Experiment: No phage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_01094 and OHPLBJKB_01095 are separated by 65 nucleotides OHPLBJKB_01095 and OHPLBJKB_01096 are separated by 91 nucleotides
OHPLBJKB_01094: OHPLBJKB_01094 - hypothetical protein, at 1,120,289 to 1,121,530
_01094
OHPLBJKB_01095: OHPLBJKB_01095 - Inner membrane protein YpjD, at 1,121,596 to 1,122,462
_01095
OHPLBJKB_01096: OHPLBJKB_01096 - Signal recognition particle protein, at 1,122,554 to 1,123,915
_01096
Position (kb)
1121
1122
1123 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1120.615 kb on + strand, within OHPLBJKB_01094 at 1120.650 kb on + strand, within OHPLBJKB_01094 at 1120.737 kb on + strand, within OHPLBJKB_01094 at 1120.738 kb on - strand, within OHPLBJKB_01094 at 1120.814 kb on + strand, within OHPLBJKB_01094 at 1120.814 kb on + strand, within OHPLBJKB_01094 at 1120.815 kb on - strand, within OHPLBJKB_01094 at 1120.825 kb on + strand, within OHPLBJKB_01094 at 1120.825 kb on + strand, within OHPLBJKB_01094 at 1120.825 kb on + strand, within OHPLBJKB_01094 at 1120.934 kb on - strand, within OHPLBJKB_01094 at 1121.123 kb on - strand, within OHPLBJKB_01094 at 1121.132 kb on - strand, within OHPLBJKB_01094 at 1121.192 kb on - strand, within OHPLBJKB_01094 at 1121.192 kb on - strand, within OHPLBJKB_01094 at 1121.200 kb on - strand, within OHPLBJKB_01094 at 1121.243 kb on + strand, within OHPLBJKB_01094 at 1121.243 kb on + strand, within OHPLBJKB_01094 at 1121.244 kb on - strand, within OHPLBJKB_01094 at 1121.244 kb on - strand, within OHPLBJKB_01094 at 1121.244 kb on - strand, within OHPLBJKB_01094 at 1121.256 kb on - strand, within OHPLBJKB_01094 at 1121.262 kb on - strand, within OHPLBJKB_01094 at 1121.329 kb on + strand, within OHPLBJKB_01094 at 1121.330 kb on - strand, within OHPLBJKB_01094 at 1121.365 kb on + strand, within OHPLBJKB_01094 at 1121.387 kb on + strand, within OHPLBJKB_01094 at 1121.455 kb on + strand at 1121.455 kb on + strand at 1121.456 kb on - strand at 1121.456 kb on - strand at 1121.456 kb on - strand at 1121.542 kb on + strand at 1121.542 kb on + strand at 1121.554 kb on + strand at 1121.554 kb on + strand at 1121.554 kb on + strand at 1121.554 kb on + strand at 1121.554 kb on + strand at 1121.554 kb on + strand at 1121.554 kb on + strand at 1121.555 kb on - strand at 1121.555 kb on - strand at 1121.555 kb on - strand at 1121.555 kb on - strand at 1121.555 kb on - strand at 1121.555 kb on - strand at 1121.555 kb on - strand at 1121.555 kb on - strand at 1121.555 kb on - strand at 1121.555 kb on - strand at 1121.557 kb