Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01109

Experiment: No phage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01108 and OHPLBJKB_01109 are separated by 42 nucleotidesOHPLBJKB_01109 and OHPLBJKB_01110 are separated by 248 nucleotidesOHPLBJKB_01110 and OHPLBJKB_01111 are separated by 270 nucleotides OHPLBJKB_01108: OHPLBJKB_01108 - T-protein, at 1,130,944 to 1,132,065 _01108 OHPLBJKB_01109: OHPLBJKB_01109 - P-protein, at 1,132,108 to 1,133,268 _01109 OHPLBJKB_01110: OHPLBJKB_01110 - Ribosome-associated inhibitor A, at 1,133,517 to 1,133,858 _01110 OHPLBJKB_01111: OHPLBJKB_01111 - Outer membrane protein assembly factor BamD, at 1,134,129 to 1,134,866 _01111 Position (kb) 1132 1133 1134Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1131.190 kb on + strand, within OHPLBJKB_01108at 1131.191 kb on - strand, within OHPLBJKB_01108at 1131.217 kb on - strand, within OHPLBJKB_01108at 1131.217 kb on - strand, within OHPLBJKB_01108at 1131.217 kb on - strand, within OHPLBJKB_01108at 1131.217 kb on - strand, within OHPLBJKB_01108at 1131.217 kb on - strand, within OHPLBJKB_01108at 1131.303 kb on - strand, within OHPLBJKB_01108at 1131.357 kb on + strand, within OHPLBJKB_01108at 1131.358 kb on - strand, within OHPLBJKB_01108at 1131.388 kb on - strand, within OHPLBJKB_01108at 1131.405 kb on + strand, within OHPLBJKB_01108at 1131.428 kb on + strand, within OHPLBJKB_01108at 1131.450 kb on + strand, within OHPLBJKB_01108at 1131.450 kb on + strand, within OHPLBJKB_01108at 1131.451 kb on - strand, within OHPLBJKB_01108at 1131.489 kb on - strand, within OHPLBJKB_01108at 1131.597 kb on + strand, within OHPLBJKB_01108at 1131.597 kb on + strand, within OHPLBJKB_01108at 1131.597 kb on + strand, within OHPLBJKB_01108at 1131.597 kb on + strand, within OHPLBJKB_01108at 1131.598 kb on - strand, within OHPLBJKB_01108at 1131.598 kb on - strand, within OHPLBJKB_01108at 1131.610 kb on + strand, within OHPLBJKB_01108at 1131.610 kb on + strand, within OHPLBJKB_01108at 1131.610 kb on + strand, within OHPLBJKB_01108at 1131.610 kb on + strand, within OHPLBJKB_01108at 1131.660 kb on + strand, within OHPLBJKB_01108at 1131.661 kb on - strand, within OHPLBJKB_01108at 1131.796 kb on + strand, within OHPLBJKB_01108at 1131.797 kb on - strand, within OHPLBJKB_01108at 1131.850 kb on + strand, within OHPLBJKB_01108at 1131.851 kb on - strand, within OHPLBJKB_01108at 1131.851 kb on - strand, within OHPLBJKB_01108at 1131.861 kb on + strand, within OHPLBJKB_01108at 1131.861 kb on + strand, within OHPLBJKB_01108at 1131.861 kb on + strand, within OHPLBJKB_01108at 1131.861 kb on + strand, within OHPLBJKB_01108at 1131.861 kb on + strand, within OHPLBJKB_01108at 1131.862 kb on - strand, within OHPLBJKB_01108at 1131.862 kb on - strand, within OHPLBJKB_01108at 1131.864 kb on + strand, within OHPLBJKB_01108at 1131.864 kb on + strand, within OHPLBJKB_01108at 1131.864 kb on + strand, within OHPLBJKB_01108at 1131.864 kb on + strand, within OHPLBJKB_01108at 1131.864 kb on + strand, within OHPLBJKB_01108at 1131.865 kb on - strand, within OHPLBJKB_01108at 1131.865 kb on - strand, within OHPLBJKB_01108at 1131.865 kb on - strand, within OHPLBJKB_01108at 1131.865 kb on - strand, within OHPLBJKB_01108at 1131.865 kb on - strand, within OHPLBJKB_01108at 1131.865 kb on - strand, within OHPLBJKB_01108at 1131.880 kb on - strand, within OHPLBJKB_01108at 1131.880 kb on - strand, within OHPLBJKB_01108at 1131.891 kb on - strand, within OHPLBJKB_01108at 1131.901 kb on + strand, within OHPLBJKB_01108at 1131.904 kb on + strand, within OHPLBJKB_01108at 1131.904 kb on + strand, within OHPLBJKB_01108at 1131.904 kb on + strand, within OHPLBJKB_01108at 1131.904 kb on + strand, within OHPLBJKB_01108at 1131.904 kb on + strand, within OHPLBJKB_01108at 1131.904 kb on + strand, within OHPLBJKB_01108at 1131.905 kb on - strand, within OHPLBJKB_01108at 1131.905 kb on - strand, within OHPLBJKB_01108at 1131.905 kb on - strand, within OHPLBJKB_01108at 1131.905 kb on - strand, within OHPLBJKB_01108at 1131.905 kb on - strand, within OHPLBJKB_01108at 1131.906 kb on + strand, within OHPLBJKB_01108at 1131.906 kb on + strand, within OHPLBJKB_01108at 1131.907 kb on - strand, within OHPLBJKB_01108at 1132.035 kb on - strandat 1132.063 kb on + strandat 1132.064 kb on - strandat 1132.064 kb on - strandat 1132.067 kb on - strandat 1132.129 kb on + strandat 1132.129 kb on + strandat 1132.129 kb on + strandat 1132.130 kb on - strandat 1132.130 kb on - strandat 1132.157 kb on - strandat 1132.241 kb on + strand, within OHPLBJKB_01109at 1132.241 kb on + strand, within OHPLBJKB_01109at 1132.241 kb on + strand, within OHPLBJKB_01109at 1132.241 kb on + strand, within OHPLBJKB_01109at 1132.264 kb on - strand, within OHPLBJKB_01109at 1132.296 kb on + strand, within OHPLBJKB_01109at 1132.297 kb on - strand, within OHPLBJKB_01109at 1132.297 kb on - strand, within OHPLBJKB_01109at 1132.404 kb on + strand, within OHPLBJKB_01109at 1132.475 kb on - strand, within OHPLBJKB_01109at 1132.475 kb on - strand, within OHPLBJKB_01109at 1132.488 kb on - strand, within OHPLBJKB_01109at 1132.488 kb on - strand, within OHPLBJKB_01109at 1132.569 kb on + strand, within OHPLBJKB_01109at 1132.569 kb on + strand, within