Experiment: Phage M13-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02264 and OHPLBJKB_02265 are separated by 180 nucleotides OHPLBJKB_02265 and OHPLBJKB_02266 overlap by 4 nucleotides OHPLBJKB_02266 and OHPLBJKB_02267 are separated by 0 nucleotides OHPLBJKB_02267 and OHPLBJKB_02268 are separated by 85 nucleotides OHPLBJKB_02268 and OHPLBJKB_02269 are separated by 165 nucleotides
OHPLBJKB_02264: OHPLBJKB_02264 - NADPH-dependent curcumin reductase, at 2,361,610 to 2,362,647
_02264
OHPLBJKB_02265: OHPLBJKB_02265 - L-amino acid N-acyltransferase MnaT, at 2,362,828 to 2,363,346
_02265
OHPLBJKB_02266: OHPLBJKB_02266 - Inner membrane protein YdcZ, at 2,363,343 to 2,363,792
_02266
OHPLBJKB_02267: OHPLBJKB_02267 - putative protein YdcY, at 2,363,793 to 2,364,026
_02267
OHPLBJKB_02268: OHPLBJKB_02268 - Orphan toxin OrtT, at 2,364,112 to 2,364,285
_02268
OHPLBJKB_02269: OHPLBJKB_02269 - IS1 family transposase IS1S, at 2,364,451 to 2,364,717
_02269
Position (kb)
2363
2364 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2362.380 kb on - strand, within OHPLBJKB_02264 at 2362.457 kb on + strand, within OHPLBJKB_02264 at 2362.476 kb on + strand, within OHPLBJKB_02264 at 2362.477 kb on - strand, within OHPLBJKB_02264 at 2362.477 kb on - strand, within OHPLBJKB_02264 at 2362.477 kb on - strand, within OHPLBJKB_02264 at 2362.477 kb on - strand, within OHPLBJKB_02264 at 2362.488 kb on + strand, within OHPLBJKB_02264 at 2362.488 kb on + strand, within OHPLBJKB_02264 at 2362.488 kb on + strand, within OHPLBJKB_02264 at 2362.488 kb on + strand, within OHPLBJKB_02264 at 2362.489 kb on - strand, within OHPLBJKB_02264 at 2362.490 kb on + strand, within OHPLBJKB_02264 at 2362.490 kb on + strand, within OHPLBJKB_02264 at 2362.491 kb on - strand, within OHPLBJKB_02264 at 2362.491 kb on - strand, within OHPLBJKB_02264 at 2362.491 kb on - strand, within OHPLBJKB_02264 at 2362.508 kb on + strand, within OHPLBJKB_02264 at 2362.509 kb on - strand, within OHPLBJKB_02264 at 2362.627 kb on - strand at 2362.746 kb on - strand at 2362.746 kb on - strand at 2362.788 kb on + strand at 2362.788 kb on + strand at 2362.788 kb on + strand at 2362.788 kb on + strand at 2362.789 kb on - strand at 2362.789 kb on - strand at 2362.789 kb on - strand at 2362.789 kb on - strand at 2362.789 kb on - strand at 2362.809 kb on + strand at 2362.809 kb on + strand at 2362.880 kb on - strand, within OHPLBJKB_02265 at 2362.897 kb on + strand, within OHPLBJKB_02265 at 2362.897 kb on + strand, within OHPLBJKB_02265 at 2362.897 kb on + strand, within OHPLBJKB_02265 at 2362.898 kb on - strand, within OHPLBJKB_02265 at 2362.898 kb on - strand, within OHPLBJKB_02265 at 2362.992 kb on - strand, within OHPLBJKB_02265 at 2363.020 kb on + strand, within OHPLBJKB_02265 at 2363.044 kb on - strand, within OHPLBJKB_02265 at 2363.084 kb on - strand, within OHPLBJKB_02265 at 2363.298 kb on + strand at 2363.298 kb on + strand at 2363.298 kb on + strand at 2363.298 kb on + strand at 2363.299 kb on - strand at 2363.299 kb on - strand at 2363.299 kb on - strand at 2363.564 kb on + strand, within OHPLBJKB_02266 at 