on + strand at 1121.557 kb on + strand at 1121.558 kb on - strand at 1121.560 kb on + strand at 1121.598 kb on - strand at 1121.598 kb on - strand at 1121.605 kb on + strand at 1121.605 kb on + strand at 1121.605 kb on + strand at 1121.634 kb on - strand at 1121.634 kb on - strand at 1121.705 kb on + strand, within OHPLBJKB_01095 at 1121.705 kb on + strand, within OHPLBJKB_01095 at 1121.705 kb on + strand, within OHPLBJKB_01095 at 1121.727 kb on + strand, within OHPLBJKB_01095 at 1121.727 kb on + strand, within OHPLBJKB_01095 at 1121.728 kb on - strand, within OHPLBJKB_01095 at 1121.728 kb on - strand, within OHPLBJKB_01095 at 1121.728 kb on - strand, within OHPLBJKB_01095 at 1121.728 kb on - strand, within OHPLBJKB_01095 at 1121.729 kb on + strand, within OHPLBJKB_01095 at 1121.729 kb on + strand, within OHPLBJKB_01095 at 1121.729 kb on + strand, within OHPLBJKB_01095 at 1121.729 kb on + strand, within OHPLBJKB_01095 at 1121.729 kb on + strand, within OHPLBJKB_01095 at 1121.729 kb on + strand, within OHPLBJKB_01095 at 1121.730 kb on - strand, within OHPLBJKB_01095 at 1121.730 kb on - strand, within OHPLBJKB_01095 at 1121.730 kb on - strand, within OHPLBJKB_01095 at 1121.730 kb on - strand, within OHPLBJKB_01095 at 1121.730 kb on - strand, within OHPLBJKB_01095 at 1121.781 kb on + strand, within OHPLBJKB_01095 at 1121.781 kb on + strand, within OHPLBJKB_01095 at 1121.782 kb on - strand, within OHPLBJKB_01095 at 1121.782 kb on - strand, within OHPLBJKB_01095 at 1121.782 kb on - strand, within OHPLBJKB_01095 at 1121.782 kb on - strand, within OHPLBJKB_01095 at 1121.785 kb on + strand, within OHPLBJKB_01095 at 1121.785 kb on + strand, within OHPLBJKB_01095 at 1121.785 kb on + strand, within OHPLBJKB_01095 at 1121.785 kb on + strand, within OHPLBJKB_01095 at 1121.786 kb on - strand, within OHPLBJKB_01095 at 1121.786 kb on - strand, within OHPLBJKB_01095 at 1121.786 kb on - strand, within OHPLBJKB_01095 at 1121.798 kb on + strand, within OHPLBJKB_01095 at 1121.799 kb on - strand, within OHPLBJKB_01095 at 1121.865 kb on + strand, within OHPLBJKB_01095 at 1121.865 kb on + strand, within OHPLBJKB_01095 at 1121.866 kb on - strand, within OHPLBJKB_01095 at 1121.971 kb on - strand, within OHPLBJKB_01095 at 1121.984 kb on + strand, within OHPLBJKB_01095 at 1122.047 kb on + strand, within OHPLBJKB_01095 at 1122.047 kb on + strand, within OHPLBJKB_01095 at 1122.048 kb on - strand, within OHPLBJKB_01095 at 1122.048 kb on - strand, within OHPLBJKB_01095 at 1122.048 kb on - strand, within OHPLBJKB_01095 at 1122.048 kb on - strand, within OHPLBJKB_01095 