Experiment: Phage Lil 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00208 and OHPLBJKB_00209 are separated by 390 nucleotides OHPLBJKB_00209 and OHPLBJKB_00210 are separated by 244 nucleotides OHPLBJKB_00210 and OHPLBJKB_00211 are separated by 231 nucleotides
OHPLBJKB_00208: OHPLBJKB_00208 - Universal stress protein A, at 227,846 to 228,280
_00208
OHPLBJKB_00209: OHPLBJKB_00209 - Universal stress protein B, at 228,671 to 229,006
_00209
OHPLBJKB_00210: OHPLBJKB_00210 - Low-affinity inorganic phosphate transporter 1, at 229,251 to 230,750
_00210
OHPLBJKB_00211: OHPLBJKB_00211 - hypothetical protein, at 230,982 to 232,184
_00211
Position (kb) 229
230
231 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 228.271 kb on + strand at 228.271 kb on + strand at 228.272 kb on - strand at 228.273 kb on + strand at 228.274 kb on - strand at 228.274 kb on - strand at 228.280 kb on + strand at 228.286 kb on + strand at 228.298 kb on - strand at 228.339 kb on + strand at 228.362 kb on + strand at 228.362 kb on + strand at 228.362 kb on + strand at 228.362 kb on + strand at 228.362 kb on + strand at 228.363 kb on - strand at 228.402 kb on - strand at 228.402 kb on - strand at 228.413 kb on + strand at 228.413 kb on + strand at 228.414 kb on - strand at 228.414 kb on - strand at 228.414 kb on - strand at 228.420 kb on + strand at 228.421 kb on - strand at 228.455 kb on - strand at 228.462 kb on - strand at 228.466 kb on - strand at 228.486 kb on + strand at 228.486 kb on + strand at 228.486 kb on + strand at 228.486 kb on + strand at 228.486 kb on + strand at 228.486 kb on + strand at 228.486 kb on + strand at 228.486 kb on + strand at 228.486 kb on + strand at 228.486 kb on + strand at 228.486 kb on + strand at 228.486 kb on + strand at 228.486 kb on + strand at 228.487 kb on - strand at 228.487 kb on - strand at 228.487 kb on - strand at 228.488 kb on + strand at 228.488 kb on + strand at 228.488 kb on + strand at 228.489 kb on - strand at 228.495 kb on - strand at 228.533 kb on + strand at 228.533 kb on + strand at 228.533 kb on + strand at 228.534 kb on - strand at 228.538 kb on + strand at 228.538 kb on + strand at 228.538 kb on + strand at 228.538 kb on + strand at 228.538 kb on + strand at 228.538 kb on + strand at 228.538 kb on + strand at 228.538 kb on + strand at 228.538 kb on + strand at 228.538 kb on + strand at 228.538 kb on + strand at 228.538 kb on + strand at 228.538 kb on + strand at 228.538 kb on + strand at 228.539 kb on - strand at 228.539 kb on - strand at 228.539 kb on - strand at 228.539 kb on - strand at 228.539 kb on - strand at 228.539 kb on - strand at 228.539 kb on - strand at 228.539 kb on - strand at 228.539 kb on - strand at 228.539 kb on - strand