Experiment: No phage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02030 and OHPLBJKB_02031 are separated by 144 nucleotides OHPLBJKB_02031 and OHPLBJKB_02032 are separated by 30 nucleotides OHPLBJKB_02032 and OHPLBJKB_02033 are separated by 11 nucleotides
OHPLBJKB_02030: OHPLBJKB_02030 - Acetate CoA-transferase YdiF, at 2,103,712 to 2,105,031
_02030
OHPLBJKB_02031: OHPLBJKB_02031 - 3-dehydroquinate dehydratase, at 2,105,176 to 2,105,934
_02031
OHPLBJKB_02032: OHPLBJKB_02032 - Quinate/shikimate dehydrogenase, at 2,105,965 to 2,106,831
_02032
OHPLBJKB_02033: OHPLBJKB_02033 - Inner membrane transport protein YdiN, at 2,106,843 to 2,108,108
_02033
Position (kb)
2105
2106
2107 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2105.198 kb on - strand at 2105.282 kb on - strand, within OHPLBJKB_02031 at 2105.352 kb on - strand, within OHPLBJKB_02031 at 2105.428 kb on - strand, within OHPLBJKB_02031 at 2105.428 kb on - strand, within OHPLBJKB_02031 at 2105.601 kb on + strand, within OHPLBJKB_02031 at 2105.602 kb on - strand, within OHPLBJKB_02031 at 2105.644 kb on - strand, within OHPLBJKB_02031 at 2105.645 kb on + strand, within OHPLBJKB_02031 at 2105.646 kb on - strand, within OHPLBJKB_02031 at 2105.646 kb on - strand, within OHPLBJKB_02031 at 2105.996 kb on + strand at 2106.109 kb on + strand, within OHPLBJKB_02032 at 2106.129 kb on + strand, within OHPLBJKB_02032 at 2106.131 kb on + strand, within OHPLBJKB_02032 at 2106.131 kb on + strand, within OHPLBJKB_02032 at 2106.131 kb on + strand, within OHPLBJKB_02032 at 2106.132 kb on - strand, within OHPLBJKB_02032 at 2106.487 kb on - strand, within OHPLBJKB_02032 at 2106.602 kb on + strand, within OHPLBJKB_02032 at 2106.603 kb on - strand, within OHPLBJKB_02032 at 2106.603 kb on - strand, within OHPLBJKB_02032 at 2106.603 kb on - strand, within OHPLBJKB_02032 at 2106.717 kb on - strand, within OHPLBJKB_02032 at 2106.751 kb on - strand at 2106.858 kb on - strand at 2107.076 kb on + strand, within OHPLBJKB_02033 at 2107.340 kb on - strand, within OHPLBJKB_02033 at 2107.394 kb on - strand, within OHPLBJKB_02033 at 2107.421 kb on - strand, within OHPLBJKB_02033 at 2107.637 kb on - strand, within OHPLBJKB_02033 at 2107.692 kb on + strand, within OHPLBJKB_02033 at 2107.772 kb on + strand, within OHPLBJKB_02033
Per-strain Table
Position Strand Gene LocusTag Fraction No phage remove 2,105,198 - -1.7 2,105,282 - OHPLBJKB_02031 0.14 -1.3 2,105,352 - OHPLBJKB_02031 0.23 +0.5 2,105,428 - OHPLBJKB_02031 0.33 -0.1 2,105,428 - OHPLBJKB_02031 0.33 +0.9 2,105,601 + OHPLBJKB_02031 0.56 -0.5 2,105,602 - OHPLBJKB_02031 0.56 -2.7 2,105,644 - OHPLBJKB_02031 0.62 -2.8 2,105,645 + OHPLBJKB_02031 0.62 -1.1 2,105,646 - OHPLBJKB_02031 0.62 +1.5 2,105,646 - OHPLBJKB_02031 0.62 +0.9 2,105,996 + -1.1 2,106,109 + OHPLBJKB_02032 0.17 -1.0 2,106,129 + OHPLBJKB_02032 0.19 -1.3 2,106,131 + OHPLBJKB_02032 0.19 -1.5 2,106,131 + OHPLBJKB_02032 0.19 -0.8 2,106,131 + OHPLBJKB_02032 0.19 +0.6 2,106,132 - OHPLBJKB_02032 0.19 -2.2 2,106,487 - OHPLBJKB_02032 0.60 +0.1 2,106,602 + OHPLBJKB_02032 0.73 +1.1 2,106,603 - OHPLBJKB_02032 0.74 +1.0 2,106,603 - OHPLBJKB_02032 0.74 +0.8 2,106,603 - OHPLBJKB_02032 0.74 -0.0 2,106,717 - OHPLBJKB_02032 0.87 +0.9 2,106,751 - +0.1 2,106,858 - -0.9 2,107,076 + OHPLBJKB_02033 0.18 +0.6 2,107,340 - OHPLBJKB_02033 0.39 -1.3 2,107,394 - OHPLBJKB_02033 0.44 -0.5 2,107,421 - OHPLBJKB_02033 0.46 -1.1 2,107,637 - OHPLBJKB_02033 0.63 -1.1 2,107,692 + OHPLBJKB_02033 0.67 -1.3 2,107,772 + OHPLBJKB_02033 0.73 -1.0
Or see this region's nucleotide sequence