at 1122.048 kb on - strand, within OHPLBJKB_01095 at 1122.048 kb on - strand, within OHPLBJKB_01095 at 1122.048 kb on - strand, within OHPLBJKB_01095 at 1122.098 kb on + strand, within OHPLBJKB_01095 at 1122.098 kb on + strand, within OHPLBJKB_01095 at 1122.098 kb on + strand, within OHPLBJKB_01095 at 1122.098 kb on + strand, within OHPLBJKB_01095 at 1122.099 kb on - strand, within OHPLBJKB_01095 at 1122.282 kb on + strand, within OHPLBJKB_01095 at 1122.282 kb on + strand, within OHPLBJKB_01095 at 1122.387 kb on + strand at 1122.388 kb on - strand at 1122.388 kb on - strand at 1122.388 kb on - strand at 1122.411 kb on + strand at 1122.412 kb on - strand at 1122.427 kb on + strand at 1122.428 kb on - strand at 1122.428 kb on - strand at 1122.428 kb on - strand at 1122.429 kb on + strand at 1122.430 kb on - strand at 1122.430 kb on - strand at 1122.430 kb on - strand at 1122.463 kb on - strand at 1122.485 kb on + strand at 1122.485 kb on + strand at 1122.485 kb on + strand at 1122.487 kb on + strand at 1122.500 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction No phage remove 1,120,615 + OHPLBJKB_01094 0.26 -0.7 1,120,650 + OHPLBJKB_01094 0.29 +1.1 1,120,737 + OHPLBJKB_01094 0.36 +1.0 1,120,738 - OHPLBJKB_01094 0.36 -0.4 1,120,814 + OHPLBJKB_01094 0.42 +1.9 1,120,814 + OHPLBJKB_01094 0.42 -1.0 1,120,815 - OHPLBJKB_01094 0.42 -0.7 1,120,825 + OHPLBJKB_01094 0.43 -2.9 1,120,825 + OHPLBJKB_01094 0.43 -0.5 1,120,825 + OHPLBJKB_01094 0.43 +0.1 1,120,934 - OHPLBJKB_01094 0.52 +0.3 1,121,123 - OHPLBJKB_01094 0.67 -0.7 1,121,132 - OHPLBJKB_01094 0.68 -0.8 1,121,192 - OHPLBJKB_01094 0.73 -0.1 1,121,192 - OHPLBJKB_01094 0.73 +0.4 1,121,200 - OHPLBJKB_01094 0.73 -0.2 1,121,243 + OHPLBJKB_01094 0.77 -0.6 1,121,243 + OHPLBJKB_01094 0.77 -0.9 1,121,244 - OHPLBJKB_01094 0.77 -0.6 1,121,244 - OHPLBJKB_01094 0.77 +0.5 1,121,244 - OHPLBJKB_01094 0.77 -3.3 1,121,256 - OHPLBJKB_01094 0.78 -0.3 1,121,262 - OHPLBJKB_01094 0.78 +1.1 1,121,329 + OHPLBJKB_01094 0.84 -0.6 1,121,330 - OHPLBJKB_01094 0.84 -0.7 1,121,365 + OHPLBJKB_01094 0.87 +0.7 1,121,387 + OHPLBJKB_01094 0.88 +1.0 1,121,455 + -0.3 1,121,455 + +0.4 1,121,456 - -0.1 1,121,456 - -0.5 1,121,456 - -1.6 1,121,542 + -0.7 1,121,542 + -1.9 1,121,554 + +1.3 1,121,554 + -0.5 1,121,554 + -0.9 1,121,554 + -2.0 1,121,554 + -0.1 1,121,554 + +0.3 1,121,554 + +0.4 1,121,555 - -1.8 1,121,555 - -3.6 1,121,555 - -0.6 1,121,555 - -1.2 1,121,555 - -2.1 1,121,555 - +0.3 1,121,555 - -0.6 1,121,555 - -0.7 1,121,555 - -1.1 1,121,555 - +1.5 1,121,557 + +0.4 1,121,557 + -1.2 1,121,558 - +1.1 1,121,560 + -1.1 1,121,598 - +1.0 1,121,598 - -2.2 1,121,605 + -0.3 1,121,605 + -0.7 1,121,605 + -2.2 1,121,634 - -0.7 1,121,634 - -3.2 1,121,705 + OHPLBJKB_01095 0.13 -0.1 1,121,705 + OHPLBJKB_01095 0.13 -1.0 1,121,705 + OHPLBJKB_01095 0.13 -0.4 1,121,727 + OHPLBJKB_01095 0.15 -1.1 1,121,727 + OHPLBJKB_01095 0.15 +1.9 1,121,728 - OHPLBJKB_01095 0.15 -0.0 1,121,728 - OHPLBJKB_01095 0.15 -0.3 1,121,728 - OHPLBJKB_01095 0.15 +1.2 1,121,728 - OHPLBJKB_01095 0.15 -1.5 1,121,729 + OHPLBJKB_01095 0.15 +0.3 1,121,729 + OHPLBJKB_01095 0.15 +0.5 1,121,729 + OHPLBJKB_01095 0.15 +0.8 1,121,729 + OHPLBJKB_01095 0.15 +0.6 1,121,729 + OHPLBJKB_01095 0.15 -2.2 1,121,729 + OHPLBJKB_01095 0.15 -1.7 1,121,730 - OHPLBJKB_01095 0.15 -0.6 1,121,730 - OHPLBJKB_01095 0.15 -1.7 1,121,730 - OHPLBJKB_01095 0.15 +0.6 1,121,730 - OHPLBJKB_01095 0.15 +0.2 1,121,730 - OHPLBJKB_01095 0.15 -1.3 1,121,781 + OHPLBJKB_01095 0.21 -0.9 1,121,781 + OHPLBJKB_01095 0.21 -0.4 1,121,782 - OHPLBJKB_01095 0.21 +3.9 1,121,782 - OHPLBJKB_01095 0.21 +0.2 1,121,782 - OHPLBJKB_01095 0.21 +0.1 1,121,782 - OHPLBJKB_01095 0.21 +0.5 1,121,785 + OHPLBJKB_01095 0.22 +0.5 1,121,785 + OHPLBJKB_01095 0.22 +1.5 1,121,785 + OHPLBJKB_01095 0.22 -0.7 1,121,785 + OHPLBJKB_01095 0.22 +1.5 1,121,786 - OHPLBJKB_01095 0.22 +0.2 1,121,786 - OHPLBJKB_01095 0.22 -0.7 1,121,786 - OHPLBJKB_01095 0.22 -0.7 1,121,798 + OHPLBJKB_01095 0.23 +0.5 1,121,799 - OHPLBJKB_01095 0.23 +0.1 1,121,865 + OHPLBJKB_01095 0.31 -0.4 1,121,865 + OHPLBJKB_01095 0.31 +1.2 1,121,866 - OHPLBJKB_01095 0.31 -1.7 1,121,971 - OHPLBJKB_01095 0.43 -1.3 1,121,984 + OHPLBJKB_01095 0.45 +0.5 1,122,047 + OHPLBJKB_01095 0.52 -1.4 1,122,047 + OHPLBJKB_01095 0.52 -1.0 1,122,048 - OHPLBJKB_01095 0.52 +0.9 1,122,048 - OHPLBJKB_01095 0.52 +0.1 1,122,048 - OHPLBJKB_01095 0.52 +0.7 1,122,048 - OHPLBJKB_01095 0.52 -1.9 1,122,048 - OHPLBJKB_01095 0.52 -0.3 1,122,048 - OHPLBJKB_01095 0.52 +1.7 1,122,048 - OHPLBJKB_01095 0.52 +0.8 1,122,098 + OHPLBJKB_01095 0.58 +0.7 1,122,098 + OHPLBJKB_01095 0.58 +0.5 1,122,098 + OHPLBJKB_01095 0.58 -0.9 1,122,098 + OHPLBJKB_01095 0.58 +0.1 1,122,099 - OHPLBJKB_01095 0.58 +0.5 1,122,282 + OHPLBJKB_01095 0.79 +0.0 1,122,282 + OHPLBJKB_01095 0.79 -0.3 1,122,387 + -0.2 1,122,388 - +1.1 1,122,388 - +0.5 1,122,388 - +0.6 1,122,411 + +1.1 1,122,412 - +1.1 1,122,427 + +0.3 1,122,428 - +0.3 1,122,428 - +0.5 1,122,428 - -0.2 1,122,429 + +0.6 1,122,430 - +0.4 1,122,430 - +0.6 1,122,430 - -0.1 1,122,463 - -0.0 1,122,485 + -0.0 1,122,485 + +0.5 1,122,485 + -1.5 1,122,487 + -1.1 1,122,500 + +1.1
Or see this region's nucleotide sequence