Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00677

Experiment: No phage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00676 and OHPLBJKB_00677 overlap by 4 nucleotidesOHPLBJKB_00677 and OHPLBJKB_00678 are separated by 151 nucleotidesOHPLBJKB_00678 and OHPLBJKB_00679 are separated by 52 nucleotides OHPLBJKB_00676: OHPLBJKB_00676 - Sensor protein QseC, at 694,237 to 695,586 _00676 OHPLBJKB_00677: OHPLBJKB_00677 - Transcriptional regulatory protein QseB, at 695,583 to 696,242 _00677 OHPLBJKB_00678: OHPLBJKB_00678 - Protein YgiW, at 696,394 to 696,786 _00678 OHPLBJKB_00679: OHPLBJKB_00679 - DNA gyrase inhibitor, at 696,839 to 697,321 _00679 Position (kb) 695 696 697Strain fitness (log2 ratio) -3 -2 -1 0 1at 694.614 kb on - strand, within OHPLBJKB_00676at 694.614 kb on - strand, within OHPLBJKB_00676at 694.614 kb on - strand, within OHPLBJKB_00676at 694.614 kb on - strand, within OHPLBJKB_00676at 694.617 kb on + strand, within OHPLBJKB_00676at 694.617 kb on + strand, within OHPLBJKB_00676at 694.617 kb on + strand, within OHPLBJKB_00676at 694.618 kb on - strand, within OHPLBJKB_00676at 694.750 kb on + strand, within OHPLBJKB_00676at 694.751 kb on - strand, within OHPLBJKB_00676at 694.751 kb on - strand, within OHPLBJKB_00676at 694.751 kb on - strand, within OHPLBJKB_00676at 694.751 kb on - strand, within OHPLBJKB_00676at 694.751 kb on - strand, within OHPLBJKB_00676at 694.839 kb on + strand, within OHPLBJKB_00676at 694.866 kb on + strand, within OHPLBJKB_00676at 694.919 kb on - strand, within OHPLBJKB_00676at 694.995 kb on + strand, within OHPLBJKB_00676at 694.995 kb on + strand, within OHPLBJKB_00676at 694.995 kb on + strand, within OHPLBJKB_00676at 694.995 kb on + strand, within OHPLBJKB_00676at 694.995 kb on + strand, within OHPLBJKB_00676at 694.995 kb on + strand, within OHPLBJKB_00676at 694.996 kb on - strand, within OHPLBJKB_00676at 694.996 kb on - strand, within OHPLBJKB_00676at 694.996 kb on - strand, within OHPLBJKB_00676at 694.996 kb on - strand, within OHPLBJKB_00676at 694.999 kb on + strand, within OHPLBJKB_00676at 695.000 kb on - strand, within OHPLBJKB_00676at 695.000 kb on - strand, within OHPLBJKB_00676at 695.044 kb on + strand, within OHPLBJKB_00676at 695.045 kb on - strand, within OHPLBJKB_00676at 695.045 kb on - strand, within OHPLBJKB_00676at 695.048 kb on - strand, within OHPLBJKB_00676at 695.048 kb on - strand, within OHPLBJKB_00676at 695.048 kb on - strand, within OHPLBJKB_00676at 695.048 kb on - strand, within OHPLBJKB_00676at 695.062 kb on + strand, within OHPLBJKB_00676at 695.068 kb on - strand, within OHPLBJKB_00676at 695.068 kb on - strand, within OHPLBJKB_00676at 695.165 kb on + strand, within OHPLBJKB_00676at 695.252 kb on + strand, within OHPLBJKB_00676at 695.252 kb on + strand, within OHPLBJKB_00676at 695.253 kb on - strand, within OHPLBJKB_00676at 695.253 kb on - strand, within OHPLBJKB_00676at 695.253 kb on - strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.256 kb on + strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.257 kb on - strand, within OHPLBJKB_00676at 695.265 kb on + strand, within OHPLBJKB_00676at 695.266 kb on - strand, within OHPLBJKB_00676at 695.364 kb on + strand, within OHPLBJKB_00676at 695.364 kb on + strand, within OHPLBJKB_00676at 695.365 kb on - strand, within OHPLBJKB_00676at 695.365 kb on - strand, within OHPLBJKB_00676at 695.365 kb on - strand, within OHPLBJKB_00676at 695.419 kb on - strand, within OHPLBJKB_00676at 695.595 kb on + strandat 695.595 kb on + strandat 695.595 kb on + strandat 695.595 kb on + strandat 695.596 kb on - strandat 695.596 kb on - strandat 695.596 kb on - strandat 695.596 kb on - strandat 695.603 kb on - strandat 695.681 kb on + strand, within OHPLBJKB_00677at 695.705 kb on + strand, within OHPLBJKB_00677at 695.706 kb on - strand, within OHPLBJKB_00677at 695.707 kb on + strand, within OHPLBJKB_00677at 695.708 kb on - strand, within OHPLBJKB_00677at 695.708 kb on - strand, within OHPLBJKB_00677at 695.708 kb on - strand, within OHPLBJKB_00677at 695.708 kb on - strand, within OHPLBJKB_00677at 695.799 kb on + strand, within OHPLBJKB_00677at 695.925 kb on + strand, within OHPLBJKB_00677at 695.926 kb on - strand, within OHPLBJKB_00677at 695.943 kb on - strand, within OHPLBJKB_00677at 695.979 kb on + strand, within OHPLBJKB_00677at 695.979 kb on + strand, within OHPLBJKB_00677at 695.980 kb on - strand, within OHPLBJKB_00677at 695.980 kb on - strand, within OHPLBJKB_00677at 696.109 kb on + strand, within OHPLBJKB_00677at 696.110 kb on - strand, within OHPLBJKB_00677at 696.110 kb on - strand, within OHPLBJKB_00677at 696.110 kb on - strand, within OHPLBJKB_00677at 696.110 kb on - strand, within OHPLBJKB_00677at 696.120 kb on - strand, within OHPLBJKB_00677at 696.120 kb on - strand, within OHPLBJKB_00677at 696.121 kb on + strand, within OHPLBJKB_00677at 696.121 kb on + strand, within OHPLBJKB_00677at 696.121 kb on + strand, within OHPLBJKB_00677at 696.122 kb on - strand, within OHPLBJKB_00677at 696.122 kb on - strand, within OHPLBJKB_00677at 696.179 kb on + strandat 696.180 kb on - strandat 696.180 kb on - strandat 696.180 kb on - strandat 696.180 kb on - strandat 696.266 kb on - strandat 696.278 kb on + strandat 696.291 kb on - strandat 696.291 kb on - strandat 696.303 kb on - strandat 696.348 kb on + strandat 696.348 kb on + strandat 696.349 kb on - strandat 696.377 kb on + strandat 696.377 kb on + strandat 696.377 kb on + strandat 696.389 kb on + strandat 696.390 kb on - strandat 696.390 kb on - strandat 696.390 kb on - strandat 696.390 kb on - strandat 696.390 kb on - strandat 696.539 kb on + strand, within OHPLBJKB_00678at 696.539 kb on + strand, within OHPLBJKB_00678at 696.540 kb on - strand, within OHPLBJKB_00678at 696.540 kb on - strand, within OHPLBJKB_00678at 696.619 kb on + strand, within OHPLBJKB_00678at 696.619 kb on + strand, within OHPLBJKB_00678at 696.620 kb on - strand, within OHPLBJKB_00678at 696.620 kb on - strand, within OHPLBJKB_00678at 696.620 kb on - strand, within OHPLBJKB_00678at 696.620 kb on - strand, within OHPLBJKB_00678at 696.620 kb on - strand, within OHPLBJKB_00678at 696.645 kb on + strand, within OHPLBJKB_00678at 696.645 kb on + strand, within OHPLBJKB_00678at 696.776 kb on + strandat 696.791 kb on + strandat 696.861 kb on + strandat 