Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00313

Experiment: No phage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00312 and OHPLBJKB_00313 are separated by 400 nucleotidesOHPLBJKB_00313 and OHPLBJKB_00314 are separated by 56 nucleotides OHPLBJKB_00312: OHPLBJKB_00312 - Type IV pilus biogenesis and competence protein PilQ, at 345,871 to 347,079 _00312 OHPLBJKB_00313: OHPLBJKB_00313 - Shikimate kinase 1, at 347,480 to 348,001 _00313 OHPLBJKB_00314: OHPLBJKB_00314 - 3-dehydroquinate synthase, at 348,058 to 349,146 _00314 Position (kb) 347 348 349Strain fitness (log2 ratio) -3 -2 -1 0 1at 346.665 kb on + strand, within OHPLBJKB_00312at 346.799 kb on + strand, within OHPLBJKB_00312at 346.800 kb on - strand, within OHPLBJKB_00312at 346.800 kb on - strand, within OHPLBJKB_00312at 346.832 kb on + strand, within OHPLBJKB_00312at 346.832 kb on + strand, within OHPLBJKB_00312at 346.833 kb on - strand, within OHPLBJKB_00312at 346.964 kb on + strandat 346.965 kb on - strandat 347.001 kb on - strandat 347.040 kb on - strandat 347.040 kb on - strandat 347.077 kb on + strandat 347.077 kb on + strandat 347.087 kb on + strandat 347.088 kb on - strandat 347.125 kb on + strandat 347.125 kb on + strandat 347.125 kb on + strandat 347.126 kb on - strandat 347.126 kb on - strandat 347.126 kb on - strandat 347.142 kb on + strandat 347.142 kb on + strandat 347.143 kb on - strandat 347.143 kb on - strandat 347.146 kb on + strandat 347.146 kb on + strandat 347.146 kb on + strandat 347.146 kb on + strandat 347.146 kb on + strandat 347.146 kb on + strandat 347.146 kb on + strandat 347.146 kb on + strandat 347.147 kb on - strandat 347.147 kb on - strandat 347.147 kb on - strandat 347.147 kb on - strandat 347.147 kb on - strandat 347.147 kb on - strandat 347.147 kb on - strandat 347.151 kb on + strandat 347.151 kb on + strandat 347.151 kb on + strandat 347.152 kb on - strandat 347.152 kb on - strandat 347.152 kb on - strandat 347.152 kb on - strandat 347.244 kb on - strandat 347.267 kb on - strandat 347.359 kb on + strandat 347.391 kb on + strandat 347.446 kb on - strandat 347.458 kb on + strandat 347.459 kb on - strandat 347.459 kb on - strandat 347.464 kb on + strandat 347.464 kb on + strandat 347.464 kb on + strandat 347.464 kb on + strandat 347.465 kb on - strandat 347.465 kb on - strandat 347.465 kb on - strandat 347.467 kb on + strandat 347.467 kb on + strandat 347.467 kb on + strandat 347.468 kb on - strandat 347.468 kb on - strandat 347.498 kb on - strandat 347.550 kb on + strand, within OHPLBJKB_00313at 347.576 kb on + strand, within OHPLBJKB_00313at 347.910 kb on - strand, within OHPLBJKB_00313at 347.977 kb on + strandat 347.977 kb on + strandat 348.000 kb on - strandat 348.000 kb on - strandat 348.011 kb on + strandat 348.011 kb on + strandat 348.011 kb on + strandat 348.011 kb on + strandat 348.011 kb on + strandat 348.012 kb on - strandat 348.012 kb on - strandat 348.012 kb on - strandat 348.013 kb on + strandat 348.013 kb