Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01095

Experiment: No phage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01094 and OHPLBJKB_01095 are separated by 65 nucleotidesOHPLBJKB_01095 and OHPLBJKB_01096 are separated by 91 nucleotides OHPLBJKB_01094: OHPLBJKB_01094 - hypothetical protein, at 1,120,289 to 1,121,530 _01094 OHPLBJKB_01095: OHPLBJKB_01095 - Inner membrane protein YpjD, at 1,121,596 to 1,122,462 _01095 OHPLBJKB_01096: OHPLBJKB_01096 - Signal recognition particle protein, at 1,122,554 to 1,123,915 _01096 Position (kb) 1121 1122 1123Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1120.615 kb on + strand, within OHPLBJKB_01094at 1120.650 kb on + strand, within OHPLBJKB_01094at 1120.737 kb on + strand, within OHPLBJKB_01094at 1120.738 kb on - strand, within OHPLBJKB_01094at 1120.814 kb on + strand, within OHPLBJKB_01094at 1120.814 kb on + strand, within OHPLBJKB_01094at 1120.815 kb on - strand, within OHPLBJKB_01094at 1120.825 kb on + strand, within OHPLBJKB_01094at 1120.825 kb on + strand, within OHPLBJKB_01094at 1120.825 kb on + strand, within OHPLBJKB_01094at 1120.934 kb on - strand, within OHPLBJKB_01094at 1121.123 kb on - strand, within OHPLBJKB_01094at 1121.132 kb on - strand, within OHPLBJKB_01094at 1121.192 kb on - strand, within OHPLBJKB_01094at 1121.192 kb on - strand, within OHPLBJKB_01094at 1121.200 kb on - strand, within OHPLBJKB_01094at 1121.243 kb on + strand, within OHPLBJKB_01094at 1121.243 kb on + strand, within OHPLBJKB_01094at 1121.244 kb on - strand, within OHPLBJKB_01094at 1121.244 kb on - strand, within OHPLBJKB_01094at 1121.244 kb on - strand, within OHPLBJKB_01094at 1121.256 kb on - strand, within OHPLBJKB_01094at 1121.262 kb on - strand, within OHPLBJKB_01094at 1121.329 kb on + strand, within OHPLBJKB_01094at 1121.330 kb on - strand, within OHPLBJKB_01094at 1121.365 kb on + strand, within OHPLBJKB_01094at 1121.387 kb on + strand, within OHPLBJKB_01094at 1121.455 kb on + strandat 1121.455 kb on + strandat 1121.456 kb on - strandat 1121.456 kb on - strandat 1121.456 kb on - strandat 1121.542 kb on + strandat 1121.542 kb on + strandat 1121.554 kb on + strandat 1121.554 kb on + strandat 1121.554 kb on + strandat 1121.554 kb on + strandat 1121.554 kb on + strandat 1121.554 kb on + strandat 1121.554 kb on + strandat 1121.555 kb on - strandat 1121.555 kb on - strandat 1121.555 kb on - strandat 1121.555 kb on - strandat 1121.555 kb on - strandat 1121.555 kb on - strandat 1121.555 kb on - strandat 1121.555 kb on - strandat 1121.555 kb on - strandat 1121.555 kb on - strandat 1121.557 kb on + strandat 1121.557 kb on + strandat 1121.558 kb on - strandat 1121.560 kb on + strandat 1121.598 kb on - strandat 1121.598 kb on - strandat 1121.605 kb on + strandat 1121.605 kb on + strandat 1121.605 kb on + strandat 1121.634 kb on - strandat 1121.634 kb on - strandat 1121.705 kb on + strand, within OHPLBJKB_01095at 1121.705 kb on + strand, within OHPLBJKB_01095at 1121.705 kb on + strand, within OHPLBJKB_01095at 1121.727 kb on + strand, within OHPLBJKB_01095at 1121.727 kb on + strand, within OHPLBJKB_01095at 1121.728 kb on - strand, within OHPLBJKB_01095at 1121.728 kb on - strand, within OHPLBJKB_01095at 1121.728 kb on - strand, within OHPLBJKB_01095at 1121.728 kb on - strand, within OHPLBJKB_01095at 1121.729 kb on + strand, within OHPLBJKB_01095at 1121.729 kb on + strand, within OHPLBJKB_01095at 1121.729 kb on + strand, within