Experiment: Phage Lil 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_04206 and OHPLBJKB_04207 are separated by 189 nucleotides OHPLBJKB_04207 and OHPLBJKB_04208 are separated by 9 nucleotides
OHPLBJKB_04206: OHPLBJKB_04206 - Xaa-Pro dipeptidase, at 4,423,247 to 4,424,578
_04206
OHPLBJKB_04207: OHPLBJKB_04207 - Fatty acid oxidation complex subunit alpha, at 4,424,768 to 4,426,957
_04207
OHPLBJKB_04208: OHPLBJKB_04208 - 3-ketoacyl-CoA thiolase FadA, at 4,426,967 to 4,428,130
_04208
Position (kb) 4424
4425
4426
4427 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4423.825 kb on + strand, within OHPLBJKB_04206 at 4423.826 kb on - strand, within OHPLBJKB_04206 at 4423.827 kb on + strand, within OHPLBJKB_04206 at 4423.827 kb on + strand, within OHPLBJKB_04206 at 4423.827 kb on + strand, within OHPLBJKB_04206 at 4423.828 kb on - strand, within OHPLBJKB_04206 at 4423.894 kb on - strand, within OHPLBJKB_04206 at 4423.894 kb on - strand, within OHPLBJKB_04206 at 4423.894 kb on - strand, within OHPLBJKB_04206 at 4423.939 kb on - strand, within OHPLBJKB_04206 at 4423.939 kb on - strand, within OHPLBJKB_04206 at 4423.939 kb on - strand, within OHPLBJKB_04206 at 4423.939 kb on - strand, within OHPLBJKB_04206 at 4423.943 kb on + strand, within OHPLBJKB_04206 at 4423.943 kb on + strand, within OHPLBJKB_04206 at 4423.944 kb on - strand, within OHPLBJKB_04206 at 4423.944 kb on - strand, within OHPLBJKB_04206 at 4423.977 kb on + strand, within OHPLBJKB_04206 at 4423.977 kb on + strand, within OHPLBJKB_04206 at 4424.071 kb on + strand, within OHPLBJKB_04206 at 4424.071 kb on + strand, within OHPLBJKB_04206 at 4424.071 kb on + strand, within OHPLBJKB_04206 at 4424.072 kb on - strand, within OHPLBJKB_04206 at 4424.085 kb on + strand, within OHPLBJKB_04206 at 4424.109 kb on + strand, within OHPLBJKB_04206 at 4424.110 kb on - strand, within OHPLBJKB_04206 at 4424.110 kb on - strand, within OHPLBJKB_04206 at 4424.194 kb on + strand, within OHPLBJKB_04206 at 4424.331 kb on + strand, within OHPLBJKB_04206 at 4424.332 kb on - strand, within OHPLBJKB_04206 at 4424.332 kb on - strand, within OHPLBJKB_04206 at 4424.428 kb on + strand, within OHPLBJKB_04206 at 4424.483 kb on - strand at 4424.486 kb on + strand at 4424.486 kb on + strand at 4424.487 kb on - strand at 4424.534 kb on + strand at 4424.539 kb on + strand at 4424.539 kb on + strand at 4424.539 kb on + strand at 4424.539 kb on + strand at 4424.539 kb on + strand at 4424.539 kb on + strand at 4424.540 kb on - strand at 4424.540 kb on - strand at 4424.540 kb on - strand at 4424.540 kb on - strand at 4424.543 kb on + strand at 4424.543 kb on + strand at 4424.543 kb on + strand at 4424.543 kb on + strand at 4424.543 kb on + strand at 4424.543 kb on + strand at 