OHPLBJKB_01109at 1132.569 kb on + strand, within OHPLBJKB_01109at 1132.569 kb on + strand, within OHPLBJKB_01109at 1132.578 kb on + strand, within OHPLBJKB_01109at 1132.580 kb on + strand, within OHPLBJKB_01109at 1132.581 kb on - strand, within OHPLBJKB_01109at 1132.649 kb on + strand, within OHPLBJKB_01109at 1132.656 kb on + strand, within OHPLBJKB_01109at 1132.670 kb on - strand, within OHPLBJKB_01109at 1132.707 kb on + strand, within OHPLBJKB_01109at 1132.708 kb on - strand, within OHPLBJKB_01109at 1132.743 kb on + strand, within OHPLBJKB_01109at 1132.744 kb on - strand, within OHPLBJKB_01109at 1132.744 kb on - strand, within OHPLBJKB_01109at 1132.760 kb on + strand, within OHPLBJKB_01109at 1132.760 kb on + strand, within OHPLBJKB_01109at 1132.771 kb on + strand, within OHPLBJKB_01109at 1132.772 kb on - strand, within OHPLBJKB_01109at 1132.789 kb on - strand, within OHPLBJKB_01109at 1132.802 kb on - strand, within OHPLBJKB_01109at 1132.802 kb on - strand, within OHPLBJKB_01109at 1132.802 kb on - strand, within OHPLBJKB_01109at 1132.839 kb on + strand, within OHPLBJKB_01109at 1132.839 kb on + strand, within OHPLBJKB_01109at 1132.902 kb on - strand, within OHPLBJKB_01109at 1133.011 kb on + strand, within OHPLBJKB_01109at 1133.012 kb on - strand, within OHPLBJKB_01109at 1133.050 kb on - strand, within OHPLBJKB_01109at 1133.054 kb on + strand, within OHPLBJKB_01109at 1133.054 kb on + strand, within OHPLBJKB_01109at 1133.055 kb on - strand, within OHPLBJKB_01109at 1133.055 kb on - strand, within OHPLBJKB_01109at 1133.088 kb on + strand, within OHPLBJKB_01109at 1133.089 kb on - strand, within OHPLBJKB_01109at 1133.124 kb on + strand, within OHPLBJKB_01109at 1133.125 kb on - strand, within OHPLBJKB_01109at 1133.198 kb on - strandat 1133.207 kb on - strandat 1133.268 kb on + strandat 1133.269 kb on - strandat 1133.319 kb on + strandat 1133.402 kb on + strandat 1133.402 kb on + strandat 1133.425 kb on + strandat 1133.425 kb on + strandat 1133.435 kb on + strandat 1133.439 kb on - strandat 1133.508 kb on + strandat 1133.508 kb on + strandat 1133.509 kb on - strandat 1133.510 kb on + strandat 1133.510 kb on + strandat 1133.519 kb on - strandat 1133.601 kb on - strand, within OHPLBJKB_01110at 1133.647 kb on + strand, within OHPLBJKB_01110at 1133.648 kb on - strand, within OHPLBJKB_01110at 1133.648 kb on - strand, within OHPLBJKB_01110at 1133.648 kb on - strand, within OHPLBJKB_01110at 1133.651 kb on + strand, within OHPLBJKB_01110at 1133.651 kb on + strand, within OHPLBJKB_01110at 1133.651 kb on + strand, within OHPLBJKB_01110at 1133.651 kb on + strand, within