Experiment: JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt adeP and yieH are separated by 166 nucleotides yieH and cbrB are separated by 66 nucleotides cbrB and yieK are separated by 76 nucleotides
BNILDI_04445: adeP - adenine permease AdeP, at 877,750 to 879,087
adeP
BNILDI_04450: yieH - 6-phosphogluconate phosphatase, at 879,254 to 879,919
yieH
BNILDI_04455: cbrB - Inner membrane protein CbrB, at 879,986 to 880,459
cbrB
BNILDI_04460: yieK - glucosamine-6-phosphate deaminase, at 880,536 to 881,252
yieK
Position (kb) 879
880 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 878.308 kb on - strand, within adeP at 878.308 kb on - strand, within adeP at 878.360 kb on - strand, within adeP at 878.360 kb on - strand, within adeP at 878.409 kb on + strand, within adeP at 878.409 kb on + strand, within adeP at 878.411 kb on + strand, within adeP at 878.411 kb on + strand, within adeP at 878.644 kb on - strand, within adeP at 878.722 kb on + strand, within adeP at 878.779 kb on + strand, within adeP at 878.859 kb on + strand, within adeP at 878.859 kb on + strand, within adeP at 878.860 kb on - strand, within adeP at 878.860 kb on - strand, within adeP at 878.860 kb on - strand, within adeP at 878.862 kb on + strand, within adeP at 878.863 kb on - strand, within adeP at 878.889 kb on + strand, within adeP at 878.890 kb on - strand, within adeP at 878.958 kb on - strand at 878.958 kb on - strand at 879.088 kb on + strand at 879.089 kb on - strand at 879.093 kb on - strand at 879.187 kb on - strand at 879.329 kb on + strand, within yieH at 879.333 kb on + strand, within yieH at 879.334 kb on - strand, within yieH at 879.355 kb on + strand, within yieH at 879.356 kb on - strand, within yieH at 879.378 kb on + strand, within yieH at 879.445 kb on + strand, within yieH at 879.445 kb on + strand, within yieH at 879.445 kb on + strand, within yieH at 879.445 kb on + strand, within yieH at 879.446 kb on - strand, within yieH at 879.446 kb on - strand, within yieH at 879.573 kb on + strand, within yieH at 879.577 kb on + strand, within yieH at 879.578 kb on - strand, within yieH at 879.607 kb on + strand, within yieH at 879.608 kb on - strand, within yieH at 879.622 kb on + strand, within yieH at 879.623 kb on - strand, within yieH at 879.632 kb on + strand, within yieH at 879.633 kb on - strand, within yieH at 879.633 kb on - strand, within yieH at 879.723 kb on + strand, within yieH at 879.723 kb on + strand, within yieH at 879.723 kb on + strand, within yieH at 879.723 kb on + strand, within yieH at 879.723 kb on + strand, within yieH at 879.724 kb on - strand, within yieH at 879.730 kb on - strand, within yieH at 879.790 kb on + strand, within yieH at 879.804 kb on - strand, within yieH at 879.804 kb on - strand, within yieH at 879.804 kb on - strand, within yieH at 879.907 kb on + strand at 879.910 kb on + strand at 879.917 kb on + strand at 879.967 kb on + strand at 879.971 kb on + strand at 879.972 kb on - strand at 879.985 kb on + strand at 879.986 kb on - strand at 880.044 kb on + strand, within cbrB at 880.070 kb on + strand, within cbrB at 880.070 kb on + strand, within cbrB at 880.071 kb on - strand, within cbrB at 880.074 kb on + strand, within cbrB at 880.110 kb on + strand, within cbrB at 880.111 kb on - strand, within cbrB at 880.120 kb on - strand, within cbrB at 880.138 kb on - strand, within cbrB at 880.248 kb on + strand, within cbrB at 880.294 kb on + strand, within cbrB at 880.294 kb on + strand, within cbrB at 880.295 kb on - strand, within cbrB at 880.475 kb on + strand at 880.481 kb on + strand at 880.481 kb on + strand at 880.512 kb on - strand at 880.537 kb on + strand at 880.538 kb on - strand at 880.538 kb on - strand at 880.538 kb on - strand at 880.563 kb on - strand at 880.680 kb on + strand, within yieK at 880.681 kb on - strand, within yieK at 880.729 kb on + strand, within yieK at 880.729 kb on + strand, within yieK at 880.730 kb on - strand, within yieK at 880.730 kb on - strand, within yieK at 880.781 kb on + strand, within yieK at 880.781 kb on + strand, within yieK at 880.838 kb on + strand, within yieK