4424.544 kb on - strand at 4424.544 kb on - strand at 4424.544 kb on - strand at 4424.544 kb on - strand at 4424.544 kb on - strand at 4424.546 kb on - strand at 4424.605 kb on + strand at 4424.605 kb on + strand at 4424.606 kb on - strand at 4424.606 kb on - strand at 4424.606 kb on - strand at 4424.606 kb on - strand at 4424.620 kb on + strand at 4424.774 kb on + strand at 4424.774 kb on + strand at 4424.774 kb on + strand at 4424.774 kb on + strand at 4424.775 kb on - strand at 4424.792 kb on + strand at 4424.793 kb on - strand at 4424.793 kb on - strand at 4424.829 kb on + strand at 4424.829 kb on + strand at 4424.830 kb on - strand at 4424.830 kb on - strand at 4424.851 kb on + strand at 4424.851 kb on + strand at 4424.854 kb on + strand at 4424.938 kb on - strand at 4424.938 kb on - strand at 4424.938 kb on - strand at 4424.938 kb on - strand at 4425.018 kb on + strand, within OHPLBJKB_04207 at 4425.018 kb on + strand, within OHPLBJKB_04207 at 4425.019 kb on - strand, within OHPLBJKB_04207 at 4425.019 kb on - strand, within OHPLBJKB_04207 at 4425.019 kb on - strand, within OHPLBJKB_04207 at 4425.019 kb on - strand, within OHPLBJKB_04207 at 4425.101 kb on + strand, within OHPLBJKB_04207 at 4425.101 kb on + strand, within OHPLBJKB_04207 at 4425.222 kb on + strand, within OHPLBJKB_04207 at 4425.222 kb on + strand, within OHPLBJKB_04207 at 4425.222 kb on + strand, within OHPLBJKB_04207 at 4425.223 kb on - strand, within OHPLBJKB_04207 at 4425.226 kb on + strand, within OHPLBJKB_04207 at 4425.226 kb on + strand, within OHPLBJKB_04207 at 4425.226 kb on + strand, within OHPLBJKB_04207 at 4425.226 kb on + strand, within OHPLBJKB_04207 at 4425.226 kb on + strand, within OHPLBJKB_04207 at 4425.227 kb on - strand, within OHPLBJKB_04207 at 4425.227 kb on - strand, within OHPLBJKB_04207 at 4425.227 kb on - strand, within OHPLBJKB_04207 at 4425.235 kb on + strand, within OHPLBJKB_04207 at 4425.235 kb on + strand, within OHPLBJKB_04207 at 4425.235 kb on + strand, within OHPLBJKB_04207 at 4425.235 kb on + strand, within OHPLBJKB_04207 at 4425.236 kb on - strand, within OHPLBJKB_04207 at 4425.327 kb on + strand, within OHPLBJKB_04207 at 4425.659 kb on + strand, within OHPLBJKB_04207 at 4425.659 kb on + strand, within OHPLBJKB_04207 at 4425.659 kb on + strand, within OHPLBJKB_04207 at 4425.660 kb on - strand, within OHPLBJKB_04207 at 4425.660 kb on - strand, within OHPLBJKB_04207 at 4425.663 kb on + strand, within OHPLBJKB_04207 at 4425.663 kb on + strand, within OHPLBJKB_04207 at 4425.664 kb on - strand, within OHPLBJKB_04207 at 4425.797 kb on - strand, within OHPLBJKB_04207 at 4425.797 kb on - strand, within OHPLBJKB_04207 at 4425.797 kb on - strand, within OHPLBJKB_04207 at 4425.797 kb on - strand, within