at 228.542 kb on + strand at 228.542 kb on + strand at 228.542 kb on + strand at 228.542 kb on + strand at 228.542 kb on + strand at 228.542 kb on + strand at 228.542 kb on + strand at 228.543 kb on - strand at 228.543 kb on - strand at 228.543 kb on - strand at 228.543 kb on - strand at 228.598 kb on + strand at 228.670 kb on + strand at 228.670 kb on + strand at 228.670 kb on + strand at 228.670 kb on + strand at 228.671 kb on - strand at 228.671 kb on - strand at 228.671 kb on - strand at 228.671 kb on - strand at 228.671 kb on - strand at 228.671 kb on - strand at 228.671 kb on - strand at 228.671 kb on - strand at 228.690 kb on + strand at 228.691 kb on - strand at 228.702 kb on + strand at 228.702 kb on + strand at 228.734 kb on + strand, within OHPLBJKB_00209 at 228.766 kb on - strand, within OHPLBJKB_00209 at 228.766 kb on - strand, within OHPLBJKB_00209 at 228.791 kb on + strand, within OHPLBJKB_00209 at 228.792 kb on - strand, within OHPLBJKB_00209 at 228.797 kb on + strand, within OHPLBJKB_00209 at 228.797 kb on + strand, within OHPLBJKB_00209 at 228.797 kb on + strand, within OHPLBJKB_00209 at 228.797 kb on + strand, within OHPLBJKB_00209 at 228.797 kb on + strand, within OHPLBJKB_00209 at 228.798 kb on - strand, within OHPLBJKB_00209 at 228.798 kb on - strand, within OHPLBJKB_00209 at 228.864 kb on - strand, within OHPLBJKB_00209 at 228.864 kb on - strand, within OHPLBJKB_00209 at 228.864 kb on - strand, within OHPLBJKB_00209 at 228.864 kb on - strand, within OHPLBJKB_00209 at 228.864 kb on - strand, within OHPLBJKB_00209 at 228.865 kb on + strand, within OHPLBJKB_00209 at 228.865 kb on + strand, within OHPLBJKB_00209 at 228.865 kb on + strand, within OHPLBJKB_00209 at 228.865 kb on + strand, within OHPLBJKB_00209 at 228.865 kb on + strand, within OHPLBJKB_00209 at 228.866 kb on - strand, within OHPLBJKB_00209 at 228.866 kb on - strand, within OHPLBJKB_00209 at 228.866 kb on - strand, within OHPLBJKB_00209 at 228.866 kb on - strand, within OHPLBJKB_00209 at 228.866 kb on - strand, within OHPLBJKB_00209 at 228.866 kb on - strand, within OHPLBJKB_00209 at 228.869 kb on + strand, within OHPLBJKB_00209 at 228.869 kb on + strand, within OHPLBJKB_00209 at 228.869 kb on + strand, within OHPLBJKB_00209 at 228.869 kb on + strand, within OHPLBJKB_00209 at 228.869 kb on + strand, within OHPLBJKB_00209 at 228.869 kb on + strand, within OHPLBJKB_00209 at 228.869 kb on + strand, within OHPLBJKB_00209 at 228.869 kb on + strand, within OHPLBJKB_00209 at 228.870 kb on - strand, within OHPLBJKB_00209 at 228.870 kb on - strand, within OHPLBJKB_00209 at 228.870 kb on - strand, within OHPLBJKB_00209 at 228.870 kb on - strand, within OHPLBJKB_00209 at 228.870 kb on - strand, within