696.861 kb on + strandat 696.861 kb on + strandat 696.861 kb on + strandat 696.862 kb on - strandat 696.862 kb on - strandat 696.862 kb on - strandat 696.886 kb on - strandat 696.932 kb on + strand, within OHPLBJKB_00679at 696.932 kb on + strand, within OHPLBJKB_00679at 696.932 kb on + strand, within OHPLBJKB_00679at 696.932 kb on + strand, within OHPLBJKB_00679at 696.932 kb on + strand, within OHPLBJKB_00679at 696.933 kb on - strand, within OHPLBJKB_00679at 696.933 kb on - strand, within OHPLBJKB_00679at 696.933 kb on - strand, within OHPLBJKB_00679at 697.133 kb on + strand, within OHPLBJKB_00679at 697.168 kb on + strand, within OHPLBJKB_00679at 697.231 kb on + strand, within OHPLBJKB_00679at 697.231 kb on + strand, within OHPLBJKB_00679

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage
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694,614 - OHPLBJKB_00676 0.28 -1.4
694,614 - OHPLBJKB_00676 0.28 -3.6
694,614 - OHPLBJKB_00676 0.28 -1.9
694,614 - OHPLBJKB_00676 0.28 -0.6
694,617 + OHPLBJKB_00676 0.28 -1.3
694,617 + OHPLBJKB_00676 0.28 -0.3
694,617 + OHPLBJKB_00676 0.28 -2.6
694,618 - OHPLBJKB_00676 0.28 -1.7
694,750 + OHPLBJKB_00676 0.38 +0.5
694,751 - OHPLBJKB_00676 0.38 -2.5
694,751 - OHPLBJKB_00676 0.38 -0.8
694,751 - OHPLBJKB_00676 0.38 -3.5
694,751 - OHPLBJKB_00676 0.38 -1.0
694,751 - OHPLBJKB_00676 0.38 -1.6
694,839 + OHPLBJKB_00676 0.45 -1.3
694,866 + OHPLBJKB_00676 0.47 -1.8
694,919 - OHPLBJKB_00676 0.51 +0.6
694,995 + OHPLBJKB_00676 0.56 +1.2
694,995 + OHPLBJKB_00676 0.56 -1.0
694,995 + OHPLBJKB_00676 0.56 -1.4
694,995 + OHPLBJKB_00676 0.56 +0.4
694,995 + OHPLBJKB_00676 0.56 +0.0
694,995 + OHPLBJKB_00676 0.56 -1.8
694,996 - OHPLBJKB_00676 0.56 -1.8
694,996 - OHPLBJKB_00676 0.56 -1.8
694,996 - OHPLBJKB_00676 0.56 -0.1
694,996 - OHPLBJKB_00676 0.56 +1.0
694,999 + OHPLBJKB_00676 0.56 -1.0
695,000 - OHPLBJKB_00676 0.57 -0.9
695,000 - OHPLBJKB_00676 0.57 -1.6
695,044 + OHPLBJKB_00676 0.60 -0.8
695,045 - OHPLBJKB_00676 0.60 -3.1
695,045 - OHPLBJKB_00676 0.60 -1.5
695,048 - OHPLBJKB_00676 0.60 -2.2
695,048 - OHPLBJKB_00676 0.60 -2.6
695,048 - OHPLBJKB_00676 0.60 -1.0
695,048 - OHPLBJKB_00676 0.60 -3.0
695,062 + OHPLBJKB_00676 0.61 +1.0
695,068 - OHPLBJKB_00676 0.62 -3.0
695,068 - OHPLBJKB_00676 0.62 -1.2
695,165 + OHPLBJKB_00676 0.69 +0.0
695,252 + OHPLBJKB_00676 0.75 +1.3
695,252 + OHPLBJKB_00676 0.75 -1.0
695,253 - OHPLBJKB_00676 0.75 +0.3
695,253 - OHPLBJKB_00676 0.75 -2.2
695,253 - OHPLBJKB_00676 0.75 -3.3
695,256 + OHPLBJKB_00676 0.75 +1.6
695,256 + OHPLBJKB_00676 0.75 -1.3
695,256 + OHPLBJKB_00676 0.75 +1.1
695,256 + OHPLBJKB_00676 0.75 -0.0
695,256 + OHPLBJKB_00676 0.75 -0.5
695,256 + OHPLBJKB_00676 0.75 -1.2
695,256 + OHPLBJKB_00676 0.75 -0.8
695,256 + OHPLBJKB_00676 0.75 -1.2
695,256 + OHPLBJKB_00676 0.75 -1.6
695,256 + OHPLBJKB_00676 0.75 -0.2
695,256 + OHPLBJKB_00676 0.75 -0.4
695,256 + OHPLBJKB_00676 0.75 +0.4
695,256 + OHPLBJKB_00676 0.75 -1.1
695,257 - OHPLBJKB_00676 0.76 -2.8
695,257 - OHPLBJKB_00676 0.76 -1.1
695,257 - OHPLBJKB_00676 0.76 -2.1
695,257 - OHPLBJKB_00676 0.76 -1.8
695,257 - OHPLBJKB_00676 0.76 -0.8
695,257 - OHPLBJKB_00676 0.76 -1.0