OHPLBJKB_01095at 1121.729 kb on + strand, within OHPLBJKB_01095at 1121.729 kb on + strand, within OHPLBJKB_01095at 1121.729 kb on + strand, within OHPLBJKB_01095at 1121.730 kb on - strand, within OHPLBJKB_01095at 1121.730 kb on - strand, within OHPLBJKB_01095at 1121.730 kb on - strand, within OHPLBJKB_01095at 1121.730 kb on - strand, within OHPLBJKB_01095at 1121.730 kb on - strand, within OHPLBJKB_01095at 1121.781 kb on + strand, within OHPLBJKB_01095at 1121.781 kb on + strand, within OHPLBJKB_01095at 1121.782 kb on - strand, within OHPLBJKB_01095at 1121.782 kb on - strand, within OHPLBJKB_01095at 1121.782 kb on - strand, within OHPLBJKB_01095at 1121.782 kb on - strand, within OHPLBJKB_01095at 1121.785 kb on + strand, within OHPLBJKB_01095at 1121.785 kb on + strand, within OHPLBJKB_01095at 1121.785 kb on + strand, within OHPLBJKB_01095at 1121.785 kb on + strand, within OHPLBJKB_01095at 1121.786 kb on - strand, within OHPLBJKB_01095at 1121.786 kb on - strand, within OHPLBJKB_01095at 1121.786 kb on - strand, within OHPLBJKB_01095at 1121.798 kb on + strand, within OHPLBJKB_01095at 1121.799 kb on - strand, within OHPLBJKB_01095at 1121.865 kb on + strand, within OHPLBJKB_01095at 1121.865 kb on + strand, within OHPLBJKB_01095at 1121.866 kb on - strand, within OHPLBJKB_01095at 1121.971 kb on - strand, within OHPLBJKB_01095at 1121.984 kb on + strand, within OHPLBJKB_01095at 1122.047 kb on + strand, within OHPLBJKB_01095at 1122.047 kb on + strand, within OHPLBJKB_01095at 1122.048 kb on - strand, within OHPLBJKB_01095at 1122.048 kb on - strand, within OHPLBJKB_01095at 1122.048 kb on - strand, within OHPLBJKB_01095at 1122.048 kb on - strand, within OHPLBJKB_01095at 1122.048 kb on - strand, within OHPLBJKB_01095at 1122.048 kb on - strand, within OHPLBJKB_01095at 1122.048 kb on - strand, within OHPLBJKB_01095at 1122.098 kb on + strand, within OHPLBJKB_01095at 1122.098 kb on + strand, within OHPLBJKB_01095at 1122.098 kb on + strand, within OHPLBJKB_01095at 1122.098 kb on + strand, within OHPLBJKB_01095at 1122.099 kb on - strand, within OHPLBJKB_01095at 1122.282 kb on + strand, within OHPLBJKB_01095at 1122.282 kb on + strand, within OHPLBJKB_01095at 1122.387 kb on + strandat 1122.388 kb on - strandat 1122.388 kb on - strandat 1122.388 kb on - strandat 1122.411 kb on + strandat 1122.412 kb on - strandat 1122.427 kb on + strandat 1122.428 kb on - strandat 1122.428 kb on - strandat 1122.428 kb on - strandat 1122.429 kb on + strandat 1122.430 kb on - strandat 1122.430 kb on - strandat 1122.430 kb on - strandat 1122.463 kb on - strandat 1122.485 kb on + strandat 1122.485 kb on + strandat 1122.485 kb on + strandat 1122.487 kb on + strandat 1122.500 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage
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1,120,615 + OHPLBJKB_01094 0.26 -0.7
1,120,650 + OHPLBJKB_01094 0.29 +1.1
1,120,737 + OHPLBJKB_01094 0.36 +1.0
1,120,738 - OHPLBJKB_01094 0.36 -0.4
1,120,814 + OHPLBJKB_01094 0.42 +1.9
1,120,814 + OHPLBJKB_01094 0.42 -1.0
1,120,815 - OHPLBJKB_01094 0.42 -0.7
1,120,825 + OHPLBJKB_01094 0.43 -2.9
1,120,825 + OHPLBJKB_01094 0.43 -0.5
1,120,825 + OHPLBJKB_01094 0.43 +0.1
1,120,934 - OHPLBJKB_01094 0.52 +0.3
1,121,123 - OHPLBJKB_01094 0.67 -0.7
1,121,132 - OHPLBJKB_01094 0.68 -0.8
1,121,192 - OHPLBJKB_01094 0.73 -0.1
1,121,192 - OHPLBJKB_01094 0.73 +0.4
1,121,200 - OHPLBJKB_01094 0.73 -0.2
1,121,243 + OHPLBJKB_01094 0.77 -0.6