OHPLBJKB_00209 at 228.870 kb on - strand, within OHPLBJKB_00209 at 228.870 kb on - strand, within OHPLBJKB_00209 at 228.870 kb on - strand, within OHPLBJKB_00209 at 228.941 kb on - strand, within OHPLBJKB_00209 at 228.941 kb on - strand, within OHPLBJKB_00209 at 229.004 kb on + strand at 229.020 kb on - strand at 229.027 kb on + strand at 229.027 kb on + strand at 229.027 kb on + strand at 229.028 kb on - strand at 229.028 kb on - strand at 229.028 kb on - strand at 229.029 kb on + strand at 229.071 kb on - strand at 229.111 kb on + strand at 229.115 kb on + strand at 229.198 kb on + strand at 229.198 kb on + strand at 229.246 kb on + strand at 229.246 kb on + strand at 229.314 kb on - strand at 229.334 kb on + strand at 229.356 kb on + strand at 229.371 kb on + strand at 229.372 kb on - strand at 229.404 kb on + strand, within OHPLBJKB_00210 at 229.405 kb on - strand, within OHPLBJKB_00210 at 229.405 kb on - strand, within OHPLBJKB_00210 at 229.413 kb on - strand, within OHPLBJKB_00210 at 229.435 kb on + strand, within OHPLBJKB_00210 at 229.435 kb on + strand, within OHPLBJKB_00210 at 229.435 kb on + strand, within OHPLBJKB_00210 at 229.436 kb on - strand, within OHPLBJKB_00210 at 229.436 kb on - strand, within OHPLBJKB_00210 at 229.436 kb on - strand, within OHPLBJKB_00210 at 229.492 kb on + strand, within OHPLBJKB_00210 at 229.493 kb on - strand, within OHPLBJKB_00210 at 229.610 kb on - strand, within OHPLBJKB_00210 at 229.622 kb on + strand, within OHPLBJKB_00210 at 229.721 kb on + strand, within OHPLBJKB_00210 at 229.722 kb on - strand, within OHPLBJKB_00210 at 229.722 kb on - strand, within OHPLBJKB_00210 at 229.740 kb on - strand, within OHPLBJKB_00210 at 229.881 kb on + strand, within OHPLBJKB_00210 at 229.881 kb on + strand, within OHPLBJKB_00210 at 229.934 kb on - strand, within OHPLBJKB_00210 at 229.994 kb on + strand, within OHPLBJKB_00210 at 230.040 kb on - strand, within OHPLBJKB_00210 at 230.040 kb on - strand, within OHPLBJKB_00210 at 230.385 kb on - strand, within OHPLBJKB_00210 at 230.403 kb on + strand, within OHPLBJKB_00210 at 230.414 kb on - strand, within OHPLBJKB_00210 at 230.414 kb on - strand, within OHPLBJKB_00210 at 230.454 kb on - strand, within OHPLBJKB_00210 at 230.454 kb on - strand, within OHPLBJKB_00210 at 230.454 kb on - strand, within OHPLBJKB_00210 at 230.492 kb on + strand, within OHPLBJKB_00210 at 230.620 kb on + strand at 230.620 kb on + strand at 230.620 kb on + strand at 230.620 kb on + strand at 230.621 kb on - strand at 230.621 kb on - strand at 230.706 kb on + strand at 230.707 kb on - strand at 230.745 kb on + strand at 230.745 kb on + strand at 230.745 kb on + strand at 230.745 kb on + strand at 230.745 kb on + strand