Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02030 and OHPLBJKB_02031 are separated by 144 nucleotidesOHPLBJKB_02031 and OHPLBJKB_02032 are separated by 30 nucleotidesOHPLBJKB_02032 and OHPLBJKB_02033 are separated by 11 nucleotides OHPLBJKB_02030: OHPLBJKB_02030 - Acetate CoA-transferase YdiF, at 2,103,712 to 2,105,031 _02030 OHPLBJKB_02031: OHPLBJKB_02031 - 3-dehydroquinate dehydratase, at 2,105,176 to 2,105,934 _02031 OHPLBJKB_02032: OHPLBJKB_02032 - Quinate/shikimate dehydrogenase, at 2,105,965 to 2,106,831 _02032 OHPLBJKB_02033: OHPLBJKB_02033 - Inner membrane transport protein YdiN, at 2,106,843 to 2,108,108 _02033 Position (kb) 2105 2106Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2104.188 kb on + strand, within OHPLBJKB_02030at 2104.189 kb on - strand, within OHPLBJKB_02030at 2104.254 kb on - strand, within OHPLBJKB_02030at 2104.321 kb on - strand, within OHPLBJKB_02030at 2104.381 kb on - strand, within OHPLBJKB_02030at 2104.385 kb on + strand, within OHPLBJKB_02030at 2104.418 kb on + strand, within OHPLBJKB_02030at 2104.418 kb on + strand, within OHPLBJKB_02030at 2104.418 kb on + strand, within OHPLBJKB_02030at 2104.508 kb on + strand, within OHPLBJKB_02030at 2104.514 kb on + strand, within OHPLBJKB_02030at 2104.515 kb on - strand, within OHPLBJKB_02030at 2104.542 kb on + strand, within OHPLBJKB_02030at 2104.626 kb on + strand, within OHPLBJKB_02030at 2104.668 kb on + strand, within OHPLBJKB_02030at 2104.668 kb on + strand, within OHPLBJKB_02030at 2104.672 kb on + strand, within OHPLBJKB_02030at 2105.198 kb on - strandat 2105.282 kb on - strand, within OHPLBJKB_02031at 2105.352 kb on - strand, within OHPLBJKB_02031at 2105.428 kb on - strand, within OHPLBJKB_02031at 2105.428 kb on - strand, within OHPLBJKB_02031at 2105.601 kb on + strand, within OHPLBJKB_02031at 2105.602 kb on - strand, within OHPLBJKB_02031at 2105.644 kb on - strand, within OHPLBJKB_02031at 2105.645 kb on + strand, within OHPLBJKB_02031at 2105.646 kb on - strand, within OHPLBJKB_02031at 2105.646 kb on - strand, within OHPLBJKB_02031at 2105.996 kb on + strandat 2106.109 kb on + strand, within OHPLBJKB_02032at 2106.129 kb on + strand, within OHPLBJKB_02032at 2106.131 kb on + strand, within OHPLBJKB_02032at 2106.131 kb on + strand, within OHPLBJKB_02032at 2106.131 kb on + strand, within OHPLBJKB_02032at 2106.132 kb on - strand, within OHPLBJKB_02032at 2106.487 kb on - strand, within OHPLBJKB_02032at 2106.602 kb on + strand, within OHPLBJKB_02032at 2106.603 kb on - strand, within OHPLBJKB_02032at 2106.603 kb on - strand, within OHPLBJKB_02032at 2106.603 kb on - strand, within OHPLBJKB_02032at 2106.717 kb on - strand, within OHPLBJKB_02032at 2106.751 kb on - strandat 2106.858 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage
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2,104,188 + OHPLBJKB_02030 0.36 +0.6
2,104,189 - OHPLBJKB_02030 0.36 +2.5
2,104,254 - OHPLBJKB_02030 0.41 -0.4
2,104,321 - OHPLBJKB_02030 0.46 -0.1
2,104,381 - OHPLBJKB_02030 0.51 +1.2
2,104,385 + OHPLBJKB_02030 0.51 +0.5
2,104,418 + OHPLBJKB_02030 0.53 -1.4
2,104,418 + OHPLBJKB_02030 0.53 -0.1
2,104,418 + OHPLBJKB_02030 0.53 +0.5
2,104,508 + OHPLBJKB_02030 0.60 -0.1
2,104,514 + OHPLBJKB_02030 0.61 -0.5
2,104,515 - OHPLBJKB_02030 0.61 +0.5
2,104,542 + OHPLBJKB_02030 0.63 -0.1
2,104,626 + OHPLBJKB_02030 0.69 +0.4
2,104,668 + OHPLBJKB_02030 0.72 +1.5
2,104,668 + OHPLBJKB_02030 0.72 -0.4
2,104,672 + OHPLBJKB_02030 0.73 +0.5
2,105,198 - -1.7
2,105,282 - OHPLBJKB_02031 0.14 -1.3
2,105,352 - OHPLBJKB_02031 0.23 +0.5
2,105,428 - OHPLBJKB_02031 0.33 -0.1
2,105,428 - OHPLBJKB_02031 0.33 +0.9
2,105,601 + OHPLBJKB_02031 0.56 -0.5
2,105,602 - OHPLBJKB_02031 0.56 -2.7
2,105,644 - OHPLBJKB_02031 0.62 -2.8
2,105,645 + OHPLBJKB_02031 0.62 -1.1
2,105,646 - OHPLBJKB_02031 0.62 +1.5
2,105,646 - OHPLBJKB_02031 0.62 +0.9
2,105,996 + -1.1
2,106,109 + OHPLBJKB_02032 0.17 -1.0
2,106,129 + OHPLBJKB_02032 0.19 -1.3
2,106,131 + OHPLBJKB_02032 0.19 -1.5
2,106,131 + OHPLBJKB_02032 0.19 -0.8
2,106,131 + OHPLBJKB_02032 0.19 +0.6
2,106,132 - OHPLBJKB_02032 0.19 -2.2
2,106,487 - OHPLBJKB_02032 0.60 +0.1
2,106,602 + OHPLBJKB_02032 0.73 +1.1
2,106,603 - OHPLBJKB_02032 0.74 +1.0
2,106,603 - OHPLBJKB_02032 0.74 +0.8
2,106,603 - OHPLBJKB_02032 0.74 -0.0
2,106,717 - OHPLBJKB_02032 0.87 +0.9
2,106,751 - +0.1
2,106,858 - -0.9

Or see this region's nucleotide sequence