Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01723

Experiment: No phage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01721 and OHPLBJKB_01722 are separated by 37 nucleotidesOHPLBJKB_01722 and OHPLBJKB_01723 are separated by 193 nucleotidesOHPLBJKB_01723 and OHPLBJKB_01724 are separated by 100 nucleotidesOHPLBJKB_01724 and OHPLBJKB_01725 are separated by 452 nucleotides OHPLBJKB_01721: OHPLBJKB_01721 - HTH-type transcriptional regulator cbl, at 1,811,109 to 1,812,059 _01721 OHPLBJKB_01722: OHPLBJKB_01722 - tRNA-Asn, at 1,812,097 to 1,812,172 _01722 OHPLBJKB_01723: OHPLBJKB_01723 - putative FMN/FAD exporter YeeO, at 1,812,366 to 1,813,820 _01723 OHPLBJKB_01724: OHPLBJKB_01724 - tRNA-Asn, at 1,813,921 to 1,813,996 _01724 OHPLBJKB_01725: OHPLBJKB_01725 - putative transcriptional regulatory protein YeeN, at 1,814,449 to 1,815,165 _01725 Position (kb) 1812 1813 1814Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1811.378 kb on + strand, within OHPLBJKB_01721at 1811.378 kb on + strand, within OHPLBJKB_01721at 1811.379 kb on - strand, within OHPLBJKB_01721at 1811.411 kb on + strand, within OHPLBJKB_01721at 1811.412 kb on - strand, within OHPLBJKB_01721at 1811.426 kb on + strand, within OHPLBJKB_01721at 1811.426 kb on + strand, within OHPLBJKB_01721at 1811.426 kb on + strand, within OHPLBJKB_01721at 1811.426 kb on + strand, within OHPLBJKB_01721at 1811.427 kb on - strand, within OHPLBJKB_01721at 1811.427 kb on - strand, within OHPLBJKB_01721at 1811.612 kb on + strand, within OHPLBJKB_01721at 1811.612 kb on + strand, within OHPLBJKB_01721at 1811.613 kb on - strand, within OHPLBJKB_01721at 1811.613 kb on - strand, within OHPLBJKB_01721at 1811.613 kb on - strand, within OHPLBJKB_01721at 1811.613 kb on - strand, within OHPLBJKB_01721at 1811.613 kb on - strand, within OHPLBJKB_01721at 1811.697 kb on + strand, within OHPLBJKB_01721at 1811.727 kb on - strand, within OHPLBJKB_01721at 1811.765 kb on + strand, within OHPLBJKB_01721at 1811.765 kb on + strand, within OHPLBJKB_01721at 1811.765 kb on + strand, within OHPLBJKB_01721at 1811.765 kb on + strand, within OHPLBJKB_01721at 1811.765 kb on + strand, within OHPLBJKB_01721at 1811.765 kb on + strand, within OHPLBJKB_01721at 1811.765 kb on + strand, within OHPLBJKB_01721at 1811.766 kb on - strand, within OHPLBJKB_01721at 1811.766 kb on - strand, within OHPLBJKB_01721at 1811.766 kb on - strand, within OHPLBJKB_01721at 1811.766 kb on - strand, within OHPLBJKB_01721at 1811.766 kb on - strand, within OHPLBJKB_01721at 1811.766 kb on - strand, within OHPLBJKB_01721at 1811.766 kb on - strand, within OHPLBJKB_01721at 1811.766 kb on - strand, within OHPLBJKB_01721at 1811.766 kb on - strand, within OHPLBJKB_01721at 1811.766 kb on - strand, within OHPLBJKB_01721at 1811.770 kb on + strand, within OHPLBJKB_01721at 1811.771 kb on - strand, within OHPLBJKB_01721at 1811.773 kb on + strand, within OHPLBJKB_01721at 1811.773 kb on + strand, within OHPLBJKB_01721at 1811.773 kb on + strand, within OHPLBJKB_01721at 1811.774 kb on - strand, within OHPLBJKB_01721at 1811.774 kb on - strand, within OHPLBJKB_01721at 1811.798 kb on + strand, within OHPLBJKB_01721at 1811.805 kb on + strand, within OHPLBJKB_01721at 1811.806 kb on - strand, within OHPLBJKB_01721at 1811.833 kb on + strand, within OHPLBJKB_01721at 1811.912 kb on + strand, within OHPLBJKB_01721at 1811.913 kb on - strand, within OHPLBJKB_01721at 1811.917 kb on + strand, within OHPLBJKB_01721at 1811.917 kb on + strand, within OHPLBJKB_01721at 1811.917 kb on + strand, within OHPLBJKB_01721at 1811.918 kb on - strand, within OHPLBJKB_01721at 1811.918 kb on - strand, within OHPLBJKB_01721at 1811.951 kb on + strand, within OHPLBJKB_01721at 1811.951 kb on + strand, within OHPLBJKB_01721at 1811.952 kb on - strand, within OHPLBJKB_01721at 1811.952 kb on - strand, within OHPLBJKB_01721at 1811.952 kb on - strand, within OHPLBJKB_01721at 1811.955 kb on + strand, within OHPLBJKB_01721at 1811.956 kb on - strand, within OHPLBJKB_01721at 1811.956 kb on - strand, within OHPLBJKB_01721at 1811.956 kb on - strand, within OHPLBJKB_01721at 1811.956 kb on - strand, within OHPLBJKB_01721at 1811.956 kb on - strand, within OHPLBJKB_01721at 1811.956 kb on - strand, within OHPLBJKB_01721at 1811.981 kb on + strandat 1812.005 kb on + strandat 1812.057 kb on + strandat 1812.058 kb on - strandat 1812.253 kb on + strandat 1812.356 kb on - strandat 1812.433 kb on - strandat 1812.433 kb on - strandat 1812.476 kb on + strandat 1812.587 kb on + strand, within OHPLBJKB_01723at 1812.588 kb on - strand, within OHPLBJKB_01723at 1812.626 kb on + strand, within OHPLBJKB_01723at 1812.626 kb on + strand, within OHPLBJKB_01723at 1812.627 kb on - strand, within OHPLBJKB_01723at 1812.627 kb on - strand, within OHPLBJKB_01723at 1812.629 kb on + strand, within OHPLBJKB_01723at 1812.647 kb on + strand, within OHPLBJKB_01723at 1812.740 kb on + strand, within OHPLBJKB_01723at 1812.740 kb on + strand, within OHPLBJKB_01723at 1812.741 kb on - strand, within OHPLBJKB_01723at 1812.741 kb on - strand, within OHPLBJKB_01723at 1812.800 kb on + strand, within OHPLBJKB_01723at 1812.819 kb on + strand, within OHPLBJKB_01723at 1812.819 kb on + strand, within OHPLBJKB_01723at 1812.820 kb on - strand, within OHPLBJKB_01723at 1812.844 kb on - strand, within OHPLBJKB_01723at 1812.941 kb on + strand, within OHPLBJKB_01723at 1812.947 kb on + strand, within OHPLBJKB_01723at 1812.947 kb on + strand, within OHPLBJKB_01723at 1812.948 kb on - strand, within OHPLBJKB_01723at 1813.037 kb on + strand, within OHPLBJKB_01723at 1813.037 kb on + strand, within OHPLBJKB_01723at 1813.110 kb on + strand, within OHPLBJKB_01723at 1813.137 