Experiment: No phage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_01835 and OHPLBJKB_01836 are separated by 745 nucleotides OHPLBJKB_01836 and OHPLBJKB_01837 are separated by 2 nucleotides OHPLBJKB_01837 and OHPLBJKB_01838 are separated by 126 nucleotides
OHPLBJKB_01835: OHPLBJKB_01835 - hypothetical protein, at 1,912,234 to 1,912,512
_01835
OHPLBJKB_01836: OHPLBJKB_01836 - Flagellar transcriptional regulator FlhD, at 1,913,258 to 1,913,608
_01836
OHPLBJKB_01837: OHPLBJKB_01837 - Flagellar transcriptional regulator FlhC, at 1,913,611 to 1,914,189
_01837
OHPLBJKB_01838: OHPLBJKB_01838 - Motility protein A, at 1,914,316 to 1,915,203
_01838
Position (kb)
1913
1914 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1912.637 kb on - strand at 1912.640 kb on + strand at 1912.739 kb on + strand at 1912.740 kb on - strand at 1912.823 kb on - strand at 1912.836 kb on + strand at 1912.837 kb on - strand at 1912.837 kb on - strand at 1912.966 kb on + strand at 1913.028 kb on + strand at 1913.028 kb on + strand at 1913.029 kb on - strand at 1913.029 kb on - strand at 1913.029 kb on - strand at 1913.049 kb on - strand at 1913.080 kb on + strand at 1913.159 kb on + strand at 1913.165 kb on - strand at 1913.289 kb on - strand at 1913.289 kb on - strand at 1913.306 kb on + strand, within OHPLBJKB_01836 at 1913.311 kb on - strand, within OHPLBJKB_01836 at 1913.313 kb on + strand, within OHPLBJKB_01836 at 1913.354 kb on - strand, within OHPLBJKB_01836 at 1913.354 kb on - strand, within OHPLBJKB_01836 at 1913.714 kb on + strand, within OHPLBJKB_01837 at 1913.715 kb on - strand, within OHPLBJKB_01837 at 1913.715 kb on - strand, within OHPLBJKB_01837 at 1913.715 kb on - strand, within OHPLBJKB_01837 at 1913.715 kb on - strand, within OHPLBJKB_01837 at 1913.732 kb on + strand, within OHPLBJKB_01837 at 1913.742 kb on + strand, within OHPLBJKB_01837 at 1913.802 kb on + strand, within OHPLBJKB_01837 at 1913.841 kb on + strand, within OHPLBJKB_01837 at 1913.841 kb on + strand, within OHPLBJKB_01837 at 1913.914 kb on + strand, within OHPLBJKB_01837 at 1913.914 kb on + strand, within OHPLBJKB_01837 at 1914.042 kb on + strand, within OHPLBJKB_01837 at 1914.086 kb on + strand, within OHPLBJKB_01837 at 1914.086 kb on + strand, within OHPLBJKB_01837 at 1914.086 kb on + strand, within OHPLBJKB_01837 at 1914.087 kb on - strand, within OHPLBJKB_01837 at 1914.087 kb on - strand, within OHPLBJKB_01837 at 1914.110 kb on + strand, within OHPLBJKB_01837 at 1914.110 kb on + strand, within OHPLBJKB_01837 at 1914.121 kb on - strand, within OHPLBJKB_01837 at 1914.144 kb on + strand at 1914.176 kb on + strand at 1914.188 kb on - strand at 1914.321 kb on + strand at 1914.321 kb on + strand at 1914.321 kb on + strand at 1914.322 kb on - strand at 1914.326 kb on + strand at 1914.326 kb on + strand at 1914.327 kb on - strand at 1914.327 kb on - strand at 1914.329 kb on + strand at 1914.330 kb on - strand at 1914.330 kb on - strand at 1914.367 kb on + strand at 