OHPLBJKB_04207 at 4425.957 kb on + strand, within OHPLBJKB_04207 at 4425.958 kb on - strand, within OHPLBJKB_04207 at 4425.997 kb on - strand, within OHPLBJKB_04207 at 4426.045 kb on + strand, within OHPLBJKB_04207 at 4426.045 kb on + strand, within OHPLBJKB_04207 at 4426.149 kb on + strand, within OHPLBJKB_04207 at 4426.272 kb on + strand, within OHPLBJKB_04207 at 4426.273 kb on - strand, within OHPLBJKB_04207 at 4426.273 kb on - strand, within OHPLBJKB_04207 at 4426.273 kb on - strand, within OHPLBJKB_04207 at 4426.273 kb on - strand, within OHPLBJKB_04207 at 4426.273 kb on - strand, within OHPLBJKB_04207 at 4426.382 kb on + strand, within OHPLBJKB_04207 at 4426.383 kb on - strand, within OHPLBJKB_04207 at 4426.541 kb on + strand, within OHPLBJKB_04207 at 4426.542 kb on - strand, within OHPLBJKB_04207 at 4426.543 kb on + strand, within OHPLBJKB_04207 at 4426.543 kb on + strand, within OHPLBJKB_04207 at 4426.543 kb on + strand, within OHPLBJKB_04207 at 4426.543 kb on + strand, within OHPLBJKB_04207 at 4426.543 kb on + strand, within OHPLBJKB_04207 at 4426.543 kb on + strand, within OHPLBJKB_04207 at 4426.544 kb on - strand, within OHPLBJKB_04207 at 4426.561 kb on + strand, within OHPLBJKB_04207 at 4426.561 kb on + strand, within OHPLBJKB_04207 at 4426.562 kb on - strand, within OHPLBJKB_04207 at 4426.562 kb on - strand, within OHPLBJKB_04207 at 4426.732 kb on + strand, within OHPLBJKB_04207 at 4426.814 kb on + strand at 4426.814 kb on + strand at 4426.815 kb on - strand at 4426.835 kb on + strand at 4426.857 kb on - strand at 4426.879 kb on + strand at 4426.880 kb on - strand at 4426.904 kb on + strand at 4426.956 kb on - strand at 4427.067 kb on + strand at 4427.067 kb on + strand at 4427.067 kb on + strand at 4427.068 kb on - strand at 4427.068 kb on - strand at 4427.127 kb on - strand, within OHPLBJKB_04208 at 4427.127 kb on - strand, within OHPLBJKB_04208 at 4427.164 kb on + strand, within OHPLBJKB_04208 at 4427.164 kb on + strand, within OHPLBJKB_04208 at 4427.164 kb on + strand, within OHPLBJKB_04208 at 4427.165 kb on - strand, within OHPLBJKB_04208 at 4427.165 kb on - strand, within OHPLBJKB_04208 at 4427.200 kb on - strand, within OHPLBJKB_04208 at 4427.200 kb on - strand, within OHPLBJKB_04208 at 4427.281 kb on + strand, within OHPLBJKB_04208 at 4427.326 kb on + strand, within OHPLBJKB_04208 at 4427.434 kb on + strand, within OHPLBJKB_04208 at 4427.578 kb on + strand, within OHPLBJKB_04208 at 4427.742 kb on + strand, within OHPLBJKB_04208 at 4427.742 kb on + strand, within OHPLBJKB_04208 at 4427.742 kb on + strand, within OHPLBJKB_04208 at 4427.743 kb on - strand, within OHPLBJKB_04208 at 4427.749 kb on + strand, within OHPLBJKB_04208
Per-strain Table