kb on - strand, within OHPLBJKB_01723at 1813.186 kb on + strand, within OHPLBJKB_01723at 1813.190 kb on + strand, within OHPLBJKB_01723at 1813.191 kb on - strand, within OHPLBJKB_01723at 1813.514 kb on - strand, within OHPLBJKB_01723at 1813.522 kb on + strand, within OHPLBJKB_01723at 1813.522 kb on + strand, within OHPLBJKB_01723at 1813.526 kb on + strand, within OHPLBJKB_01723at 1813.526 kb on + strand, within OHPLBJKB_01723at 1813.526 kb on + strand, within OHPLBJKB_01723at 1813.527 kb on - strand, within OHPLBJKB_01723at 1813.533 kb on - strand, within OHPLBJKB_01723at 1813.569 kb on - strand, within OHPLBJKB_01723at 1813.636 kb on + strand, within OHPLBJKB_01723at 1813.637 kb on - strand, within OHPLBJKB_01723at 1813.637 kb on - strand, within OHPLBJKB_01723at 1813.731 kb on + strandat 1814.019 kb on + strandat 1814.019 kb on + strandat 1814.199 kb on - strandat 1814.199 kb on - strandat 1814.199 kb on - strandat 1814.199 kb on - strandat 1814.271 kb on + strandat 1814.271 kb on + strandat 1814.272 kb on - strandat 1814.668 kb on - strand, within OHPLBJKB_01725at 1814.780 kb on + strand, within OHPLBJKB_01725

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage
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1,811,378 + OHPLBJKB_01721 0.28 -0.3
1,811,378 + OHPLBJKB_01721 0.28 -2.5
1,811,379 - OHPLBJKB_01721 0.28 +0.7
1,811,411 + OHPLBJKB_01721 0.32 -0.4
1,811,412 - OHPLBJKB_01721 0.32 +0.3
1,811,426 + OHPLBJKB_01721 0.33 +0.8
1,811,426 + OHPLBJKB_01721 0.33 +0.1
1,811,426 + OHPLBJKB_01721 0.33 -0.7
1,811,426 + OHPLBJKB_01721 0.33 -0.4
1,811,427 - OHPLBJKB_01721 0.33 +2.1
1,811,427 - OHPLBJKB_01721 0.33 +0.7
1,811,612 + OHPLBJKB_01721 0.53 -0.3
1,811,612 + OHPLBJKB_01721 0.53 -1.5
1,811,613 - OHPLBJKB_01721 0.53 +0.4
1,811,613 - OHPLBJKB_01721 0.53 -2.9
1,811,613 - OHPLBJKB_01721 0.53 +0.7
1,811,613 - OHPLBJKB_01721 0.53 -0.2
1,811,613 - OHPLBJKB_01721 0.53 -0.8
1,811,697 + OHPLBJKB_01721 0.62 +1.2
1,811,727 - OHPLBJKB_01721 0.65 -0.4
1,811,765 + OHPLBJKB_01721 0.69 +1.1
1,811,765 + OHPLBJKB_01721 0.69 +1.2
1,811,765 + OHPLBJKB_01721 0.69 +1.3
1,811,765 + OHPLBJKB_01721 0.69 +1.8
1,811,765 + OHPLBJKB_01721 0.69 -0.4
1,811,765 + OHPLBJKB_01721 0.69 +1.3
1,811,765 + OHPLBJKB_01721 0.69 -0.6
1,811,766 - OHPLBJKB_01721 0.69 +0.1
1,811,766 - OHPLBJKB_01721 0.69 -1.4
1,811,766 - OHPLBJKB_01721 0.69 -0.4
1,811,766 - OHPLBJKB_01721 0.69 +0.1
1,811,766 - OHPLBJKB_01721 0.69 +0.5
1,811,766 - OHPLBJKB_01721 0.69 -0.1
1,811,766 - OHPLBJKB_01721 0.69 -1.3
1,811,766 - OHPLBJKB_01721 0.69 +0.8
1,811,766 - OHPLBJKB_01721 0.69 -1.7
1,811,766 - OHPLBJKB_01721 0.69 -0.2
1,811,770 + OHPLBJKB_01721 0.70 +1.4
1,811,771 - OHPLBJKB_01721 0.70 +0.8
1,811,773 + OHPLBJKB_01721 0.70 +0.4
1,811,773 + OHPLBJKB_01721 0.70 -0.1
1,811,773 + OHPLBJKB_01721 0.70 -0.2
1,811,774 - OHPLBJKB_01721 0.70 -0.3