on + strandat 348.013 kb on + strandat 348.013 kb on + strandat 348.014 kb on - strandat 348.014 kb on - strandat 348.014 kb on - strandat 348.015 kb on + strandat 348.015 kb on + strandat 348.015 kb on + strandat 348.015 kb on + strandat 348.015 kb on + strandat 348.015 kb on + strandat 348.015 kb on + strandat 348.015 kb on + strandat 348.016 kb on - strandat 348.016 kb on - strandat 348.016 kb on - strandat 348.016 kb on - strandat 348.016 kb on - strandat 348.016 kb on - strandat 348.016 kb on - strandat 348.031 kb on + strandat 348.037 kb on - strandat 348.037 kb on - strandat 348.040 kb on + strandat 348.041 kb on - strandat 348.090 kb on + strandat 348.090 kb on + strandat 348.090 kb on + strandat 348.090 kb on + strandat 348.090 kb on + strandat 348.090 kb on + strandat 348.090 kb on + strandat 348.090 kb on + strandat 348.090 kb on + strandat 348.091 kb on - strandat 348.091 kb on - strandat 348.091 kb on - strandat 348.091 kb on - strandat 348.091 kb on - strandat 348.091 kb on - strandat 348.103 kb on - strandat 348.202 kb on + strand, within OHPLBJKB_00314at 348.281 kb on - strand, within OHPLBJKB_00314at 348.282 kb on + strand, within OHPLBJKB_00314at 348.282 kb on + strand, within OHPLBJKB_00314at 348.283 kb on - strand, within OHPLBJKB_00314at 348.348 kb on + strand, within OHPLBJKB_00314at 348.349 kb on - strand, within OHPLBJKB_00314at 348.349 kb on - strand, within OHPLBJKB_00314at 348.349 kb on - strand, within OHPLBJKB_00314at 348.375 kb on - strand, within OHPLBJKB_00314at 348.620 kb on - strand, within OHPLBJKB_00314at 348.620 kb on - strand, within OHPLBJKB_00314at 348.707 kb on - strand, within OHPLBJKB_00314at 348.711 kb on + strand, within OHPLBJKB_00314at 348.711 kb on + strand, within OHPLBJKB_00314at 348.711 kb on + strand, within OHPLBJKB_00314at 348.712 kb on - strand, within OHPLBJKB_00314at 348.845 kb on + strand, within OHPLBJKB_00314at 348.845 kb on + strand, within OHPLBJKB_00314at 348.845 kb on + strand, within OHPLBJKB_00314at 348.845 kb on + strand, within OHPLBJKB_00314at 348.846 kb on - strand, within OHPLBJKB_00314at 348.912 kb on + strand, within OHPLBJKB_00314at 348.933 kb on + strand, within OHPLBJKB_00314at 348.936 kb on + strand, within OHPLBJKB_00314at 348.936 kb on + strand, within OHPLBJKB_00314at 348.936 kb on + strand, within OHPLBJKB_00314at 348.936 kb on + strand, within OHPLBJKB_00314at 348.937 kb on - strand, within OHPLBJKB_00314at 348.937 kb on - strand, within OHPLBJKB_00314at 348.937 kb on - strand, within OHPLBJKB_00314at 348.938 kb on + strand, within OHPLBJKB_00314

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage
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346,665 + OHPLBJKB_00312 0.66 -0.7
346,799 + OHPLBJKB_00312 0.77 +0.5
346,800 - OHPLBJKB_00312 0.77 -1.4
346,800 - OHPLBJKB_00312 0.77 +0.5
346,832 + OHPLBJKB_00312 0.79 -0.1
346,832 + OHPLBJKB_00312 0.79 +0.0
346,833 - OHPLBJKB_00312 0.80 +0.9
346,964 + -1.2
346,965 - +0.3
347,001 - -0.5
