Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00225

Experiment: Phage Lil 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00223 and OHPLBJKB_00224 overlap by 4 nucleotidesOHPLBJKB_00224 and OHPLBJKB_00225 overlap by 1 nucleotidesOHPLBJKB_00225 and OHPLBJKB_00226 overlap by 4 nucleotidesOHPLBJKB_00226 and OHPLBJKB_00227 overlap by 1 nucleotides OHPLBJKB_00223: OHPLBJKB_00223 - Nickel import ATP-binding protein NikE, at 246,049 to 246,855 _00223 OHPLBJKB_00224: OHPLBJKB_00224 - Nickel import ATP-binding protein NikD, at 246,852 to 247,616 _00224 OHPLBJKB_00225: OHPLBJKB_00225 - Nickel transport system permease protein NikC, at 247,616 to 248,449 _00225 OHPLBJKB_00226: OHPLBJKB_00226 - Nickel transport system permease protein NikB, at 248,446 to 249,390 _00226 OHPLBJKB_00227: OHPLBJKB_00227 - Nickel-binding periplasmic protein, at 249,390 to 250,964 _00227 Position (kb) 247 248 249Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 246.648 kb on + strand, within OHPLBJKB_00223at 246.649 kb on - strand, within OHPLBJKB_00223at 246.651 kb on + strand, within OHPLBJKB_00223at 246.674 kb on - strand, within OHPLBJKB_00223at 246.674 kb on - strand, within OHPLBJKB_00223at 246.680 kb on - strand, within OHPLBJKB_00223at 246.819 kb on - strandat 246.843 kb on + strandat 246.847 kb on + strandat 246.847 kb on + strandat 246.847 kb on + strandat 246.847 kb on + strandat 246.847 kb on + strandat 246.848 kb on - strandat 246.848 kb on - strandat 246.848 kb on - strandat 246.848 kb on - strandat 246.874 kb on + strandat 246.875 kb on - strandat 246.875 kb on - strandat 246.914 kb on + strandat 246.915 kb on - strandat 246.915 kb on - strandat 246.915 kb on - strandat 246.915 kb on - strandat 246.930 kb on - strand, within OHPLBJKB_00224at 246.930 kb on - strand, within OHPLBJKB_00224at 246.942 kb on + strand, within OHPLBJKB_00224at 246.943 kb on - strand, within OHPLBJKB_00224at 246.943 kb on - strand, within OHPLBJKB_00224at 246.965 kb on + strand, within OHPLBJKB_00224at 246.966 kb on - strand, within OHPLBJKB_00224at 247.059 kb on - strand, within OHPLBJKB_00224at 247.095 kb on + strand, within OHPLBJKB_00224at 247.095 kb on + strand, within OHPLBJKB_00224at 247.251 kb on + strand, within OHPLBJKB_00224at 247.252 kb on - strand, within OHPLBJKB_00224at 247.341 kb on - strand, within OHPLBJKB_00224at 247.592 kb on + strandat 247.592 kb on + strandat 247.592 kb on + strandat 247.593 kb on - strandat 247.593 kb on - strandat 247.593 kb on - strandat 247.593 kb on - strandat 247.596 kb on + strandat 247.596 kb on + strandat 247.596 kb on + strandat 247.597 kb on - strandat 247.617 kb on + strandat 247.618 kb on - strandat 247.618 kb on - strandat 247.747 kb on + strand, within OHPLBJKB_00225at 247.748 kb on - strand, within OHPLBJKB_00225at 247.748 kb on - strand, within OHPLBJKB_00225at 247.748 kb on - strand, within OHPLBJKB_00225at 247.749 kb on + strand, within OHPLBJKB_00225at 247.749 kb on + strand, within OHPLBJKB_00225at 