Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00509

Experiment: No phage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00507 and OHPLBJKB_00508 are separated by 18 nucleotidesOHPLBJKB_00508 and OHPLBJKB_00509 overlap by 1 nucleotidesOHPLBJKB_00509 and OHPLBJKB_00510 are separated by 144 nucleotidesOHPLBJKB_00510 and OHPLBJKB_00511 are separated by 54 nucleotides OHPLBJKB_00507: OHPLBJKB_00507 - putative phospholipid ABC transporter-binding protein MlaD, at 521,513 to 522,064 _00507 OHPLBJKB_00508: OHPLBJKB_00508 - putative phospholipid-binding protein MlaC, at 522,083 to 522,718 _00508 OHPLBJKB_00509: OHPLBJKB_00509 - putative phospholipid ABC transporter-binding protein MlaB, at 522,718 to 523,011 _00509 OHPLBJKB_00510: OHPLBJKB_00510 - Acid stress protein IbaG, at 523,156 to 523,425 _00510 OHPLBJKB_00511: OHPLBJKB_00511 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 523,480 to 524,739 _00511 Position (kb) 522 523 524Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 521.722 kb on + strand, within OHPLBJKB_00507at 521.723 kb on - strand, within OHPLBJKB_00507at 521.725 kb on + strand, within OHPLBJKB_00507at 521.725 kb on + strand, within OHPLBJKB_00507at 521.725 kb on + strand, within OHPLBJKB_00507at 521.726 kb on - strand, within OHPLBJKB_00507at 521.726 kb on - strand, within OHPLBJKB_00507at 521.744 kb on + strand, within OHPLBJKB_00507at 521.745 kb on - strand, within OHPLBJKB_00507at 521.745 kb on - strand, within OHPLBJKB_00507at 521.780 kb on + strand, within OHPLBJKB_00507at 521.780 kb on + strand, within OHPLBJKB_00507at 521.780 kb on + strand, within OHPLBJKB_00507at 521.780 kb on + strand, within OHPLBJKB_00507at 521.781 kb on - strand, within OHPLBJKB_00507at 521.781 kb on - strand, within OHPLBJKB_00507at 521.781 kb on - strand, within OHPLBJKB_00507at 521.781 kb on - strand, within OHPLBJKB_00507at 521.782 kb on + strand, within OHPLBJKB_00507at 521.818 kb on + strand, within OHPLBJKB_00507at 521.819 kb on - strand, within OHPLBJKB_00507at 521.819 kb on - strand, within OHPLBJKB_00507at 521.819 kb on - strand, within OHPLBJKB_00507at 521.844 kb on - strand, within OHPLBJKB_00507at 521.844 kb on - strand, within OHPLBJKB_00507at 521.844 kb on - strand, within OHPLBJKB_00507at 521.908 kb on + strand, within OHPLBJKB_00507at 521.909 kb on - strand, within OHPLBJKB_00507at 521.923 kb on + strand, within OHPLBJKB_00507at 521.923 kb on + strand, within OHPLBJKB_00507at 521.924 kb on - strand, within OHPLBJKB_00507at 521.924 kb on - strand, within OHPLBJKB_00507at 521.924 kb on - strand, within OHPLBJKB_00507at 521.924 kb on - strand, within OHPLBJKB_00507at 521.924 kb on - strand, within