634at 652.104 kb on + strand, within OHPLBJKB_00634at 652.104 kb on + strand, within OHPLBJKB_00634at 652.104 kb on + strand, within OHPLBJKB_00634at 652.105 kb on - strand, within OHPLBJKB_00634at 652.105 kb on - strand, within OHPLBJKB_00634at 652.105 kb on - strand, within OHPLBJKB_00634at 652.105 kb on - strand, within OHPLBJKB_00634at 652.106 kb on + strand, within OHPLBJKB_00634at 652.107 kb on - strand, within OHPLBJKB_00634at 652.253 kb on - strand, within OHPLBJKB_00634at 652.316 kb on + strand, within OHPLBJKB_00634at 652.316 kb on + strand, within OHPLBJKB_00634at 652.316 kb on + strand, within OHPLBJKB_00634at 652.317 kb on - strand, within OHPLBJKB_00634at 652.317 kb on - strand, within OHPLBJKB_00634at 652.317 kb on - strand, within OHPLBJKB_00634at 652.570 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phage Iri 3
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650,069 + -0.4
650,069 + -2.0
650,070 - -0.3
650,070 - +1.9
650,073 - +0.3
650,113 - +1.2
650,315 + OHPLBJKB_00631 0.42 +0.6
650,315 + OHPLBJKB_00631 0.42 -0.4
650,402 - OHPLBJKB_00631 0.56 -1.1
650,402 - OHPLBJKB_00631 0.56 -0.6
650,402 - OHPLBJKB_00631 0.56 +0.4
650,402 - OHPLBJKB_00631 0.56 +0.1
650,472 - OHPLBJKB_00631 0.67 +1.0
650,651 + -0.4
650,651 + -0.1
650,652 - +0.4
650,652 - -1.0
650,731 - -0.4
650,863 + +0.7
650,863 + -1.0
650,863 + +0.4
650,865 + +1.4
650,866 - -0.6
650,937 - +0.8
650,937 - -0.5
650,971 + -0.4
651,034 - -1.6
651,100 + OHPLBJKB_00632 0.18 -1.2
651,100 + OHPLBJKB_00632 0.18 +0.8
651,227 + OHPLBJKB_00632 0.34 +0.1
651,228 - OHPLBJKB_00632 0.34 +2.5
651,228 - OHPLBJKB_00632 0.34 -0.3
651,229 + OHPLBJKB_00632 0.34 +2.1
651,230 - OHPLBJKB_00632 0.35 -1.4
651,230 - OHPLBJKB_00632 0.35 -1.1
651,240 - OHPLBJKB_00632 0.36 +1.6
651,249 + OHPLBJKB_00632 0.37 +0.1
651,278 - OHPLBJKB_00632 0.41 -0.7
651,302 - OHPLBJKB_00632 0.44 +0.6
651,395 + OHPLBJKB_00632 0.56 +0.1
651,395 + OHPLBJKB_00632 0.56 +0.2
651,396 - OHPLBJKB_00632 0.56 -1.0
651,396 - OHPLBJKB_00632 0.56 -0.2
651,396 - OHPLBJKB_00632 0.56 -1.7
651,475 + OHPLBJKB_00632 0.67 -2.3
651,475 + OHPLBJKB_00632 0.67 -0.8
651,515 + OHPLBJKB_00632 0.72 -0.1
651,573 + OHPLBJKB_00632 0.79 -1.5
651,574 - OHPLBJKB_00632 0.79 -2.1
651,614 + OHPLBJKB_00632 0.85 -0.2
651,614 + OHPLBJKB_00632 0.85 +0.2
651,614 + OHPLBJKB_00632 0.85 -1.0
651,615 - OHPLBJKB_00632 0.85 -0.6
651,615 - OHPLBJKB_00632 0.85 -2.3
651,615 - OHPLBJKB_00632 0.85 +0.7
651,736 - -0.7
651,739 + -0.6
651,777 + +0.1
651,777 + -1.6
651,778 - -0.3
651,778 - +0.3
651,780 - +0.4
651,950 + -0.6
651,978 + -0.2
651,978 + -1.9
651,982 + +0.5
651,982 + +0.3
651,983 - +0.7
651,983 - -1.1
651,983 - +0.4
652,104 + OHPLBJKB_00634 0.24 +0.1
652,104 + OHPLBJKB_00634 0.24 -1.3
652,104 + OHPLBJKB_00634 0.24 -1.1
652,104 + OHPLBJKB_00634 0.24 -0.7
652,104 + OHPLBJKB_00634 0.24 -0.1
652,105 - OHPLBJKB_00634 0.24 +1.5
652,105 - OHPLBJKB_00634 0.24 -1.1
652,105 - OHPLBJKB_00634 0.24 +0.5
652,105 - OHPLBJKB_00634 0.24 +2.2
652,106 + OHPLBJKB_00634 0.24 +0.5
652,107 - OHPLBJKB_00634 0.24 -1.0
652,253 - OHPLBJKB_00634 0.53 -0.6
652,316 + OHPLBJKB_00634 0.66 -0.4
652,316 + OHPLBJKB_00634 0.66 -0.5
652,316 + OHPLBJKB_00634 0.66 +0.1
652,317 - OHPLBJKB_00634 0.66 -1.9
652,317 - OHPLBJKB_00634 0.66 +0.8
652,317 - OHPLBJKB_00634 0.66 -0.8
652,570 - -0.1

Or see this region's nucleotide sequence