Position Strand Gene LocusTag Fraction Phage Lil 3 remove 4,423,825 + OHPLBJKB_04206 0.43 -0.2 4,423,826 - OHPLBJKB_04206 0.43 +2.3 4,423,827 + OHPLBJKB_04206 0.44 -0.6 4,423,827 + OHPLBJKB_04206 0.44 +0.2 4,423,827 + OHPLBJKB_04206 0.44 +0.4 4,423,828 - OHPLBJKB_04206 0.44 -0.8 4,423,894 - OHPLBJKB_04206 0.49 -1.9 4,423,894 - OHPLBJKB_04206 0.49 -0.0 4,423,894 - OHPLBJKB_04206 0.49 +1.1 4,423,939 - OHPLBJKB_04206 0.52 +0.1 4,423,939 - OHPLBJKB_04206 0.52 -0.0 4,423,939 - OHPLBJKB_04206 0.52 -0.7 4,423,939 - OHPLBJKB_04206 0.52 -1.6 4,423,943 + OHPLBJKB_04206 0.52 -0.4 4,423,943 + OHPLBJKB_04206 0.52 -1.4 4,423,944 - OHPLBJKB_04206 0.52 +1.3 4,423,944 - OHPLBJKB_04206 0.52 -0.7 4,423,977 + OHPLBJKB_04206 0.55 +0.8 4,423,977 + OHPLBJKB_04206 0.55 -0.3 4,424,071 + OHPLBJKB_04206 0.62 +0.9 4,424,071 + OHPLBJKB_04206 0.62 +0.2 4,424,071 + OHPLBJKB_04206 0.62 -2.1 4,424,072 - OHPLBJKB_04206 0.62 -0.2 4,424,085 + OHPLBJKB_04206 0.63 -0.9 4,424,109 + OHPLBJKB_04206 0.65 +0.2 4,424,110 - OHPLBJKB_04206 0.65 -0.7 4,424,110 - OHPLBJKB_04206 0.65 +0.2 4,424,194 + OHPLBJKB_04206 0.71 +0.2 4,424,331 + OHPLBJKB_04206 0.81 -1.2 4,424,332 - OHPLBJKB_04206 0.81 -2.0 4,424,332 - OHPLBJKB_04206 0.81 -0.1 4,424,428 + OHPLBJKB_04206 0.89 -0.1 4,424,483 - -2.4 4,424,486 + -1.3 4,424,486 + +0.6 4,424,487 - -0.7 4,424,534 + +2.9 4,424,539 + +1.1 4,424,539 + -0.1 4,424,539 + -1.1 4,424,539 + -0.4 4,424,539 + +0.4 4,424,539 + +0.0 4,424,540 - -0.1 4,424,540 - +0.1 4,424,540 - +0.2 4,424,540 - +0.1 4,424,543 + -0.1 4,424,543 + +1.1 4,424,543 + -1.3 4,424,543 + -0.3 4,424,543 + +0.5 4,424,543 + +0.2 4,424,544 - -0.3 4,424,544 - +0.2 4,424,544 - -0.4 4,424,544 - -0.8 4,424,544 - -2.3 4,424,546 - -1.0 4,424,605 + +0.5 4,424,605 + +1.5 4,424,606 - -1.1 4,424,606 - -0.7 4,424,606 - +0.4 4,424,606 - -0.0 4,424,620 + -1.0 4,424,774 + -0.2 4,424,774 + -2.4 4,424,774 + -0.7 4,424,774 + +2.5 4,424,775 - -1.6 4,424,792 + -1.0 4,424,793 - +0.5 4,424,793 - +0.5 4,424,829 + +1.0 4,424,829 + -0.1 4,424,830 - -1.2 4,424,830 - +0.0 4,424,851 + -0.9 4,424,851 + +0.4 4,424,854 + -0.0 4,424,938 - -2.6 4,424,938 - -1.8 4,424,938 - +1.7 4,424,938 - +0.4 4,425,018 + OHPLBJKB_04207 0.11 -0.5 4,425,018 + OHPLBJKB_04207 0.11 -0.9 4,425,019 - OHPLBJKB_04207 0.11 -0.6 4,425,019 - OHPLBJKB_04207 0.11 +1.2 4,425,019 - OHPLBJKB_04207 0.11 -0.2 4,425,019 - OHPLBJKB_04207 0.11 -0.3 4,425,101 + OHPLBJKB_04207 0.15 -1.4 4,425,101 + OHPLBJKB_04207 0.15 +0.9 4,425,222 + OHPLBJKB_04207 0.21 -1.2 4,425,222 + OHPLBJKB_04207 0.21 -0.3 4,425,222 + OHPLBJKB_04207 0.21 +0.2 4,425,223 - OHPLBJKB_04207 0.21 -0.1 4,425,226 + OHPLBJKB_04207 0.21 +0.6 4,425,226 + OHPLBJKB_04207 0.21 -0.3 4,425,226 + OHPLBJKB_04207 0.21 -0.8 4,425,226 + OHPLBJKB_04207 0.21 +0.5 4,425,226 + OHPLBJKB_04207 0.21 -0.4 4,425,227 - OHPLBJKB_04207 0.21 +0.7 4,425,227 - OHPLBJKB_04207 0.21 -0.5 4,425,227 - OHPLBJKB_04207 0.21 +1.9 4,425,235 + OHPLBJKB_04207 0.21 -0.4 4,425,235 + OHPLBJKB_04207 0.21 +1.5 4,425,235 + OHPLBJKB_04207 0.21 -0.2 4,425,235 + OHPLBJKB_04207 0.21 -1.1 4,425,236 - OHPLBJKB_04207 0.21 +1.3 4,425,327 + OHPLBJKB_04207 0.26 -1.0 4,425,659 + OHPLBJKB_04207 0.41 +0.8 4,425,659 + OHPLBJKB_04207 0.41 -0.7 4,425,659 + OHPLBJKB_04207 0.41 +0.3 4,425,660 - OHPLBJKB_04207 0.41 -0.6 4,425,660 - OHPLBJKB_04207 0.41 -1.5 4,425,663 + OHPLBJKB_04207 0.41 +0.7 4,425,663 + OHPLBJKB_04207 0.41 +0.6 4,425,664 - OHPLBJKB_04207 0.41 -0.4 4,425,797 - OHPLBJKB_04207 0.47 +1.6 4,425,797 - OHPLBJKB_04207 0.47 +0.1 4,425,797 - OHPLBJKB_04207 0.47 +0.4 4,425,797 - OHPLBJKB_04207 0.47 +0.1 4,425,957 + OHPLBJKB_04207 0.54 -0.7 4,425,958 - OHPLBJKB_04207 0.54 +0.1 4,425,997 - OHPLBJKB_04207 0.56 +0.2 4,426,045 + OHPLBJKB_04207 0.58 -1.5 4,426,045 + OHPLBJKB_04207 0.58 +0.7 4,426,149 + OHPLBJKB_04207 0.63 +0.2 4,426,272 + OHPLBJKB_04207 0.69 -1.1 4,426,273 - OHPLBJKB_04207 0.69 +0.6 4,426,273 - OHPLBJKB_04207 0.69 +1.2 4,426,273 - OHPLBJKB_04207 0.69 -0.3 4,426,273 - OHPLBJKB_04207 0.69 -1.2 4,426,273 - OHPLBJKB_04207 0.69 +0.7 4,426,382 + OHPLBJKB_04207 0.74 -1.3 4,426,383 - OHPLBJKB_04207 0.74 -1.1 4,426,541 + OHPLBJKB_04207 0.81 -0.6 4,426,542 - OHPLBJKB_04207 0.81 +0.4 4,426,543 + OHPLBJKB_04207 0.81 -1.9 4,426,543 + OHPLBJKB_04207 0.81 -0.1 4,426,543 + OHPLBJKB_04207 0.81 -0.8 4,426,543 + OHPLBJKB_04207 0.81 +2.9 4,426,543 + OHPLBJKB_04207 0.81 -0.8 4,426,543 + OHPLBJKB_04207 0.81 -1.1 4,426,544 - OHPLBJKB_04207 0.81 +0.2 4,426,561 + OHPLBJKB_04207 0.82 -0.3 4,426,561 + OHPLBJKB_04207 0.82 -3.4 4,426,562 - OHPLBJKB_04207 0.82 -0.0 4,426,562 - OHPLBJKB_04207 0.82 -1.4 4,426,732 + OHPLBJKB_04207 0.90 -0.5 4,426,814 + -0.5 4,426,814 + -3.5 4,426,815 - -3.2 4,426,835 + -0.7 4,426,857 - +0.3 4,426,879 + +1.0 4,426,880 - +1.3 4,426,904 + +0.7 4,426,956 - +0.7 4,427,067 + +0.3 4,427,067 + +1.1 4,427,067 + +0.6 4,427,068 - +1.7 4,427,068 - -0.5 4,427,127 - OHPLBJKB_04208 0.14 -0.8 4,427,127 - OHPLBJKB_04208 0.14 -0.3 4,427,164 + OHPLBJKB_04208 0.17 -0.4 4,427,164 + OHPLBJKB_04208 0.17 -0.4 4,427,164 + OHPLBJKB_04208 0.17 +0.1 4,427,165 - OHPLBJKB_04208 0.17 +0.3 4,427,165 - OHPLBJKB_04208 0.17 +1.6 4,427,200 - OHPLBJKB_04208 0.20 +0.6 4,427,200 - OHPLBJKB_04208 0.20 -1.1 4,427,281 + OHPLBJKB_04208 0.27 -0.5 4,427,326 + OHPLBJKB_04208 0.31 -1.8 4,427,434 + OHPLBJKB_04208 0.40 -0.0 4,427,578 + OHPLBJKB_04208 0.52 +1.4 4,427,742 + OHPLBJKB_04208 0.67 -0.5 4,427,742 + OHPLBJKB_04208 0.67 -0.1 4,427,742 + OHPLBJKB_04208 0.67 +0.3 4,427,743 - OHPLBJKB_04208 0.67 -2.0 4,427,749 + OHPLBJKB_04208 0.67 -1.4
Or see this region's nucleotide sequence