Per-strain Table
Position Strand Gene LocusTag Fraction JK32 remove 878,308 - adeP BNILDI_04445 0.42 -2.7 878,308 - adeP BNILDI_04445 0.42 -0.3 878,360 - adeP BNILDI_04445 0.46 +0.5 878,360 - adeP BNILDI_04445 0.46 +0.3 878,409 + adeP BNILDI_04445 0.49 -0.3 878,409 + adeP BNILDI_04445 0.49 -0.4 878,411 + adeP BNILDI_04445 0.49 -0.8 878,411 + adeP BNILDI_04445 0.49 -1.0 878,644 - adeP BNILDI_04445 0.67 -0.7 878,722 + adeP BNILDI_04445 0.73 +0.7 878,779 + adeP BNILDI_04445 0.77 +0.6 878,859 + adeP BNILDI_04445 0.83 -0.6 878,859 + adeP BNILDI_04445 0.83 -0.0 878,860 - adeP BNILDI_04445 0.83 +0.9 878,860 - adeP BNILDI_04445 0.83 -0.8 878,860 - adeP BNILDI_04445 0.83 +0.5 878,862 + adeP BNILDI_04445 0.83 -1.2 878,863 - adeP BNILDI_04445 0.83 -0.7 878,889 + adeP BNILDI_04445 0.85 -0.0 878,890 - adeP BNILDI_04445 0.85 +0.3 878,958 - -0.7 878,958 - -0.3 879,088 + -0.9 879,089 - -0.1 879,093 - +0.9 879,187 - -0.3 879,329 + yieH BNILDI_04450 0.11 +1.5 879,333 + yieH BNILDI_04450 0.12 -0.1 879,334 - yieH BNILDI_04450 0.12 +0.2 879,355 + yieH BNILDI_04450 0.15 -0.5 879,356 - yieH BNILDI_04450 0.15 +0.1 879,378 + yieH BNILDI_04450 0.19 +0.0 879,445 + yieH BNILDI_04450 0.29 -0.2 879,445 + yieH BNILDI_04450 0.29 +1.3 879,445 + yieH BNILDI_04450 0.29 -2.2 879,445 + yieH BNILDI_04450 0.29 +0.2 879,446 - yieH BNILDI_04450 0.29 -0.5 879,446 - yieH BNILDI_04450 0.29 +0.9 879,573 + yieH BNILDI_04450 0.48 +0.6 879,577 + yieH BNILDI_04450 0.48 -0.3 879,578 - yieH BNILDI_04450 0.49 +0.7 879,607 + yieH BNILDI_04450 0.53 +1.4 879,608 - yieH BNILDI_04450 0.53 -0.1 879,622 + yieH BNILDI_04450 0.55 -1.4 879,623 - yieH BNILDI_04450 0.55 +0.1 879,632 + yieH BNILDI_04450 0.57 +0.6 879,633 - yieH BNILDI_04450 0.57 -2.0 879,633 - yieH BNILDI_04450 0.57 +0.7 879,723 + yieH BNILDI_04450 0.70 -0.3 879,723 + yieH BNILDI_04450 0.70 -1.6 879,723 + yieH BNILDI_04450 0.70 +1.0 879,723 + yieH BNILDI_04450 0.70 -1.1 879,723 + yieH BNILDI_04450 0.70 +0.1 879,724 - yieH BNILDI_04450 0.71 -1.4 879,730 - yieH BNILDI_04450 0.71 -1.0 879,790 + yieH BNILDI_04450 0.80 -0.5 879,804 - yieH BNILDI_04450 0.83 -0.3 879,804 - yieH BNILDI_04450 0.83 +0.2 879,804 - yieH BNILDI_04450 0.83 -0.3 879,907 + -1.2 879,910 + -0.6 879,917 + +0.6 879,967 + +1.5 879,971 + -0.2 879,972 - +0.2 879,985 + -0.0 879,986 - -0.2 880,044 + cbrB BNILDI_04455 0.12 +0.6 880,070 + cbrB BNILDI_04455 0.18 +0.6 880,070 + cbrB BNILDI_04455 0.18 +0.2 880,071 - cbrB BNILDI_04455 0.18 +0.2 880,074 + cbrB BNILDI_04455 0.19 -1.5 880,110 + cbrB BNILDI_04455 0.26 -0.4 880,111 - cbrB BNILDI_04455 0.26 -2.8 880,120 - cbrB BNILDI_04455 0.28 -2.0 880,138 - cbrB BNILDI_04455 0.32 +0.9 880,248 + cbrB BNILDI_04455 0.55 +1.6 880,294 + cbrB BNILDI_04455 0.65 -0.8 880,294 + cbrB BNILDI_04455 0.65 +0.2 880,295 - cbrB BNILDI_04455 0.65 +0.8 880,475 + +0.4 880,481 + -0.3 880,481 + -0.0 880,512 - +0.4 880,537 + +0.2 880,538 - +2.2 880,538 - +0.1 880,538 - +1.0 880,563 - -0.0 880,680 + yieK BNILDI_04460 0.20 -0.1 880,681 - yieK BNILDI_04460 0.20 -0.1 880,729 + yieK BNILDI_04460 0.27 +0.8 880,729 + yieK BNILDI_04460 0.27 +0.6 880,730 - yieK BNILDI_04460 0.27 -0.5 880,730 - yieK BNILDI_04460 0.27 +0.2 880,781 + yieK BNILDI_04460 0.34 -0.6 880,781 + yieK BNILDI_04460 0.34 +1.9 880,838 + yieK BNILDI_04460 0.42 -1.0
Or see this region's nucleotide sequence