OHPLBJKB_00507at 521.967 kb on - strand, within OHPLBJKB_00507at 521.975 kb on - strand, within OHPLBJKB_00507at 521.989 kb on + strand, within OHPLBJKB_00507at 521.989 kb on + strand, within OHPLBJKB_00507at 521.995 kb on + strand, within OHPLBJKB_00507at 522.025 kb on + strandat 522.029 kb on - strandat 522.053 kb on - strandat 522.063 kb on - strandat 522.088 kb on + strandat 522.096 kb on + strandat 522.097 kb on - strandat 522.165 kb on - strand, within OHPLBJKB_00508at 522.165 kb on - strand, within OHPLBJKB_00508at 522.245 kb on + strand, within OHPLBJKB_00508at 522.254 kb on - strand, within OHPLBJKB_00508at 522.281 kb on + strand, within OHPLBJKB_00508at 522.281 kb on + strand, within OHPLBJKB_00508at 522.282 kb on - strand, within OHPLBJKB_00508at 522.282 kb on - strand, within OHPLBJKB_00508at 522.282 kb on - strand, within OHPLBJKB_00508at 522.285 kb on + strand, within OHPLBJKB_00508at 522.285 kb on + strand, within OHPLBJKB_00508at 522.286 kb on - strand, within OHPLBJKB_00508at 522.286 kb on - strand, within OHPLBJKB_00508at 522.286 kb on - strand, within OHPLBJKB_00508at 522.286 kb on - strand, within OHPLBJKB_00508at 522.296 kb on + strand, within OHPLBJKB_00508at 522.326 kb on + strand, within OHPLBJKB_00508at 522.326 kb on + strand, within OHPLBJKB_00508at 522.326 kb on + strand, within OHPLBJKB_00508at 522.327 kb on - strand, within OHPLBJKB_00508at 522.327 kb on - strand, within OHPLBJKB_00508at 522.327 kb on - strand, within OHPLBJKB_00508at 522.327 kb on - strand, within OHPLBJKB_00508at 522.359 kb on + strand, within OHPLBJKB_00508at 522.395 kb on + strand, within OHPLBJKB_00508at 522.416 kb on + strand, within OHPLBJKB_00508at 522.416 kb on + strand, within OHPLBJKB_00508at 522.416 kb on + strand, within OHPLBJKB_00508at 522.416 kb on + strand, within OHPLBJKB_00508at 522.416 kb on + strand, within OHPLBJKB_00508at 522.416 kb on + strand, within OHPLBJKB_00508at 522.416 kb on + strand, within OHPLBJKB_00508at 522.416 kb on + strand, within OHPLBJKB_00508at 522.417 kb on - strand, within OHPLBJKB_00508at 522.478 kb on + strand, within OHPLBJKB_00508at 522.572 kb on + strand, within OHPLBJKB_00508at 522.573 kb on - strand, within OHPLBJKB_00508at 522.599 kb on - strand, within OHPLBJKB_00508at 522.717 kb on - strandat 522.835 kb on - strand, within OHPLBJKB_00509at 522.850 kb on - strand, within OHPLBJKB_00509at 522.948 kb on - strand, within OHPLBJKB_00509at 522.961 kb on + strand, within OHPLBJKB_00509at 522.961 kb on + strand, within OHPLBJKB_00509at 522.961 kb on + strand, within OHPLBJKB_00509at 522.961 kb on + strand, within OHPLBJKB_00509at 522.961 kb on + strand, within OHPLBJKB_00509at 522.961 kb on + strand, within OHPLBJKB_00509at 522.962 kb on - strand, within OHPLBJKB_00509at 522.962 kb on - strand, within OHPLBJKB_00509at 522.962 kb on - strand, within OHPLBJKB_00509at 522.962 kb on - strand, within OHPLBJKB_00509at 522.962 kb on - strand, within OHPLBJKB_00509at 522.962 kb on - strand, within OHPLBJKB_00509at 522.962 kb on - strand, within OHPLBJKB_00509at 522.962 kb on - strand, within OHPLBJKB_00509at 522.962 kb on - strand, within OHPLBJKB_00509at 522.964 kb on - strand, within OHPLBJKB_00509at 523.104 kb on + strandat 523.105 kb on - strandat 523.336 kb on + strand, within OHPLBJKB_00510at 523.336 kb on + strand, within OHPLBJKB_00510at 523.336 kb on + strand, within OHPLBJKB_00510at 523.336 kb on + strand, within OHPLBJKB_00510at 523.336 kb on + strand, within OHPLBJKB_00510at 523.336 kb on + strand, within OHPLBJKB_00510at 523.338 kb on + strand, within OHPLBJKB_00510at 523.338 kb on + strand, within OHPLBJKB_00510at 523.378 kb on + strand, within OHPLBJKB_00510at 523.378 kb on + strand, within OHPLBJKB_00510at 523.378 kb on + strand, within OHPLBJKB_00510at 523.378 kb on + strand, within OHPLBJKB_00510at 523.428 kb on + strandat 523.428 kb on + strandat 523.452 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage
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521,722 + OHPLBJKB_00507 0.38 +1.8
521,723 - OHPLBJKB_00507 0.38 +2.2
521,725 + OHPLBJKB_00507 0.38 -1.3
521,725 + OHPLBJKB_00507 0.38 +0.1
521,725 + OHPLBJKB_00507 0.38 +1.8
521,726 - OHPLBJKB_00507 0.39 +2.5
521,726 - OHPLBJKB_00507 0.39 +0.8
521,744 + OHPLBJKB_00507 0.42 +2.1
521,745 - OHPLBJKB_00507 0.42 +1.4
521,745 - OHPLBJKB_00507 0.42 +1.9
521,780 + OHPLBJKB_00507 0.48 +1.8
521,780 + OHPLBJKB_00507 0.48 +2.3
521,780 + OHPLBJKB_00507 0.48 +1.2
521,780 + OHPLBJKB_00507 0.48 +0.3
521,781 - OHPLBJKB_00507 0.49 +2.4
521,781 - OHPLBJKB_00507 0.49 +0.3
521,781 - OHPLBJKB_00507 0.49 +4.8
521,781 - OHPLBJKB_00507 0.49 +3.0
521,782 + OHPLBJKB_00507 0.49 +4.2
521,818 + OHPLBJKB_00507 0.55 +3.4
521,819 - OHPLBJKB_00507 0.55 +1.6
521,819 - OHPLBJKB_00507 0.55 +0.7
521,819 - OHPLBJKB_00507 0.55 +2.9
521,844 - OHPLBJKB_00507 0.60 +0.1
521,844 - OHPLBJKB_00507 0.60 +1.0
521,844 - OHPLBJKB_00507 0.60 +1.3
521,908 + OHPLBJKB_00507 0.72 +1.8
521,909 - OHPLBJKB_00507 0.72 +2.4
521,923 + OHPLBJKB_00507 0.74 +3.4
521,923 + OHPLBJKB_00507 0.74 +2.0
521,924 - OHPLBJKB_00507 0.74 +2.4
521,924 - OHPLBJKB_00507 0.74 +5.2
521,924 - OHPLBJKB_00507 0.74 +3.1
521,924 - OHPLBJKB_00507 0.74 +0.6
521,924 - OHPLBJKB_00507 0.74 -0.2
521,967 - OHPLBJKB_00507 0.82 +2.6
521,975 - OHPLBJKB_00507 0.84 +0.8
521,989 + OHPLBJKB_00507 0.86 -0.2
521,989 + OHPLBJKB_00507 0.86 +0.4