1,121,243 + OHPLBJKB_01094 0.77 -0.9
1,121,244 - OHPLBJKB_01094 0.77 -0.6
1,121,244 - OHPLBJKB_01094 0.77 +0.5
1,121,244 - OHPLBJKB_01094 0.77 -3.3
1,121,256 - OHPLBJKB_01094 0.78 -0.3
1,121,262 - OHPLBJKB_01094 0.78 +1.1
1,121,329 + OHPLBJKB_01094 0.84 -0.6
1,121,330 - OHPLBJKB_01094 0.84 -0.7
1,121,365 + OHPLBJKB_01094 0.87 +0.7
1,121,387 + OHPLBJKB_01094 0.88 +1.0
1,121,455 + -0.3
1,121,455 + +0.4
1,121,456 - -0.1
1,121,456 - -0.5
1,121,456 - -1.6
1,121,542 + -0.7
1,121,542 + -1.9
1,121,554 + +1.3
1,121,554 + -0.5
1,121,554 + -0.9
1,121,554 + -2.0
1,121,554 + -0.1
1,121,554 + +0.3
1,121,554 + +0.4
1,121,555 - -1.8
1,121,555 - -3.6
1,121,555 - -0.6
1,121,555 - -1.2
1,121,555 - -2.1
1,121,555 - +0.3
1,121,555 - -0.6
1,121,555 - -0.7
1,121,555 - -1.1
1,121,555 - +1.5
1,121,557 + +0.4
1,121,557 + -1.2
1,121,558 - +1.1
1,121,560 + -1.1
1,121,598 - +1.0
1,121,598 - -2.2
1,121,605 + -0.3
1,121,605 + -0.7
1,121,605 + -2.2
1,121,634 - -0.7
1,121,634 - -3.2
1,121,705 + OHPLBJKB_01095 0.13 -0.1
1,121,705 + OHPLBJKB_01095 0.13 -1.0
1,121,705 + OHPLBJKB_01095 0.13 -0.4
1,121,727 + OHPLBJKB_01095 0.15 -1.1
1,121,727 + OHPLBJKB_01095 0.15 +1.9
1,121,728 - OHPLBJKB_01095 0.15 -0.0
1,121,728 - OHPLBJKB_01095 0.15 -0.3
1,121,728 - OHPLBJKB_01095 0.15 +1.2
1,121,728 - OHPLBJKB_01095 0.15 -1.5
1,121,729 + OHPLBJKB_01095 0.15 +0.3
1,121,729 + OHPLBJKB_01095 0.15 +0.5
1,121,729 + OHPLBJKB_01095 0.15 +0.8
1,121,729 + OHPLBJKB_01095 0.15 +0.6
1,121,729 + OHPLBJKB_01095 0.15 -2.2
1,121,729 + OHPLBJKB_01095 0.15 -1.7
1,121,730 - OHPLBJKB_01095 0.15 -0.6
1,121,730 - OHPLBJKB_01095 0.15 -1.7
1,121,730 - OHPLBJKB_01095 0.15 +0.6
1,121,730 - OHPLBJKB_01095 0.15 +0.2
1,121,730 - OHPLBJKB_01095 0.15 -1.3
1,121,781 + OHPLBJKB_01095 0.21 -0.9
1,121,781 + OHPLBJKB_01095 0.21 -0.4
1,121,782 - OHPLBJKB_01095 0.21 +3.9
1,121,782 - OHPLBJKB_01095 0.21 +0.2
1,121,782 - OHPLBJKB_01095 0.21 +0.1
1,121,782 - OHPLBJKB_01095 0.21 +0.5
1,121,785 + OHPLBJKB_01095 0.22 +0.5
1,121,785 + OHPLBJKB_01095 0.22 +1.5
1,121,785 + OHPLBJKB_01095 0.22 -0.7
1,121,785 + OHPLBJKB_01095 0.22 +1.5
1,121,786 - OHPLBJKB_01095 0.22 +0.2
1,121,786 - OHPLBJKB_01095 0.22 -0.7
1,121,786 - OHPLBJKB_01095 0.22 -0.7
1,121,798 + OHPLBJKB_01095 0.23 +0.5
1,121,799 - OHPLBJKB_01095 0.23 +0.1
1,121,865 + OHPLBJKB_01095 0.31 -0.4
1,121,865 + OHPLBJKB_01095 0.31 +1.2
1,121,866 - OHPLBJKB_01095 0.31 -1.7
1,121,971 - OHPLBJKB_01095 0.43 -1.3
1,121,984 + OHPLBJKB_01095 0.45 +0.5
1,122,047 + OHPLBJKB_01095 0.52 -1.4
1,122,047 + OHPLBJKB_01095 0.52 -1.0
1,122,048 - OHPLBJKB_01095 0.52 +0.9
1,122,048 - OHPLBJKB_01095 0.52 +0.1
1,122,048 - OHPLBJKB_01095 0.52 +0.7
1,122,048 - OHPLBJKB_01095 0.52 -1.9
1,122,048 - OHPLBJKB_01095 0.52 -0.3
1,122,048 - OHPLBJKB_01095 0.52 +1.7
1,122,048 - OHPLBJKB_01095 0.52 +0.8
1,122,098 + OHPLBJKB_01095 0.58 +0.7
1,122,098 + OHPLBJKB_01095 0.58 +0.5
1,122,098 + OHPLBJKB_01095 0.58 -0.9
1,122,098 + OHPLBJKB_01095 0.58 +0.1
1,122,099 - OHPLBJKB_01095 0.58 +0.5
1,122,282 + OHPLBJKB_01095 0.79 +0.0
1,122,282 + OHPLBJKB_01095 0.79 -0.3
1,122,387 + -0.2
1,122,388 - +1.1
1,122,388 - +0.5
1,122,388 - +0.6
1,122,411 + +1.1
1,122,412 - +1.1
1,122,427 + +0.3
1,122,428 - +0.3
1,122,428 - +0.5
1,122,428 - -0.2
1,122,429 + +0.6
1,122,430 - +0.4
1,122,430 - +0.6
1,122,430 - -0.1
1,122,463 - -0.0
1,122,485 + -0.0
1,122,485 + +0.5
1,122,485 + -1.5
1,122,487 + -1.1
1,122,500 + +1.1

Or see this region's nucleotide sequence