Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01154

Experiment: No phage

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_01153 and OHPLBJKB_01154 are separated by 60 nucleotidesOHPLBJKB_01154 and OHPLBJKB_01155 are separated by 44 nucleotides OHPLBJKB_01153: OHPLBJKB_01153 - Transcriptional regulatory protein GlrR, at 1,183,489 to 1,184,823 _01153 OHPLBJKB_01154: OHPLBJKB_01154 - Nitrogen regulatory protein P-II 1, at 1,184,884 to 1,185,222 _01154 OHPLBJKB_01155: OHPLBJKB_01155 - Flavohemoprotein, at 1,185,267 to 1,186,457 _01155 Position (kb) 1184 1185 1186Strain fitness (log2 ratio) -2 -1 0 1at 1184.052 kb on + strand, within OHPLBJKB_01153at 1184.053 kb on - strand, within OHPLBJKB_01153at 1184.053 kb on - strand, within OHPLBJKB_01153at 1184.053 kb on - strand, within OHPLBJKB_01153at 1184.058 kb on + strand, within OHPLBJKB_01153at 1184.058 kb on + strand, within OHPLBJKB_01153at 1184.059 kb on - strand, within OHPLBJKB_01153at 1184.059 kb on - strand, within OHPLBJKB_01153at 1184.061 kb on + strand, within OHPLBJKB_01153at 1184.061 kb on + strand, within OHPLBJKB_01153at 1184.183 kb on + strand, within OHPLBJKB_01153at 1184.184 kb on - strand, within OHPLBJKB_01153at 1184.368 kb on + strand, within OHPLBJKB_01153at 1184.369 kb on - strand, within OHPLBJKB_01153at 1184.475 kb on + strand, within OHPLBJKB_01153at 1184.476 kb on - strand, within OHPLBJKB_01153at 1184.673 kb on + strand, within OHPLBJKB_01153at 1184.674 kb on - strand, within OHPLBJKB_01153at 1184.692 kb on + strandat 1184.693 kb on - strandat 1184.833 kb on - strandat 1184.833 kb on - strandat 1184.839 kb on + strandat 1184.839 kb on + strandat 1184.880 kb on + strandat 1184.880 kb on + strandat 1184.881 kb on - strandat 1184.905 kb on - strandat 1184.905 kb on - strandat 1184.955 kb on + strand, within OHPLBJKB_01154at 1184.955 kb on + strand, within OHPLBJKB_01154at 1185.034 kb on + strand, within OHPLBJKB_01154at 1185.034 kb on + strand, within OHPLBJKB_01154at 1185.034 kb on + strand, within OHPLBJKB_01154at 1185.034 kb on + strand, within OHPLBJKB_01154at 1185.034 kb on + strand, within OHPLBJKB_01154at 1185.034 kb on + strand, within OHPLBJKB_01154at 1185.034 kb on + strand, within OHPLBJKB_01154at 1185.035 kb on - strand, within OHPLBJKB_01154at 1185.036 kb on + strand, within OHPLBJKB_01154at 1185.036 kb on + strand, within OHPLBJKB_01154at 1185.036 kb on + strand, within OHPLBJKB_01154at 1185.037 kb on - strand, within OHPLBJKB_01154at 1185.037 kb on - strand, within OHPLBJKB_01154at 1185.037 kb on - strand, within OHPLBJKB_01154at 1185.037 kb on - strand, within OHPLBJKB_01154at 1185.037 kb on - strand, within OHPLBJKB_01154at 1185.037 kb on - strand, within OHPLBJKB_01154at 1185.269 kb on - strandat 1185.298 kb on + strandat 1185.299 kb on - strandat 1185.379 kb on + strandat 1185.772 kb on - strand, within OHPLBJKB_01155at 1185.772 kb on - strand, within OHPLBJKB_01155at 1185.960 kb on - strand, within OHPLBJKB_01155at 1185.960 kb on - strand, within OHPLBJKB_01155at 1186.042 kb on + strand, within OHPLBJKB_01155at 1186.068 kb on + strand, within OHPLBJKB_01155at 1186.068 kb on + strand, within OHPLBJKB_01155at 1186.069 kb on - strand, within OHPLBJKB_01155at 1186.069 kb on - strand, within OHPLBJKB_01155at 1186.174 kb on + strand, within OHPLBJKB_01155at 1186.175 kb on - strand, within OHPLBJKB_01155at 1186.175 kb on - strand, within OHPLBJKB_01155