521,995 + OHPLBJKB_00507 0.87 -0.5
522,025 + -0.9
522,029 - +1.3
522,053 - +1.4
522,063 - +0.6
522,088 + +2.6
522,096 + -2.5
522,097 - +2.6
522,165 - OHPLBJKB_00508 0.13 +2.4
522,165 - OHPLBJKB_00508 0.13 +1.9
522,245 + OHPLBJKB_00508 0.25 +1.2
522,254 - OHPLBJKB_00508 0.27 +1.0
522,281 + OHPLBJKB_00508 0.31 +1.5
522,281 + OHPLBJKB_00508 0.31 +1.2
522,282 - OHPLBJKB_00508 0.31 +1.0
522,282 - OHPLBJKB_00508 0.31 +2.2
522,282 - OHPLBJKB_00508 0.31 +1.3
522,285 + OHPLBJKB_00508 0.32 +1.2
522,285 + OHPLBJKB_00508 0.32 +2.5
522,286 - OHPLBJKB_00508 0.32 +2.1
522,286 - OHPLBJKB_00508 0.32 +3.3
522,286 - OHPLBJKB_00508 0.32 +1.4
522,286 - OHPLBJKB_00508 0.32 +2.8
522,296 + OHPLBJKB_00508 0.33 +1.8
522,326 + OHPLBJKB_00508 0.38 +3.2
522,326 + OHPLBJKB_00508 0.38 +2.6
522,326 + OHPLBJKB_00508 0.38 +1.3
522,327 - OHPLBJKB_00508 0.38 +3.0
522,327 - OHPLBJKB_00508 0.38 +2.8
522,327 - OHPLBJKB_00508 0.38 +1.3
522,327 - OHPLBJKB_00508 0.38 +3.8
522,359 + OHPLBJKB_00508 0.43 +1.9
522,395 + OHPLBJKB_00508 0.49 +1.2
522,416 + OHPLBJKB_00508 0.52 +0.4
522,416 + OHPLBJKB_00508 0.52 +1.5
522,416 + OHPLBJKB_00508 0.52 +2.4
522,416 + OHPLBJKB_00508 0.52 +2.8
522,416 + OHPLBJKB_00508 0.52 +0.7
522,416 + OHPLBJKB_00508 0.52 -0.1
522,416 + OHPLBJKB_00508 0.52 +0.9
522,416 + OHPLBJKB_00508 0.52 +1.7
522,417 - OHPLBJKB_00508 0.53 +4.0
522,478 + OHPLBJKB_00508 0.62 +2.0
522,572 + OHPLBJKB_00508 0.77 +1.0
522,573 - OHPLBJKB_00508 0.77 -0.0
522,599 - OHPLBJKB_00508 0.81 +2.6
522,717 - +2.3
522,835 - OHPLBJKB_00509 0.40 +2.2
522,850 - OHPLBJKB_00509 0.45 +2.6
522,948 - OHPLBJKB_00509 0.78 +2.5
522,961 + OHPLBJKB_00509 0.83 +1.3
522,961 + OHPLBJKB_00509 0.83 +1.8
522,961 + OHPLBJKB_00509 0.83 +2.1
522,961 + OHPLBJKB_00509 0.83 +1.6
522,961 + OHPLBJKB_00509 0.83 +1.7
522,961 + OHPLBJKB_00509 0.83 +1.7
522,962 - OHPLBJKB_00509 0.83 +0.9
522,962 - OHPLBJKB_00509 0.83 +0.8
522,962 - OHPLBJKB_00509 0.83 +2.3
522,962 - OHPLBJKB_00509 0.83 +3.0
522,962 - OHPLBJKB_00509 0.83 +0.2
522,962 - OHPLBJKB_00509 0.83 +2.3
522,962 - OHPLBJKB_00509 0.83 +2.1
522,962 - OHPLBJKB_00509 0.83 +2.2
522,962 - OHPLBJKB_00509 0.83 +2.1
522,964 - OHPLBJKB_00509 0.84 +1.7
523,104 + -0.0
523,105 - +0.9
523,336 + OHPLBJKB_00510 0.67 -1.7
523,336 + OHPLBJKB_00510 0.67 +0.7
523,336 + OHPLBJKB_00510 0.67 -3.0
523,336 + OHPLBJKB_00510 0.67 -0.3
523,336 + OHPLBJKB_00510 0.67 +0.1
523,336 + OHPLBJKB_00510 0.67 -0.6
523,338 + OHPLBJKB_00510 0.67 -0.4
523,338 + OHPLBJKB_00510 0.67 +0.5
523,378 + OHPLBJKB_00510 0.82 -1.0
523,378 + OHPLBJKB_00510 0.82 -0.4
523,378 + OHPLBJKB_00510 0.82 +1.5
523,378 + OHPLBJKB_00510 0.82 +0.3
523,428 + -0.4
523,428 + +0.2
523,452 + -1.4

Or see this region's nucleotide sequence