1,811,774 - OHPLBJKB_01721 0.70 +0.2
1,811,798 + OHPLBJKB_01721 0.72 +0.6
1,811,805 + OHPLBJKB_01721 0.73 -1.7
1,811,806 - OHPLBJKB_01721 0.73 -0.3
1,811,833 + OHPLBJKB_01721 0.76 -0.8
1,811,912 + OHPLBJKB_01721 0.84 +0.7
1,811,913 - OHPLBJKB_01721 0.85 -0.1
1,811,917 + OHPLBJKB_01721 0.85 +0.0
1,811,917 + OHPLBJKB_01721 0.85 -1.4
1,811,917 + OHPLBJKB_01721 0.85 +1.0
1,811,918 - OHPLBJKB_01721 0.85 +0.1
1,811,918 - OHPLBJKB_01721 0.85 +1.0
1,811,951 + OHPLBJKB_01721 0.89 -0.1
1,811,951 + OHPLBJKB_01721 0.89 -1.5
1,811,952 - OHPLBJKB_01721 0.89 -0.4
1,811,952 - OHPLBJKB_01721 0.89 +0.2
1,811,952 - OHPLBJKB_01721 0.89 -0.2
1,811,955 + OHPLBJKB_01721 0.89 +0.3
1,811,956 - OHPLBJKB_01721 0.89 +2.0
1,811,956 - OHPLBJKB_01721 0.89 +0.4
1,811,956 - OHPLBJKB_01721 0.89 +1.3
1,811,956 - OHPLBJKB_01721 0.89 +0.1
1,811,956 - OHPLBJKB_01721 0.89 +0.1
1,811,956 - OHPLBJKB_01721 0.89 -0.5
1,811,981 + -0.6
1,812,005 + +1.0
1,812,057 + -2.8
1,812,058 - -0.3
1,812,253 + -0.2
1,812,356 - -0.3
1,812,433 - +0.4
1,812,433 - -0.7
1,812,476 + +0.8
1,812,587 + OHPLBJKB_01723 0.15 +0.0
1,812,588 - OHPLBJKB_01723 0.15 +0.8
1,812,626 + OHPLBJKB_01723 0.18 -0.3
1,812,626 + OHPLBJKB_01723 0.18 +2.4
1,812,627 - OHPLBJKB_01723 0.18 -1.1
1,812,627 - OHPLBJKB_01723 0.18 -0.3
1,812,629 + OHPLBJKB_01723 0.18 +0.7
1,812,647 + OHPLBJKB_01723 0.19 +1.0
1,812,740 + OHPLBJKB_01723 0.26 -2.4
1,812,740 + OHPLBJKB_01723 0.26 -0.2
1,812,741 - OHPLBJKB_01723 0.26 -1.2
1,812,741 - OHPLBJKB_01723 0.26 -0.9
1,812,800 + OHPLBJKB_01723 0.30 +0.4
1,812,819 + OHPLBJKB_01723 0.31 -1.7
1,812,819 + OHPLBJKB_01723 0.31 -0.6
1,812,820 - OHPLBJKB_01723 0.31 -0.2
1,812,844 - OHPLBJKB_01723 0.33 -1.3
1,812,941 + OHPLBJKB_01723 0.40 -1.7
1,812,947 + OHPLBJKB_01723 0.40 -0.7
1,812,947 + OHPLBJKB_01723 0.40 +0.5
1,812,948 - OHPLBJKB_01723 0.40 -1.9
1,813,037 + OHPLBJKB_01723 0.46 -0.1
1,813,037 + OHPLBJKB_01723 0.46 -0.6
1,813,110 + OHPLBJKB_01723 0.51 +0.1
1,813,137 - OHPLBJKB_01723 0.53 +0.3
1,813,186 + OHPLBJKB_01723 0.56 -0.5
1,813,190 + OHPLBJKB_01723 0.57 +0.2
1,813,191 - OHPLBJKB_01723 0.57 -0.1
1,813,514 - OHPLBJKB_01723 0.79 -0.5
1,813,522 + OHPLBJKB_01723 0.79 -1.5
1,813,522 + OHPLBJKB_01723 0.79 +0.8
1,813,526 + OHPLBJKB_01723 0.80 +0.1
1,813,526 + OHPLBJKB_01723 0.80 +0.4
1,813,526 + OHPLBJKB_01723 0.80 +1.0
1,813,527 - OHPLBJKB_01723 0.80 +0.8
1,813,533 - OHPLBJKB_01723 0.80 -0.9
1,813,569 - OHPLBJKB_01723 0.83 +0.1
1,813,636 + OHPLBJKB_01723 0.87 -1.4
1,813,637 - OHPLBJKB_01723 0.87 +0.4
1,813,637 - OHPLBJKB_01723 0.87 +0.3
1,813,731 + -3.3
1,814,019 + +0.8
1,814,019 + -2.3
1,814,199 - +0.3
1,814,199 - -0.5
1,814,199 - -2.0
1,814,199 - +1.0
1,814,271 + -0.7
1,814,271 + -1.8
1,814,272 - -0.2
1,814,668 - OHPLBJKB_01725 0.31 -1.7
1,814,780 + OHPLBJKB_01725 0.46 +1.4

Or see this region's nucleotide sequence