OHPLBJKB_01110at 1133.651 kb on + strand, within OHPLBJKB_01110at 1133.652 kb on - strand, within OHPLBJKB_01110at 1133.652 kb on - strand, within OHPLBJKB_01110at 1133.652 kb on - strand, within OHPLBJKB_01110at 1133.652 kb on - strand, within OHPLBJKB_01110at 1133.652 kb on - strand, within OHPLBJKB_01110at 1133.688 kb on - strand, within OHPLBJKB_01110at 1133.693 kb on + strand, within OHPLBJKB_01110at 1133.694 kb on - strand, within OHPLBJKB_01110at 1133.694 kb on - strand, within OHPLBJKB_01110at 1133.694 kb on - strand, within OHPLBJKB_01110at 1133.745 kb on - strand, within OHPLBJKB_01110at 1133.745 kb on - strand, within OHPLBJKB_01110at 1133.745 kb on - strand, within OHPLBJKB_01110at 1133.754 kb on - strand, within OHPLBJKB_01110at 1133.843 kb on + strandat 1133.844 kb on - strandat 1133.858 kb on + strandat 1133.858 kb on + strandat 1133.899 kb on + strandat 1133.900 kb on - strandat 1134.012 kb on - strandat 1134.028 kb on + strandat 1134.028 kb on + strandat 1134.029 kb on - strandat 1134.130 kb on + strandat 1134.130 kb on + strandat 1134.131 kb on - strandat 1134.134 kb on + strandat 1134.134 kb on + strandat 1134.134 kb on + strandat 1134.134 kb on + strandat 1134.134 kb on + strandat 1134.134 kb on + strandat 1134.134 kb on + strandat 1134.134 kb on + strandat 1134.135 kb on - strandat 1134.135 kb on - strandat 1134.135 kb on - strandat 1134.135 kb on - strandat 1134.135 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage
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1,131,190 + OHPLBJKB_01108 0.22 +1.0
1,131,191 - OHPLBJKB_01108 0.22 -0.9
1,131,217 - OHPLBJKB_01108 0.24 -0.2
1,131,217 - OHPLBJKB_01108 0.24 -0.1
1,131,217 - OHPLBJKB_01108 0.24 +1.3
1,131,217 - OHPLBJKB_01108 0.24 +1.1
1,131,217 - OHPLBJKB_01108 0.24 +0.1
1,131,303 - OHPLBJKB_01108 0.32 +1.5
1,131,357 + OHPLBJKB_01108 0.37 -0.2
1,131,358 - OHPLBJKB_01108 0.37 +1.1
1,131,388 - OHPLBJKB_01108 0.40 +0.1
1,131,405 + OHPLBJKB_01108 0.41 +1.5
1,131,428 + OHPLBJKB_01108 0.43 -0.9
1,131,450 + OHPLBJKB_01108 0.45 -1.0
1,131,450 + OHPLBJKB_01108 0.45 +0.4
1,131,451 - OHPLBJKB_01108 0.45 +0.4
1,131,489 - OHPLBJKB_01108 0.49 +0.3
1,131,597 + OHPLBJKB_01108 0.58 +0.6
1,131,597 + OHPLBJKB_01108 0.58 +1.2
1,131,597 + OHPLBJKB_01108 0.58 +1.1
1,131,597 + OHPLBJKB_01108 0.58 -1.9
1,131,598 - OHPLBJKB_01108 0.58 +1.0
1,131,598 - OHPLBJKB_01108 0.58 +0.3
1,131,610 + OHPLBJKB_01108 0.59 +0.1
1,131,610 + OHPLBJKB_01108 0.59 +0.2
1,131,610 + OHPLBJKB_01108 0.59 +1.3
1,131,610 + OHPLBJKB_01108 0.59 -0.1
1,131,660 + OHPLBJKB_01108 0.64 +0.0
1,131,661 - OHPLBJKB_01108 0.64 -1.0