at 230.746 kb on - strand at 230.746 kb on - strand at 230.750 kb on + strand at 230.751 kb on - strand at 230.791 kb on - strand at 230.825 kb on - strand at 230.884 kb on + strand at 230.967 kb on + strand at 231.002 kb on + strand at 231.005 kb on + strand at 231.006 kb on - strand at 231.110 kb on + strand, within OHPLBJKB_00211 at 231.110 kb on + strand, within OHPLBJKB_00211 at 231.111 kb on - strand, within OHPLBJKB_00211 at 231.147 kb on + strand, within OHPLBJKB_00211 at 231.147 kb on + strand, within OHPLBJKB_00211 at 231.147 kb on + strand, within OHPLBJKB_00211 at 231.148 kb on - strand, within OHPLBJKB_00211 at 231.166 kb on - strand, within OHPLBJKB_00211 at 231.166 kb on - strand, within OHPLBJKB_00211 at 231.212 kb on + strand, within OHPLBJKB_00211 at 231.349 kb on + strand, within OHPLBJKB_00211 at 231.349 kb on + strand, within OHPLBJKB_00211 at 231.349 kb on + strand, within OHPLBJKB_00211 at 231.349 kb on + strand, within OHPLBJKB_00211 at 231.349 kb on + strand, within OHPLBJKB_00211 at 231.349 kb on + strand, within OHPLBJKB_00211 at 231.350 kb on - strand, within OHPLBJKB_00211 at 231.350 kb on - strand, within OHPLBJKB_00211 at 231.350 kb on - strand, within OHPLBJKB_00211 at 231.501 kb on + strand, within OHPLBJKB_00211 at 231.503 kb on + strand, within OHPLBJKB_00211 at 231.504 kb on - strand, within OHPLBJKB_00211 at 231.504 kb on - strand, within OHPLBJKB_00211 at 231.572 kb on + strand, within OHPLBJKB_00211 at 231.572 kb on + strand, within OHPLBJKB_00211 at 231.573 kb on - strand, within OHPLBJKB_00211 at 231.573 kb on - strand, within OHPLBJKB_00211 at 231.592 kb on + strand, within OHPLBJKB_00211 at 231.593 kb on - strand, within OHPLBJKB_00211 at 231.664 kb on + strand, within OHPLBJKB_00211 at 231.665 kb on - strand, within OHPLBJKB_00211 at 231.665 kb on - strand, within OHPLBJKB_00211 at 231.743 kb on + strand, within OHPLBJKB_00211
Per-strain Table
Position Strand Gene LocusTag Fraction Phage Lil 2 remove 228,271 + -0.1 228,271 + +0.2 228,272 - +1.0 228,273 + -0.5 228,274 - +1.0 228,274 - +0.4 228,280 + -0.0 228,286 + +0.7 228,298 - +0.4 228,339 + -0.5 228,362 + -0.6 228,362 + +0.4 228,362 + +0.3 228,362 + -0.0 228,362 + -0.7 228,363 - +0.0 228,402 - -1.1 228,402 - -1.2 228,413 + -0.3 228,413 + +0.6 228,414 - -1.7 228,414 - -0.4 228,414 - -1.0 228,420 + +0.6 228,421 - +0.3 228,455 - +0.1 228,462 - -0.3 228,466 - -0.2 228,486 + +0.4 228,486 + +0.1 228,486 + +0.7 228,486 + -0.4 228,486 + +0.3 228,486 + -0.2 228,486 + -0.0 228,486 + +0.5 228,486 + +0.2 228,486 + -1.7 228,486 + +0.2 228,486 + -0.9 228,486 + +1.2 228,487 - -0.9 228,487 - +0.2 228,487 - +1.2 228,488 + -0.5 228,488 + -0.5 228,488 + +0.3 228,489 - -0.2 228,495 - -1.3 228,533 + -0.1 228,533 + +0.4 228,533 + -0.6 228,534 - -1.3 228,538 + -0.4 228,538 + -0.5 228,538 + -0.2 228,538 + +2.2 228,538 + +0.3 228,538 + -0.5 228,538 + +0.5 228,538 + -0.4 228,538 + -0.3 228,538 + -0.3 228,538 + +0.7 228,538 + -0.3 228,538 + +0.9 228,538 + -1.2 228,539 - -0.1 228,539 - -1.2 228,539 - +0.4 228,539 - -0.0 228,539 - -0.3 228,539 - -0.5 228,539 - +0.1 228,539 - -0.4 228,539 - +0.5 228,539 - -2.0 228,542 + -0.3 228,542 + -0.2 228,542 + +0.6 228,542 + -0.5 228,542 + +1.4 228,542 + -1.0 228,542 + -1.2 228,543 - +0.5 228,543 - +0.5 228,543 - +1.7 228,543 - -2.1 228,598 + +0.2 228,670 + +0.2 228,670 + +0.3 228,670 + -2.8 228,670 + -0.3 228,671 - +1.4 228,671 - +0.4 228,671 - +0.8 228,671 - -0.2 228,671 - -0.2 228,671 - -1.1 228,671 - -0.5 228,671 - -0.9 228,690 + +0.3 228,691 - +0.2 228,702 + -0.0 228,702 + -2.0 228,734 + OHPLBJKB_00209 0.19 -0.9 228,766 - OHPLBJKB_00209 0.28 +1.2 228,766 - OHPLBJKB_00209 0.28 -1.4 228,791 + OHPLBJKB_00209 0.36 +0.3 228,792 - OHPLBJKB_00209 0.36 -1.8 228,797 + OHPLBJKB_00209 0.38 -1.9 228,797 + OHPLBJKB_00209 0.38 -0.5 228,797 + OHPLBJKB_00209 0.38 +0.1 228,797 + OHPLBJKB_00209 0.38 -0.0 228,797 + OHPLBJKB_00209 0.38 -1.8 228,798 - OHPLBJKB_00209 0.38 +0.5 228,798 - OHPLBJKB_00209 0.38 +0.8 228,864 - OHPLBJKB_00209 0.57 +0.5 228,864 - OHPLBJKB_00209 0.57 -0.2 228,864 - OHPLBJKB_00209 0.57 +0.2 228,864 - OHPLBJKB_00209 0.57 -1.6 228,864 - OHPLBJKB_00209 0.57 -0.2 228,865 + OHPLBJKB_00209 0.58 -0.3 228,865 + OHPLBJKB_00209 0.58 -0.3 228,865 + OHPLBJKB_00209 0.58 -0.5 228,865 + OHPLBJKB_00209 0.58 -1.0 228,865 + OHPLBJKB_00209 0.58 +0.5 228,866 - OHPLBJKB_00209 0.58 +1.2 228,866 - OHPLBJKB_00209 0.58 -0.2 228,866 - OHPLBJKB_00209 0.58 +0.7 228,866 - OHPLBJKB_00209 0.58 -0.8 228,866 - OHPLBJKB_00209 0.58 -0.3 228,866 - OHPLBJKB_00209 0.58 -1.0 228,869 + OHPLBJKB_00209 0.59 +1.3 228,869 + OHPLBJKB_00209 0.59 -1.3 228,869 + OHPLBJKB_00209 0.59 +0.7 228,869 + OHPLBJKB_00209 0.59 -1.4 228,869 + OHPLBJKB_00209 0.59 -1.7 228,869 + OHPLBJKB_00209 0.59 -0.3 228,869 + OHPLBJKB_00209 0.59 -1.1 228,869 + OHPLBJKB_00209 0.59 -0.6 228,870 - OHPLBJKB_00209 0.59 +0.4 228,870 - OHPLBJKB_00209 0.59 -0.1 228,870 - OHPLBJKB_00209 0.59 +0.0 228,870 - OHPLBJKB_00209 0.59 +0.5 228,870 - OHPLBJKB_00209 0.59 -0.6 228,870 - OHPLBJKB_00209 0.59 +0.8 228,870 - OHPLBJKB_00209 0.59 -1.2 228,870 - OHPLBJKB_00209 0.59 +0.2 228,941 - OHPLBJKB_00209 0.80 -2.6 228,941 - OHPLBJKB_00209 0.80 -0.4 229,004 + -0.2 229,020 - +0.5 229,027 + +0.1 229,027 + -0.7 229,027 + +1.1 229,028 - +1.2 229,028 - -0.5 229,028 - +0.7 229,029 + -0.2 229,071 - -0.4 229,111 + +0.1 229,115 + +1.2 229,198 + -0.4 229,198 + +0.7 229,246 + -0.1 229,246 + -0.6 229,314 - -0.1 229,334 + +0.7 