247.749 kb on + strand, within OHPLBJKB_00225at 247.843 kb on + strand, within OHPLBJKB_00225at 247.843 kb on + strand, within OHPLBJKB_00225at 247.844 kb on - strand, within OHPLBJKB_00225at 248.004 kb on + strand, within OHPLBJKB_00225at 248.005 kb on - strand, within OHPLBJKB_00225at 248.039 kb on + strand, within OHPLBJKB_00225at 248.039 kb on + strand, within OHPLBJKB_00225at 248.039 kb on + strand, within OHPLBJKB_00225at 248.039 kb on + strand, within OHPLBJKB_00225at 248.039 kb on + strand, within OHPLBJKB_00225at 248.040 kb on - strand, within OHPLBJKB_00225at 248.040 kb on - strand, within OHPLBJKB_00225at 248.040 kb on - strand, within OHPLBJKB_00225at 248.040 kb on - strand, within OHPLBJKB_00225at 248.107 kb on + strand, within OHPLBJKB_00225at 248.108 kb on - strand, within OHPLBJKB_00225at 248.108 kb on - strand, within OHPLBJKB_00225at 248.108 kb on - strand, within OHPLBJKB_00225at 248.187 kb on - strand, within OHPLBJKB_00225at 248.264 kb on - strand, within OHPLBJKB_00225at 248.274 kb on - strand, within OHPLBJKB_00225at 248.274 kb on - strand, within OHPLBJKB_00225at 248.274 kb on - strand, within OHPLBJKB_00225at 248.518 kb on - strandat 248.551 kb on - strand, within OHPLBJKB_00226at 248.796 kb on + strand, within OHPLBJKB_00226at 248.797 kb on - strand, within OHPLBJKB_00226at 248.797 kb on - strand, within OHPLBJKB_00226at 248.835 kb on + strand, within OHPLBJKB_00226at 248.835 kb on + strand, within OHPLBJKB_00226at 248.910 kb on - strand, within OHPLBJKB_00226at 249.058 kb on + strand, within OHPLBJKB_00226at 249.058 kb on + strand, within OHPLBJKB_00226at 249.061 kb on + strand, within OHPLBJKB_00226at 249.147 kb on + strand, within OHPLBJKB_00226at 249.197 kb on + strand, within OHPLBJKB_00226at 249.197 kb on + strand, within OHPLBJKB_00226at 249.197 kb on + strand, within OHPLBJKB_00226at 249.197 kb on + strand, within OHPLBJKB_00226at 249.197 kb on + strand, within OHPLBJKB_00226at 249.198 kb on - strand, within OHPLBJKB_00226at 249.198 kb on - strand, within OHPLBJKB_00226at 249.198 kb on - strand, within OHPLBJKB_00226at 249.198 kb on - strand, within OHPLBJKB_00226at 249.264 kb on + strand, within OHPLBJKB_00226at 249.373 kb on + strandat 249.374 kb on - strandat 249.376 kb on + strandat 249.376 kb on + strandat 249.376 kb on + strandat 249.376 kb on + strandat 249.376 kb on + strandat 249.376 kb on + strandat 249.377 kb on - strandat 249.377 kb on - strandat 249.377 kb on - strandat 249.377 kb on - strandat 249.380 kb on + strandat 249.381 kb on - strandat 249.381 kb on - strandat 249.391 kb on + strandat 249.408 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phage Lil 2
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246,648 + OHPLBJKB_00223 0.74 +0.1
246,649 - OHPLBJKB_00223 0.74 +0.6
246,651 + OHPLBJKB_00223 0.75 -2.1
246,674 - OHPLBJKB_00223 0.77 +1.3
246,674 - OHPLBJKB_00223 0.77 +0.1
246,680 - OHPLBJKB_00223 0.78 +0.2
246,819 - -1.1
246,843 + +1.1
246,847 + -0.2
246,847 + +0.2