1,131,796 + OHPLBJKB_01108 0.76 -1.0
1,131,797 - OHPLBJKB_01108 0.76 +0.6
1,131,850 + OHPLBJKB_01108 0.81 +1.3
1,131,851 - OHPLBJKB_01108 0.81 -1.7
1,131,851 - OHPLBJKB_01108 0.81 +0.5
1,131,861 + OHPLBJKB_01108 0.82 +0.1
1,131,861 + OHPLBJKB_01108 0.82 +0.4
1,131,861 + OHPLBJKB_01108 0.82 -1.3
1,131,861 + OHPLBJKB_01108 0.82 +0.7
1,131,861 + OHPLBJKB_01108 0.82 +2.6
1,131,862 - OHPLBJKB_01108 0.82 +0.8
1,131,862 - OHPLBJKB_01108 0.82 +0.8
1,131,864 + OHPLBJKB_01108 0.82 -1.9
1,131,864 + OHPLBJKB_01108 0.82 -0.7
1,131,864 + OHPLBJKB_01108 0.82 -1.1
1,131,864 + OHPLBJKB_01108 0.82 +0.6
1,131,864 + OHPLBJKB_01108 0.82 +0.3
1,131,865 - OHPLBJKB_01108 0.82 -0.6
1,131,865 - OHPLBJKB_01108 0.82 +0.8
1,131,865 - OHPLBJKB_01108 0.82 +0.7
1,131,865 - OHPLBJKB_01108 0.82 +1.5
1,131,865 - OHPLBJKB_01108 0.82 -0.5
1,131,865 - OHPLBJKB_01108 0.82 -0.9
1,131,880 - OHPLBJKB_01108 0.83 +0.2
1,131,880 - OHPLBJKB_01108 0.83 +0.1
1,131,891 - OHPLBJKB_01108 0.84 -3.2
1,131,901 + OHPLBJKB_01108 0.85 -0.3
1,131,904 + OHPLBJKB_01108 0.86 -0.5
1,131,904 + OHPLBJKB_01108 0.86 +0.2
1,131,904 + OHPLBJKB_01108 0.86 -2.0
1,131,904 + OHPLBJKB_01108 0.86 -2.0
1,131,904 + OHPLBJKB_01108 0.86 -0.4
1,131,904 + OHPLBJKB_01108 0.86 +0.0
1,131,905 - OHPLBJKB_01108 0.86 +1.4
1,131,905 - OHPLBJKB_01108 0.86 -1.1
1,131,905 - OHPLBJKB_01108 0.86 -0.3
1,131,905 - OHPLBJKB_01108 0.86 -0.1
1,131,905 - OHPLBJKB_01108 0.86 +1.2
1,131,906 + OHPLBJKB_01108 0.86 -1.3
1,131,906 + OHPLBJKB_01108 0.86 +0.6
1,131,907 - OHPLBJKB_01108 0.86 -0.1
1,132,035 - +0.1
1,132,063 + +0.8
1,132,064 - -1.3
1,132,064 - -1.0
1,132,067 - +0.6
1,132,129 + +2.7
1,132,129 + -0.3
1,132,129 + +0.7
1,132,130 - +0.5
1,132,130 - -0.3
1,132,157 - -0.2
1,132,241 + OHPLBJKB_01109 0.11 +1.8
1,132,241 + OHPLBJKB_01109 0.11 -0.0
1,132,241 + OHPLBJKB_01109 0.11 +1.4
1,132,241 + OHPLBJKB_01109 0.11 +1.3
1,132,264 - OHPLBJKB_01109 0.13 -1.1
1,132,296 + OHPLBJKB_01109 0.16 -1.5
1,132,297 - OHPLBJKB_01109 0.16 -0.2
1,132,297 - OHPLBJKB_01109 0.16 -1.9
1,132,404 + OHPLBJKB_01109 0.25 -0.1
1,132,475 - OHPLBJKB_01109 0.32 -0.3
1,132,475 - OHPLBJKB_01109 0.32 -0.1
1,132,488 - OHPLBJKB_01109 0.33 -0.4
1,132,488 - OHPLBJKB_01109 0.33 +0.2
1,132,569 + OHPLBJKB_01109 0.40 -0.5
1,132,569 + OHPLBJKB_01109 0.40 -1.6
1,132,569 + OHPLBJKB_01109 0.40 -1.1
1,132,569 + OHPLBJKB_01109 0.40 +0.8
1,132,578 + OHPLBJKB_01109 0.40 -0.2
1,132,580 + OHPLBJKB_01109 0.41 -0.9
1,132,581 - OHPLBJKB_01109 0.41 -0.6
1,132,649 + OHPLBJKB_01109 0.47 +0.6
1,132,656 + OHPLBJKB_01109 0.47 +1.4
1,132,670 - OHPLBJKB_01109 0.48 +0.3
1,132,707 + OHPLBJKB_01109 0.52 +0.1
1,132,708 - OHPLBJKB_01109 0.52 -2.4