347,040 - +0.3
347,040 - +1.0
347,077 + -0.4
347,077 + +0.6
347,087 + -0.0
347,088 - -0.7
347,125 + +0.4
347,125 + +0.1
347,125 + -0.6
347,126 - -0.8
347,126 - +0.0
347,126 - -2.2
347,142 + -0.1
347,142 + -0.6
347,143 - +0.5
347,143 - +0.3
347,146 + -0.6
347,146 + -1.3
347,146 + +0.4
347,146 + +0.6
347,146 + +0.2
347,146 + -0.7
347,146 + +1.2
347,146 + +0.7
347,147 - +0.9
347,147 - -2.2
347,147 - +0.0
347,147 - +0.2
347,147 - -0.0
347,147 - -1.3
347,147 - +1.4
347,151 + +1.4
347,151 + +0.8
347,151 + +0.4
347,152 - -1.5
347,152 - +0.1
347,152 - +0.4
347,152 - -0.2
347,244 - -0.6
347,267 - -0.9
347,359 + +0.4
347,391 + -0.3
347,446 - -1.1
347,458 + -0.2
347,459 - -0.6
347,459 - -0.5
347,464 + -0.7
347,464 + -2.0
347,464 + -0.3
347,464 + +0.4
347,465 - +0.7
347,465 - -1.3
347,465 - -2.6
347,467 + -0.2
347,467 + +0.1
347,467 + -1.0
347,468 - +0.7
347,468 - -0.2
347,498 - +0.8
347,550 + OHPLBJKB_00313 0.13 +0.1
347,576 + OHPLBJKB_00313 0.18 -1.8
347,910 - OHPLBJKB_00313 0.82 -0.6
347,977 + -1.3
347,977 + -0.8
348,000 - -0.3
348,000 - -0.8
348,011 + -0.1
348,011 + -2.6
348,011 + +0.1
348,011 + -0.6
348,011 + -0.1
348,012 - -1.7
348,012 - -2.4
348,012 - -0.7
348,013 + +0.1
348,013 + +0.6
348,013 + -1.1
348,013 + +0.1
348,014 - -0.1
348,014 - +1.1
348,014 - -0.5
348,015 + +0.9
348,015 + +0.6
348,015 + -0.6
348,015 + -2.4
348,015 + +0.3
348,015 + +0.3
348,015 + +0.2
348,015 + -0.9
348,016 - -0.2
348,016 - +0.1
348,016 - +0.7
348,016 - -2.0
348,016 - -0.0
348,016 - -0.8
348,016 - -0.4
348,031 + +0.4
348,037 - +0.1
348,037 - -1.1
348,040 + -0.3
348,041 - +1.3
348,090 + -3.1
348,090 + -2.3
348,090 + +1.1
348,090 + -0.1
348,090 + +0.7
348,090 + -0.6
348,090 + -0.6
348,090 + -0.3
348,090 + -1.6
348,091 - +0.5
348,091 - +0.7
348,091 - -1.5
348,091 - -0.9
348,091 - -1.6
348,091 - -1.6
348,103 - -1.3
348,202 + OHPLBJKB_00314 0.13 -0.4
348,281 - OHPLBJKB_00314 0.20 +0.3
348,282 + OHPLBJKB_00314 0.21 -1.1
348,282 + OHPLBJKB_00314 0.21 -1.0
348,283 - OHPLBJKB_00314 0.21 -0.9
348,348 + OHPLBJKB_00314 0.27 -1.6
348,349 - OHPLBJKB_00314 0.27 -0.3
348,349 - OHPLBJKB_00314 0.27 +0.4
348,349 - OHPLBJKB_00314 0.27 -1.5
348,375 - OHPLBJKB_00314 0.29 -0.4
348,620 - OHPLBJKB_00314 0.52 -1.7
348,620 - OHPLBJKB_00314 0.52 -1.4
348,707 - OHPLBJKB_00314 0.60 +0.1
348,711 + OHPLBJKB_00314 0.60 -1.9
348,711 + OHPLBJKB_00314 0.60 -3.2
348,711 + OHPLBJKB_00314 0.60 +0.3
348,712 - OHPLBJKB_00314 0.60 -1.1
348,845 + OHPLBJKB_00314 0.72 -1.8
348,845 + OHPLBJKB_00314 0.72 -1.2
348,845 + OHPLBJKB_00314 0.72 -1.1
348,845 + OHPLBJKB_00314 0.72 -0.3
348,846 - OHPLBJKB_00314 0.72 -1.6
348,912 + OHPLBJKB_00314 0.78 +1.1
348,933 + OHPLBJKB_00314 0.80 -0.5
348,936 + OHPLBJKB_00314 0.81 +0.2
348,936 + OHPLBJKB_00314 0.81 -2.2
348,936 + OHPLBJKB_00314 0.81 -2.5
348,936 + OHPLBJKB_00314 0.81 -0.3
348,937 - OHPLBJKB_00314 0.81 -2.8
348,937 - OHPLBJKB_00314 0.81 -0.6
348,937 - OHPLBJKB_00314 0.81 -1.3
348,938 + OHPLBJKB_00314 0.81 +0.1

Or see this region's nucleotide sequence