246,847 + +1.0
246,847 + +1.2
246,847 + +0.1
246,848 - -0.5
246,848 - +1.2
246,848 - -0.4
246,848 - -0.6
246,874 + +2.4
246,875 - +0.3
246,875 - -0.9
246,914 + +0.0
246,915 - +0.8
246,915 - +0.7
246,915 - -0.5
246,915 - +0.7
246,930 - OHPLBJKB_00224 0.10 -2.0
246,930 - OHPLBJKB_00224 0.10 +0.8
246,942 + OHPLBJKB_00224 0.12 -1.0
246,943 - OHPLBJKB_00224 0.12 -0.4
246,943 - OHPLBJKB_00224 0.12 -2.9
246,965 + OHPLBJKB_00224 0.15 +0.2
246,966 - OHPLBJKB_00224 0.15 +0.3
247,059 - OHPLBJKB_00224 0.27 +0.5
247,095 + OHPLBJKB_00224 0.32 -0.5
247,095 + OHPLBJKB_00224 0.32 +0.4
247,251 + OHPLBJKB_00224 0.52 +1.1
247,252 - OHPLBJKB_00224 0.52 +0.7
247,341 - OHPLBJKB_00224 0.64 +0.2
247,592 + +0.6
247,592 + +0.3
247,592 + +0.9
247,593 - -0.8
247,593 - -0.5
247,593 - -0.6
247,593 - +0.2
247,596 + -0.7
247,596 + -0.8
247,596 + -0.1
247,597 - -1.3
247,617 + +0.8
247,618 - +2.2
247,618 - -3.2
247,747 + OHPLBJKB_00225 0.16 -1.0
247,748 - OHPLBJKB_00225 0.16 -0.4
247,748 - OHPLBJKB_00225 0.16 -0.6
247,748 - OHPLBJKB_00225 0.16 +0.5
247,749 + OHPLBJKB_00225 0.16 +0.4
247,749 + OHPLBJKB_00225 0.16 +2.2
247,749 + OHPLBJKB_00225 0.16 +0.2
247,843 + OHPLBJKB_00225 0.27 -1.4
247,843 + OHPLBJKB_00225 0.27 -0.9
247,844 - OHPLBJKB_00225 0.27 +1.2
248,004 + OHPLBJKB_00225 0.47 +0.7
248,005 - OHPLBJKB_00225 0.47 -0.1
248,039 + OHPLBJKB_00225 0.51 -0.6
248,039 + OHPLBJKB_00225 0.51 -0.1
248,039 + OHPLBJKB_00225 0.51 -0.4
248,039 + OHPLBJKB_00225 0.51 +1.0
248,039 + OHPLBJKB_00225 0.51 -0.4
248,040 - OHPLBJKB_00225 0.51 -2.5
248,040 - OHPLBJKB_00225 0.51 -0.2
248,040 - OHPLBJKB_00225 0.51 -0.1
248,040 - OHPLBJKB_00225 0.51 -0.4
248,107 + OHPLBJKB_00225 0.59 -0.3
248,108 - OHPLBJKB_00225 0.59 -0.3
248,108 - OHPLBJKB_00225 0.59 -0.6
248,108 - OHPLBJKB_00225 0.59 -0.5
248,187 - OHPLBJKB_00225 0.68 -0.9
248,264 - OHPLBJKB_00225 0.78 -0.6
248,274 - OHPLBJKB_00225 0.79 -0.6
248,274 - OHPLBJKB_00225 0.79 +2.2
248,274 - OHPLBJKB_00225 0.79 +0.9
248,518 - +0.2
248,551 - OHPLBJKB_00226 0.11 +0.6
248,796 + OHPLBJKB_00226 0.37 -0.4
248,797 - OHPLBJKB_00226 0.37 +0.5
248,797 - OHPLBJKB_00226 0.37 +0.8
248,835 + OHPLBJKB_00226 0.41 +0.2
248,835 + OHPLBJKB_00226 0.41 -0.1
248,910 - OHPLBJKB_00226 0.49 -0.3
249,058 + OHPLBJKB_00226 0.65 -0.1
249,058 + OHPLBJKB_00226 0.65 +1.2
249,061 + OHPLBJKB_00226 0.65 -0.6
249,147 + OHPLBJKB_00226 0.74 -0.2
249,197 + OHPLBJKB_00226 0.79 -0.8
249,197 + OHPLBJKB_00226 0.79 -2.0
249,197 + OHPLBJKB_00226 0.79 -1.1
249,197 + OHPLBJKB_00226 0.79 -1.4
249,197 + OHPLBJKB_00226 0.79 +0.4
249,198 - OHPLBJKB_00226 0.80 +1.2
249,198 - OHPLBJKB_00226 0.80 +0.7
249,198 - OHPLBJKB_00226 0.80 -0.9
249,198 - OHPLBJKB_00226 0.80 -0.5
249,264 + OHPLBJKB_00226 0.87 +0.1
249,373 + +0.5
249,374 - -0.3
249,376 + -1.5
249,376 + -1.0
249,376 + +1.2
249,376 + -1.5
249,376 + +0.5
249,376 + +1.1
249,377 - -0.2
249,377 - +0.2
249,377 - +0.1
249,377 - +0.2
249,380 + +1.0
249,381 - +1.0
249,381 - -0.1
249,391 + +0.2
249,408 - -0.3

Or see this region's nucleotide sequence