1914.400 kb on + strand at 1914.400 kb on + strand at 1914.400 kb on + strand at 1914.400 kb on + strand at 1914.401 kb on - strand at 1914.401 kb on - strand at 1914.478 kb on - strand, within OHPLBJKB_01838 at 1914.538 kb on + strand, within OHPLBJKB_01838 at 1914.539 kb on - strand, within OHPLBJKB_01838 at 1914.539 kb on - strand, within OHPLBJKB_01838 at 1914.539 kb on - strand, within OHPLBJKB_01838 at 1914.539 kb on - strand, within OHPLBJKB_01838 at 1914.539 kb on - strand, within OHPLBJKB_01838 at 1914.539 kb on - strand, within OHPLBJKB_01838 at 1914.539 kb on - strand, within OHPLBJKB_01838 at 1914.539 kb on - strand, within OHPLBJKB_01838 at 1914.540 kb on + strand, within OHPLBJKB_01838 at 1914.541 kb on - strand, within OHPLBJKB_01838
Per-strain Table
Position Strand Gene LocusTag Fraction No phage remove 1,912,637 - +0.0 1,912,640 + +3.0 1,912,739 + -0.7 1,912,740 - -0.6 1,912,823 - +0.8 1,912,836 + -0.5 1,912,837 - +0.6 1,912,837 - +0.3 1,912,966 + -0.1 1,913,028 + +0.4 1,913,028 + +0.1 1,913,029 - +0.9 1,913,029 - +1.6 1,913,029 - +0.6 1,913,049 - -0.9 1,913,080 + +0.7 1,913,159 + -0.5 1,913,165 - +0.8 1,913,289 - +0.6 1,913,289 - +0.6 1,913,306 + OHPLBJKB_01836 0.14 +0.2 1,913,311 - OHPLBJKB_01836 0.15 -0.1 1,913,313 + OHPLBJKB_01836 0.16 +1.5 1,913,354 - OHPLBJKB_01836 0.27 +0.3 1,913,354 - OHPLBJKB_01836 0.27 +0.9 1,913,714 + OHPLBJKB_01837 0.18 +0.2 1,913,715 - OHPLBJKB_01837 0.18 +0.7 1,913,715 - OHPLBJKB_01837 0.18 +0.7 1,913,715 - OHPLBJKB_01837 0.18 +0.8 1,913,715 - OHPLBJKB_01837 0.18 -0.5 1,913,732 + OHPLBJKB_01837 0.21 +0.5 1,913,742 + OHPLBJKB_01837 0.23 +1.0 1,913,802 + OHPLBJKB_01837 0.33 +2.5 1,913,841 + OHPLBJKB_01837 0.40 -0.5 1,913,841 + OHPLBJKB_01837 0.40 +0.6 1,913,914 + OHPLBJKB_01837 0.52 -0.3 1,913,914 + OHPLBJKB_01837 0.52 +0.6 1,914,042 + OHPLBJKB_01837 0.74 +1.8 1,914,086 + OHPLBJKB_01837 0.82 -0.0 1,914,086 + OHPLBJKB_01837 0.82 -0.3 1,914,086 + OHPLBJKB_01837 0.82 +0.1 1,914,087 - OHPLBJKB_01837 0.82 -1.0 1,914,087 - OHPLBJKB_01837 0.82 +0.2 1,914,110 + OHPLBJKB_01837 0.86 +0.7 1,914,110 + OHPLBJKB_01837 0.86 +1.1 1,914,121 - OHPLBJKB_01837 0.88 -0.1 1,914,144 + -0.1 1,914,176 + +0.4 1,914,188 - +1.1 1,914,321 + +0.0 1,914,321 + +1.3 1,914,321 + +0.4 1,914,322 - +0.1 1,914,326 + +1.8 1,914,326 + +0.9 1,914,327 - +0.7 1,914,327 - -0.5 1,914,329 + -1.1 1,914,330 - -0.7 1,914,330 - +1.4 1,914,367 + +0.3 1,914,400 + -0.6 1,914,400 + +1.2 1,914,400 + -0.2 1,914,400 + +0.0 1,914,401 - -1.3 1,914,401 - +2.2 1,914,478 - OHPLBJKB_01838 0.18 -1.2 1,914,538 + OHPLBJKB_01838 0.25 +0.8 1,914,539 - OHPLBJKB_01838 0.25 +0.1 1,914,539 - OHPLBJKB_01838 0.25 +0.3 1,914,539 - OHPLBJKB_01838 0.25 -0.3 1,914,539 - OHPLBJKB_01838 0.25 +0.5 1,914,539 - OHPLBJKB_01838 0.25 +0.7 1,914,539 - OHPLBJKB_01838 0.25 +1.3 1,914,539 - OHPLBJKB_01838 0.25 +0.1 1,914,539 - OHPLBJKB_01838 0.25 -0.0 1,914,540 + OHPLBJKB_01838 0.25 +0.3 1,914,541 - OHPLBJKB_01838 0.25 +0.5
Or see this region's nucleotide sequence