1,132,743 + OHPLBJKB_01109 0.55 +1.1
1,132,744 - OHPLBJKB_01109 0.55 -0.0
1,132,744 - OHPLBJKB_01109 0.55 -0.1
1,132,760 + OHPLBJKB_01109 0.56 -0.2
1,132,760 + OHPLBJKB_01109 0.56 +0.3
1,132,771 + OHPLBJKB_01109 0.57 +0.6
1,132,772 - OHPLBJKB_01109 0.57 -1.5
1,132,789 - OHPLBJKB_01109 0.59 -0.5
1,132,802 - OHPLBJKB_01109 0.60 +0.5
1,132,802 - OHPLBJKB_01109 0.60 -1.4
1,132,802 - OHPLBJKB_01109 0.60 +0.1
1,132,839 + OHPLBJKB_01109 0.63 -0.2
1,132,839 + OHPLBJKB_01109 0.63 -0.2
1,132,902 - OHPLBJKB_01109 0.68 -1.0
1,133,011 + OHPLBJKB_01109 0.78 -1.0
1,133,012 - OHPLBJKB_01109 0.78 -0.8
1,133,050 - OHPLBJKB_01109 0.81 +0.6
1,133,054 + OHPLBJKB_01109 0.81 -0.8
1,133,054 + OHPLBJKB_01109 0.81 +2.0
1,133,055 - OHPLBJKB_01109 0.82 +0.1
1,133,055 - OHPLBJKB_01109 0.82 +0.7
1,133,088 + OHPLBJKB_01109 0.84 +1.1
1,133,089 - OHPLBJKB_01109 0.84 -0.1
1,133,124 + OHPLBJKB_01109 0.88 -0.5
1,133,125 - OHPLBJKB_01109 0.88 +1.5
1,133,198 - +0.7
1,133,207 - +0.6
1,133,268 + +1.3
1,133,269 - -0.8
1,133,319 + -0.1
1,133,402 + +1.1
1,133,402 + -0.6
1,133,425 + +0.3
1,133,425 + +0.8
1,133,435 + -0.5
1,133,439 - +0.6
1,133,508 + +0.3
1,133,508 + -0.2
1,133,509 - +0.5
1,133,510 + -1.6
1,133,510 + +0.7
1,133,519 - -2.0
1,133,601 - OHPLBJKB_01110 0.25 -1.1
1,133,647 + OHPLBJKB_01110 0.38 +0.1
1,133,648 - OHPLBJKB_01110 0.38 +0.3
1,133,648 - OHPLBJKB_01110 0.38 +1.1
1,133,648 - OHPLBJKB_01110 0.38 -1.5
1,133,651 + OHPLBJKB_01110 0.39 +0.3
1,133,651 + OHPLBJKB_01110 0.39 +0.9
1,133,651 + OHPLBJKB_01110 0.39 +1.1
1,133,651 + OHPLBJKB_01110 0.39 +1.1
1,133,651 + OHPLBJKB_01110 0.39 -0.2
1,133,652 - OHPLBJKB_01110 0.39 +1.3
1,133,652 - OHPLBJKB_01110 0.39 -0.2
1,133,652 - OHPLBJKB_01110 0.39 -1.4
1,133,652 - OHPLBJKB_01110 0.39 -0.6
1,133,652 - OHPLBJKB_01110 0.39 -0.4
1,133,688 - OHPLBJKB_01110 0.50 -0.3
1,133,693 + OHPLBJKB_01110 0.51 -1.1
1,133,694 - OHPLBJKB_01110 0.52 +0.8
1,133,694 - OHPLBJKB_01110 0.52 +0.7
1,133,694 - OHPLBJKB_01110 0.52 -0.1
1,133,745 - OHPLBJKB_01110 0.67 -0.1
1,133,745 - OHPLBJKB_01110 0.67 -0.8
1,133,745 - OHPLBJKB_01110 0.67 +1.1
1,133,754 - OHPLBJKB_01110 0.69 +0.1
1,133,843 + -1.1
1,133,844 - +0.2
1,133,858 + -2.5
1,133,858 + +1.1
1,133,899 + +1.8
1,133,900 - -1.0
1,134,012 - -0.2
1,134,028 + -0.2
1,134,028 + -0.2
1,134,029 - +0.9
1,134,130 + +1.4
1,134,130 + +1.1
1,134,131 - -0.5
1,134,134 + +1.0
1,134,134 + +0.3
1,134,134 + +1.6
1,134,134 + +0.9
1,134,134 + -0.0
1,134,134 + +0.3
1,134,134 + +0.3
1,134,134 + -1.1
1,134,135 - +1.1
1,134,135 - +0.0
1,134,135 - -0.3
1,134,135 - +0.8
1,134,135 - -0.5

Or see this region's nucleotide sequence