Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02032

Experiment: No phage

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_02030 and OHPLBJKB_02031 are separated by 144 nucleotidesOHPLBJKB_02031 and OHPLBJKB_02032 are separated by 30 nucleotidesOHPLBJKB_02032 and OHPLBJKB_02033 are separated by 11 nucleotides OHPLBJKB_02030: OHPLBJKB_02030 - Acetate CoA-transferase YdiF, at 2,103,712 to 2,105,031 _02030 OHPLBJKB_02031: OHPLBJKB_02031 - 3-dehydroquinate dehydratase, at 2,105,176 to 2,105,934 _02031 OHPLBJKB_02032: OHPLBJKB_02032 - Quinate/shikimate dehydrogenase, at 2,105,965 to 2,106,831 _02032 OHPLBJKB_02033: OHPLBJKB_02033 - Inner membrane transport protein YdiN, at 2,106,843 to 2,108,108 _02033 Position (kb) 2105 2106 2107Strain fitness (log2 ratio) -3 -2 -1 0 1at 2105.198 kb on - strandat 2105.282 kb on - strand, within OHPLBJKB_02031at 2105.352 kb on - strand, within OHPLBJKB_02031at 2105.428 kb on - strand, within OHPLBJKB_02031at 2105.428 kb on - strand, within OHPLBJKB_02031at 2105.601 kb on + strand, within OHPLBJKB_02031at 2105.602 kb on - strand, within OHPLBJKB_02031at 2105.644 kb on - strand, within OHPLBJKB_02031at 2105.645 kb on + strand, within OHPLBJKB_02031at 2105.646 kb on - strand, within OHPLBJKB_02031at 2105.646 kb on - strand, within OHPLBJKB_02031at 2105.996 kb on + strandat 2106.109 kb on + strand, within OHPLBJKB_02032at 2106.129 kb on + strand, within OHPLBJKB_02032at 2106.131 kb on + strand, within OHPLBJKB_02032at 2106.131 kb on + strand, within OHPLBJKB_02032at 2106.131 kb on + strand, within OHPLBJKB_02032at 2106.132 kb on - strand, within OHPLBJKB_02032at 2106.487 kb on - strand, within OHPLBJKB_02032at 2106.602 kb on + strand, within OHPLBJKB_02032at 2106.603 kb on - strand, within OHPLBJKB_02032at 2106.603 kb on - strand, within OHPLBJKB_02032at 2106.603 kb on - strand, within OHPLBJKB_02032at 2106.717 kb on - strand, within OHPLBJKB_02032at 2106.751 kb on - strandat 2106.858 kb on - strandat 2107.076 kb on + strand, within OHPLBJKB_02033at 2107.340 kb on - strand, within OHPLBJKB_02033at 2107.394 kb on - strand, within OHPLBJKB_02033at 2107.421 kb on - strand, within OHPLBJKB_02033at 2107.637 kb on - strand, within OHPLBJKB_02033at 2107.692 kb on + strand, within OHPLBJKB_02033at 2107.772 kb on + strand, within OHPLBJKB_02033

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No phage
remove
2,105,198 - -1.7
2,105,282 - OHPLBJKB_02031 0.14 -1.3
2,105,352 - OHPLBJKB_02031 0.23 +0.5
2,105,428 - OHPLBJKB_02031 0.33 -0.1
2,105,428 - OHPLBJKB_02031 0.33 +0.9
2,105,601 + OHPLBJKB_02031 0.56 -0.5
2,105,602 - OHPLBJKB_02031 0.56 -2.7
2,105,644 - OHPLBJKB_02031 0.62 -2.8
2,105,645 + OHPLBJKB_02031 0.62 -1.1
2,105,646 - OHPLBJKB_02031 0.62 +1.5
2,105,646 - OHPLBJKB_02031 0.62 +0.9
2,105,996 + -1.1
2,106,109 + OHPLBJKB_02032 0.17 -1.0
2,106,129 + OHPLBJKB_02032 0.19 -1.3
2,106,131 + OHPLBJKB_02032 0.19 -1.5
2,106,131 + OHPLBJKB_02032 0.19 -0.8
2,106,131 + OHPLBJKB_02032 0.19 +0.6
2,106,132 - OHPLBJKB_02032 0.19 -2.2
2,106,487 - OHPLBJKB_02032 0.60 +0.1
2,106,602 + OHPLBJKB_02032 0.73 +1.1
2,106,603 - OHPLBJKB_02032 0.74 +1.0
2,106,603 - OHPLBJKB_02032 0.74 +0.8
2,106,603 - OHPLBJKB_02032 0.74 -0.0
2,106,717 - OHPLBJKB_02032 0.87 +0.9
2,106,751 - +0.1
2,106,858 - -0.9
2,107,076 + OHPLBJKB_02033 0.18 +0.6
2,107,340 - OHPLBJKB_02033 0.39 -1.3
2,107,394 - OHPLBJKB_02033 0.44 -0.5
2,107,421 - OHPLBJKB_02033 0.46 -1.1
2,107,637 - OHPLBJKB_02033 0.63 -1.1
2,107,692 + OHPLBJKB_02033 0.67 -1.3
2,107,772 + OHPLBJKB_02033 0.73 -1.0

Or see this region's nucleotide sequence