695,257 - OHPLBJKB_00676 0.76 -2.2
695,257 - OHPLBJKB_00676 0.76 -0.7
695,257 - OHPLBJKB_00676 0.76 -2.4
695,257 - OHPLBJKB_00676 0.76 -0.7
695,257 - OHPLBJKB_00676 0.76 -1.8
695,257 - OHPLBJKB_00676 0.76 -1.4
695,257 - OHPLBJKB_00676 0.76 -0.3
695,257 - OHPLBJKB_00676 0.76 +0.6
695,257 - OHPLBJKB_00676 0.76 -1.9
695,257 - OHPLBJKB_00676 0.76 -1.5
695,265 + OHPLBJKB_00676 0.76 -3.1
695,266 - OHPLBJKB_00676 0.76 +0.5
695,364 + OHPLBJKB_00676 0.83 -0.8
695,364 + OHPLBJKB_00676 0.83 +0.3
695,365 - OHPLBJKB_00676 0.84 -2.3
695,365 - OHPLBJKB_00676 0.84 -1.2
695,365 - OHPLBJKB_00676 0.84 -0.7
695,419 - OHPLBJKB_00676 0.88 +0.2
695,595 + -0.6
695,595 + -0.2
695,595 + -2.7
695,595 + -0.4
695,596 - +0.3
695,596 - +0.6
695,596 - -0.9
695,596 - +0.8
695,603 - -2.0
695,681 + OHPLBJKB_00677 0.15 -2.0
695,705 + OHPLBJKB_00677 0.18 +0.1
695,706 - OHPLBJKB_00677 0.19 -0.7
695,707 + OHPLBJKB_00677 0.19 +0.3
695,708 - OHPLBJKB_00677 0.19 +0.0
695,708 - OHPLBJKB_00677 0.19 -2.4
695,708 - OHPLBJKB_00677 0.19 +0.2
695,708 - OHPLBJKB_00677 0.19 -0.1
695,799 + OHPLBJKB_00677 0.33 +0.1
695,925 + OHPLBJKB_00677 0.52 -0.1
695,926 - OHPLBJKB_00677 0.52 -0.4
695,943 - OHPLBJKB_00677 0.55 +0.4
695,979 + OHPLBJKB_00677 0.60 -0.3
695,979 + OHPLBJKB_00677 0.60 -0.2
695,980 - OHPLBJKB_00677 0.60 +1.3
695,980 - OHPLBJKB_00677 0.60 -0.8
696,109 + OHPLBJKB_00677 0.80 -0.0
696,110 - OHPLBJKB_00677 0.80 -0.1
696,110 - OHPLBJKB_00677 0.80 -2.0
696,110 - OHPLBJKB_00677 0.80 +1.0
696,110 - OHPLBJKB_00677 0.80 -1.0
696,120 - OHPLBJKB_00677 0.81 -0.6
696,120 - OHPLBJKB_00677 0.81 -0.4
696,121 + OHPLBJKB_00677 0.82 -0.3
696,121 + OHPLBJKB_00677 0.82 -1.4
696,121 + OHPLBJKB_00677 0.82 -0.6
696,122 - OHPLBJKB_00677 0.82 -0.3
696,122 - OHPLBJKB_00677 0.82 -0.7
696,179 + -2.0
696,180 - +0.5
696,180 - +0.3
696,180 - -1.7
696,180 - -0.3
696,266 - -1.0
696,278 + +0.5
696,291 - +0.0
696,291 - +0.8
696,303 - -0.5
696,348 + -1.3
696,348 + +0.3
696,349 - -0.7
696,377 + -1.5
696,377 + +0.5
696,377 + +0.0
696,389 + -0.6
696,390 - +0.0
696,390 - -0.0
696,390 - -0.9
696,390 - -2.1
696,390 - -0.5
696,539 + OHPLBJKB_00678 0.37 +0.3
696,539 + OHPLBJKB_00678 0.37 +0.5
696,540 - OHPLBJKB_00678 0.37 +0.3
696,540 - OHPLBJKB_00678 0.37 -0.7
696,619 + OHPLBJKB_00678 0.57 +0.8
696,619 + OHPLBJKB_00678 0.57 -0.3
696,620 - OHPLBJKB_00678 0.58 -3.3
696,620 - OHPLBJKB_00678 0.58 +0.0
696,620 - OHPLBJKB_00678 0.58 +0.5
696,620 - OHPLBJKB_00678 0.58 +0.3
696,620 - OHPLBJKB_00678 0.58 -0.7
696,645 + OHPLBJKB_00678 0.64 -0.2
696,645 + OHPLBJKB_00678 0.64 +0.4
696,776 + +1.4
696,791 + +0.5
696,861 + +0.2
696,861 + +0.5
696,861 + -2.0
696,861 + -0.6
696,862 - +1.7
696,862 - +0.4
696,862 - -2.3
696,886 - -0.1
696,932 + OHPLBJKB_00679 0.19 -0.9
696,932 + OHPLBJKB_00679 0.19 +0.2
696,932 + OHPLBJKB_00679 0.19 -1.8
696,932 + OHPLBJKB_00679 0.19 -1.2
696,932 + OHPLBJKB_00679 0.19 -0.4
696,933 - OHPLBJKB_00679 0.19 +1.6
696,933 - OHPLBJKB_00679 0.19 -0.7
696,933 - OHPLBJKB_00679 0.19 -0.6
697,133 + OHPLBJKB_00679 0.61 +1.3
697,168 + OHPLBJKB_00679 0.68 -0.0
697,231 + OHPLBJKB_00679 0.81 -0.3
697,231 + OHPLBJKB_00679 0.81 -0.9

Or see this region's nucleotide sequence