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No phage
remove
1,184,052 + OHPLBJKB_01153 0.42 -1.3
1,184,053 - OHPLBJKB_01153 0.42 -0.6
1,184,053 - OHPLBJKB_01153 0.42 -0.1
1,184,053 - OHPLBJKB_01153 0.42 +1.3
1,184,058 + OHPLBJKB_01153 0.43 +0.1
1,184,058 + OHPLBJKB_01153 0.43 +0.3
1,184,059 - OHPLBJKB_01153 0.43 -0.1
1,184,059 - OHPLBJKB_01153 0.43 -1.0
1,184,061 + OHPLBJKB_01153 0.43 +0.7
1,184,061 + OHPLBJKB_01153 0.43 +0.0
1,184,183 + OHPLBJKB_01153 0.52 +0.2
1,184,184 - OHPLBJKB_01153 0.52 -1.1
1,184,368 + OHPLBJKB_01153 0.66 +1.1
1,184,369 - OHPLBJKB_01153 0.66 -0.7
1,184,475 + OHPLBJKB_01153 0.74 -2.3
1,184,476 - OHPLBJKB_01153 0.74 +0.4
1,184,673 + OHPLBJKB_01153 0.89 +1.3
1,184,674 - OHPLBJKB_01153 0.89 -0.4
1,184,692 + -1.1
1,184,693 - -0.0
1,184,833 - +0.6
1,184,833 - -1.1
1,184,839 + -0.1
1,184,839 + +0.7
1,184,880 + +0.7
1,184,880 + -0.1
1,184,881 - -1.2
1,184,905 - -1.6
1,184,905 - +0.0
1,184,955 + OHPLBJKB_01154 0.21 -1.4
1,184,955 + OHPLBJKB_01154 0.21 -1.4
1,185,034 + OHPLBJKB_01154 0.44 -0.5
1,185,034 + OHPLBJKB_01154 0.44 -1.2
1,185,034 + OHPLBJKB_01154 0.44 -0.9
1,185,034 + OHPLBJKB_01154 0.44 -1.4
1,185,034 + OHPLBJKB_01154 0.44 -1.9
1,185,034 + OHPLBJKB_01154 0.44 -1.5
1,185,034 + OHPLBJKB_01154 0.44 -1.3
1,185,035 - OHPLBJKB_01154 0.45 -1.5
1,185,036 + OHPLBJKB_01154 0.45 -1.6
1,185,036 + OHPLBJKB_01154 0.45 -0.4
1,185,036 + OHPLBJKB_01154 0.45 -1.2
1,185,037 - OHPLBJKB_01154 0.45 -0.1
1,185,037 - OHPLBJKB_01154 0.45 +0.3
1,185,037 - OHPLBJKB_01154 0.45 -0.4
1,185,037 - OHPLBJKB_01154 0.45 -2.2
1,185,037 - OHPLBJKB_01154 0.45 +0.7
1,185,037 - OHPLBJKB_01154 0.45 -0.7
1,185,269 - +0.0
1,185,298 + -1.1
1,185,299 - +1.6
1,185,379 + +0.9
1,185,772 - OHPLBJKB_01155 0.42 -0.3
1,185,772 - OHPLBJKB_01155 0.42 -1.3
1,185,960 - OHPLBJKB_01155 0.58 -0.2
1,185,960 - OHPLBJKB_01155 0.58 -2.1
1,186,042 + OHPLBJKB_01155 0.65 -1.0
1,186,068 + OHPLBJKB_01155 0.67 -0.1
1,186,068 + OHPLBJKB_01155 0.67 +0.9
1,186,069 - OHPLBJKB_01155 0.67 -1.4
1,186,069 - OHPLBJKB_01155 0.67 -0.8
1,186,174 + OHPLBJKB_01155 0.76 -0.0
1,186,175 - OHPLBJKB_01155 0.76 -1.0
1,186,175 - OHPLBJKB_01155 0.76 +0.5

Or see this region's nucleotide sequence