Experiment: JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flhD and flhC are separated by 2 nucleotides flhC and motA are separated by 126 nucleotides motA and motB overlap by 4 nucleotides motB and cheA are separated by 4 nucleotides
BNILDI_15330: flhD - flagellar transcriptional regulator FlhD, at 3,083,668 to 3,084,018
flhD
BNILDI_15335: flhC - flagellar transcriptional regulator FlhC, at 3,084,021 to 3,084,599
flhC
BNILDI_15340: motA - flagellar motor stator protein MotA, at 3,084,726 to 3,085,613
motA
BNILDI_15345: motB - flagellar motor protein MotB, at 3,085,610 to 3,086,536
motB
BNILDI_15350: cheA - chemotaxis protein CheA, at 3,086,541 to 3,088,505
cheA
Position (kb)
3084
3085
3086 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3083.780 kb on + strand, within flhD at 3083.780 kb on + strand, within flhD at 3083.892 kb on + strand, within flhD at 3083.980 kb on - strand, within flhD at 3084.124 kb on + strand, within flhC at 3084.125 kb on - strand, within flhC at 3084.150 kb on + strand, within flhC at 3084.152 kb on + strand, within flhC at 3084.213 kb on - strand, within flhC at 3084.251 kb on + strand, within flhC at 3084.252 kb on - strand, within flhC at 3084.322 kb on + strand, within flhC at 3084.325 kb on - strand, within flhC at 3084.325 kb on - strand, within flhC at 3084.325 kb on - strand, within flhC at 3084.325 kb on - strand, within flhC at 3084.497 kb on - strand, within flhC at 3084.586 kb on + strand at 3084.587 kb on - strand at 3084.641 kb on + strand at 3084.736 kb on + strand at 3084.737 kb on - strand at 3084.737 kb on - strand at 3084.739 kb on + strand at 3084.740 kb on - strand at 3084.740 kb on - strand at 3084.810 kb on + strand at 3084.810 kb on + strand at 3084.810 kb on + strand at 3084.810 kb on + strand at 3084.811 kb on - strand at 3084.948 kb on + strand, within motA at 3084.950 kb on + strand, within motA at 3084.950 kb on + strand, within motA at 3084.951 kb on - strand, within motA at 3085.136 kb on + strand, within motA at 3085.490 kb on + strand, within motA at 3085.697 kb on + strand at 3085.698 kb on - strand at 3085.841 kb on - strand, within motB at 3085.877 kb on + strand, within motB at 3086.013 kb on + strand, within motB at 3086.014 kb on - strand, within motB at 3086.052 kb on + strand, within motB at 3086.052 kb on + strand, within motB at 3086.056 kb on + strand, within motB at 3086.057 kb on - strand, within motB at 3086.120 kb on + strand, within motB at 3086.120 kb on + strand, within motB at 3086.121 kb on - strand, within motB at 3086.122 kb on + strand, within motB at 3086.123 kb on - strand, within motB at 3086.155 kb on - strand, within motB at 3086.232 kb on - strand, within motB at 3086.233 kb on + strand, within motB at 3086.233 kb on + strand, within motB at 3086.233 kb on + strand, within motB at 3086.233 kb on + strand, within motB at 3086.233 kb on + strand, within motB at 3086.233 kb on + strand, within motB at 3086.234 kb on - strand, within motB at 3086.234 kb on - strand, within motB at 3086.552 kb on + strand at 3086.554 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK32 remove 3,083,780 + flhD BNILDI_15330 0.32 -1.9 3,083,780 + flhD BNILDI_15330 0.32 -0.9 3,083,892 + flhD BNILDI_15330 0.64 -0.1 3,083,980 - flhD BNILDI_15330 0.89 +0.5 3,084,124 + flhC BNILDI_15335 0.18 +0.2 3,084,125 - flhC BNILDI_15335 0.18 -0.1 3,084,150 + flhC BNILDI_15335 0.22 +0.7 3,084,152 + flhC BNILDI_15335 0.23 +0.0 3,084,213 - flhC BNILDI_15335 0.33 -1.5 3,084,251 + flhC BNILDI_15335 0.40 +0.5 3,084,252 - flhC BNILDI_15335 0.40 -0.3 3,084,322 + flhC BNILDI_15335 0.52 -0.5 3,084,325 - flhC BNILDI_15335 0.53 -0.8 3,084,325 - flhC BNILDI_15335 0.53 +3.1 3,084,325 - flhC BNILDI_15335 0.53 +0.7 3,084,325 - flhC BNILDI_15335 0.53 -0.6 3,084,497 - flhC BNILDI_15335 0.82 -0.1 3,084,586 + +0.2 3,084,587 - +3.7 3,084,641 + +0.3 3,084,736 + -1.0 3,084,737 - +0.8 3,084,737 - -0.1 3,084,739 + -1.0 3,084,740 - +0.3 3,084,740 - +0.2 3,084,810 + +0.9 3,084,810 + -1.4 3,084,810 + -0.7 3,084,810 + +0.2 3,084,811 - -0.3 3,084,948 + motA BNILDI_15340 0.25 -0.9 3,084,950 + motA BNILDI_15340 0.25 -0.2 3,084,950 + motA BNILDI_15340 0.25 -2.2 3,084,951 - motA BNILDI_15340 0.25 -1.2 3,085,136 + motA BNILDI_15340 0.46 -0.3 3,085,490 + motA BNILDI_15340 0.86 -1.2 3,085,697 + +0.7 3,085,698 - +3.9 3,085,841 - motB BNILDI_15345 0.25 -1.4 3,085,877 + motB BNILDI_15345 0.29 -1.4 3,086,013 + motB BNILDI_15345 0.43 -0.1 3,086,014 - motB BNILDI_15345 0.44 +0.6 3,086,052 + motB BNILDI_15345 0.48 +0.3 3,086,052 + motB BNILDI_15345 0.48 -0.4 3,086,056 + motB BNILDI_15345 0.48 -0.7 3,086,057 - motB BNILDI_15345 0.48 -0.1 3,086,120 + motB BNILDI_15345 0.55 +0.3 3,086,120 + motB BNILDI_15345 0.55 -2.5 3,086,121 - motB BNILDI_15345 0.55 -0.6 3,086,122 + motB BNILDI_15345 0.55 +0.3 3,086,123 - motB BNILDI_15345 0.55 -1.4 3,086,155 - motB BNILDI_15345 0.59 -0.9 3,086,232 - motB BNILDI_15345 0.67 -0.8 3,086,233 + motB BNILDI_15345 0.67 +1.5 3,086,233 + motB BNILDI_15345 0.67 -0.1 3,086,233 + motB BNILDI_15345 0.67 -0.5 3,086,233 + motB BNILDI_15345 0.67 +0.2 3,086,233 + motB BNILDI_15345 0.67 +0.2 3,086,233 + motB BNILDI_15345 0.67 +0.9 3,086,234 - motB BNILDI_15345 0.67 +0.5 3,086,234 - motB BNILDI_15345 0.67 +1.2 3,086,552 + -0.2 3,086,554 + +1.0
Or see this region's nucleotide sequence