229,356 + -0.1 229,371 + +2.2 229,372 - -0.8 229,404 + OHPLBJKB_00210 0.10 -0.3 229,405 - OHPLBJKB_00210 0.10 +1.2 229,405 - OHPLBJKB_00210 0.10 +0.2 229,413 - OHPLBJKB_00210 0.11 -1.1 229,435 + OHPLBJKB_00210 0.12 -1.4 229,435 + OHPLBJKB_00210 0.12 -0.4 229,435 + OHPLBJKB_00210 0.12 -0.1 229,436 - OHPLBJKB_00210 0.12 -1.5 229,436 - OHPLBJKB_00210 0.12 -1.4 229,436 - OHPLBJKB_00210 0.12 +0.2 229,492 + OHPLBJKB_00210 0.16 -0.8 229,493 - OHPLBJKB_00210 0.16 -0.4 229,610 - OHPLBJKB_00210 0.24 +1.2 229,622 + OHPLBJKB_00210 0.25 -0.6 229,721 + OHPLBJKB_00210 0.31 -0.8 229,722 - OHPLBJKB_00210 0.31 -0.9 229,722 - OHPLBJKB_00210 0.31 +0.6 229,740 - OHPLBJKB_00210 0.33 +1.6 229,881 + OHPLBJKB_00210 0.42 -0.2 229,881 + OHPLBJKB_00210 0.42 -1.4 229,934 - OHPLBJKB_00210 0.46 -0.9 229,994 + OHPLBJKB_00210 0.50 -0.1 230,040 - OHPLBJKB_00210 0.53 +1.4 230,040 - OHPLBJKB_00210 0.53 -1.5 230,385 - OHPLBJKB_00210 0.76 +0.9 230,403 + OHPLBJKB_00210 0.77 -1.2 230,414 - OHPLBJKB_00210 0.78 +0.2 230,414 - OHPLBJKB_00210 0.78 -1.8 230,454 - OHPLBJKB_00210 0.80 -1.7 230,454 - OHPLBJKB_00210 0.80 -1.2 230,454 - OHPLBJKB_00210 0.80 -0.4 230,492 + OHPLBJKB_00210 0.83 +0.6 230,620 + -1.4 230,620 + -1.1 230,620 + -0.6 230,620 + -1.5 230,621 - +1.2 230,621 - +1.2 230,706 + -0.9 230,707 - -1.8 230,745 + +0.2 230,745 + -0.9 230,745 + -2.2 230,745 + -0.1 230,745 + -0.1 230,746 - -0.1 230,746 - +1.1 230,750 + -0.8 230,751 - -0.8 230,791 - -0.8 230,825 - +1.8 230,884 + +1.1 230,967 + -1.0 231,002 + -0.1 231,005 + -1.3 231,006 - -0.4 231,110 + OHPLBJKB_00211 0.11 +0.1 231,110 + OHPLBJKB_00211 0.11 +0.8 231,111 - OHPLBJKB_00211 0.11 -0.5 231,147 + OHPLBJKB_00211 0.14 -1.1 231,147 + OHPLBJKB_00211 0.14 -0.6 231,147 + OHPLBJKB_00211 0.14 +0.4 231,148 - OHPLBJKB_00211 0.14 -2.1 231,166 - OHPLBJKB_00211 0.15 +0.2 231,166 - OHPLBJKB_00211 0.15 +0.5 231,212 + OHPLBJKB_00211 0.19 +0.4 231,349 + OHPLBJKB_00211 0.31 +0.6 231,349 + OHPLBJKB_00211 0.31 +5.7 231,349 + OHPLBJKB_00211 0.31 +0.6 231,349 + OHPLBJKB_00211 0.31 +0.5 231,349 + OHPLBJKB_00211 0.31 +0.1 231,349 + OHPLBJKB_00211 0.31 +0.3 231,350 - OHPLBJKB_00211 0.31 +0.5 231,350 - OHPLBJKB_00211 0.31 -0.6 231,350 - OHPLBJKB_00211 0.31 -1.4 231,501 + OHPLBJKB_00211 0.43 +1.6 231,503 + OHPLBJKB_00211 0.43 -0.4 231,504 - OHPLBJKB_00211 0.43 +1.3 231,504 - OHPLBJKB_00211 0.43 -0.2 231,572 + OHPLBJKB_00211 0.49 -0.4 231,572 + OHPLBJKB_00211 0.49 -0.4 231,573 - OHPLBJKB_00211 0.49 +0.4 231,573 - OHPLBJKB_00211 0.49 +0.5 231,592 + OHPLBJKB_00211 0.51 +0.9 231,593 - OHPLBJKB_00211 0.51 -1.2 231,664 + OHPLBJKB_00211 0.57 -0.1 231,665 - OHPLBJKB_00211 0.57 +1.1 231,665 - OHPLBJKB_00211 0.57 +0.6 231,743 + OHPLBJKB_00211 0.63 -1.4
Or see this region's nucleotide sequence