2363.564 kb on + strand, within OHPLBJKB_02266 at 2363.564 kb on + strand, within OHPLBJKB_02266 at 2363.564 kb on + strand, within OHPLBJKB_02266 at 2363.564 kb on + strand, within OHPLBJKB_02266 at 2363.564 kb on + strand, within OHPLBJKB_02266 at 2363.564 kb on + strand, within OHPLBJKB_02266 at 2363.564 kb on + strand, within OHPLBJKB_02266 at 2363.564 kb on + strand, within OHPLBJKB_02266 at 2363.565 kb on - strand, within OHPLBJKB_02266 at 2363.565 kb on - strand, within OHPLBJKB_02266 at 2363.565 kb on - strand, within OHPLBJKB_02266 at 2363.565 kb on - strand, within OHPLBJKB_02266 at 2363.565 kb on - strand, within OHPLBJKB_02266 at 2363.640 kb on - strand, within OHPLBJKB_02266 at 2363.640 kb on - strand, within OHPLBJKB_02266 at 2363.640 kb on - strand, within OHPLBJKB_02266 at 2363.640 kb on - strand, within OHPLBJKB_02266 at 2363.665 kb on + strand, within OHPLBJKB_02266 at 2363.817 kb on + strand, within OHPLBJKB_02267 at 2363.920 kb on - strand, within OHPLBJKB_02267 at 2363.961 kb on - strand, within OHPLBJKB_02267 at 2364.027 kb on - strand at 2364.073 kb on + strand at 2364.074 kb on - strand at 2364.075 kb on + strand at 2364.075 kb on + strand at 2364.075 kb on + strand at 2364.076 kb on - strand at 2364.076 kb on - strand at 2364.076 kb on - strand at 2364.076 kb on - strand at 2364.076 kb on - strand at 2364.076 kb on - strand at 2364.107 kb on - strand at 2364.181 kb on + strand, within OHPLBJKB_02268 at 2364.181 kb on + strand, within OHPLBJKB_02268 at 2364.182 kb on - strand, within OHPLBJKB_02268 at 2364.287 kb on + strand at 2364.288 kb on - strand at 2364.325 kb on - strand at 2364.399 kb on - strand at 2364.420 kb on + strand at 2364.421 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phage M13-2 remove 2,362,380 - OHPLBJKB_02264 0.74 -0.4 2,362,457 + OHPLBJKB_02264 0.82 +0.6 2,362,476 + OHPLBJKB_02264 0.83 +0.1 2,362,477 - OHPLBJKB_02264 0.84 -1.2 2,362,477 - OHPLBJKB_02264 0.84 +0.6 2,362,477 - OHPLBJKB_02264 0.84 +1.4 2,362,477 - OHPLBJKB_02264 0.84 -0.2 2,362,488 + OHPLBJKB_02264 0.85 +1.4 2,362,488 + OHPLBJKB_02264 0.85 -0.7 2,362,488 + OHPLBJKB_02264 0.85 +1.4 2,362,488 + OHPLBJKB_02264 0.85 +0.4 2,362,489 - OHPLBJKB_02264 0.85 +0.4 2,362,490 + OHPLBJKB_02264 0.85 +2.4 2,362,490 + OHPLBJKB_02264 0.85 +1.3 2,362,491 - OHPLBJKB_02264 0.85 -0.2 2,362,491 - OHPLBJKB_02264 0.85 -1.4 2,362,491 - OHPLBJKB_02264 0.85 +0.1 2,362,508 + OHPLBJKB_02264 0.87 +0.4 2,362,509 - OHPLBJKB_02264 0.87 +0.4 2,362,627 - -1.5 2,362,746 - +0.8 2,362,746 - +1.2 2,362,788 + -0.1 2,362,788 + +2.0 2,362,788 + -1.0 2,362,788 + -0.0 2,362,789 - -0.3 2,362,789 - -1.2 2,362,789 - +0.4 2,362,789 - -0.7 2,362,789 - -0.6 2,362,809 + -1.8 2,362,809 + +0.8 2,362,880 - OHPLBJKB_02265 0.10 -0.5 2,362,897 + OHPLBJKB_02265 0.13 -1.7 2,362,897 + OHPLBJKB_02265 0.13 +0.7 2,362,897 + OHPLBJKB_02265 0.13 -1.0 2,362,898 - OHPLBJKB_02265 0.13 -1.8 2,362,898 - OHPLBJKB_02265 0.13 +0.1 2,362,992 - OHPLBJKB_02265 0.32 +0.7 2,363,020 + OHPLBJKB_02265 0.37 -0.2 2,363,044 - OHPLBJKB_02265 0.42 -0.3 2,363,084 - OHPLBJKB_02265 0.49 -0.3 2,363,298 + -0.9 2,363,298 + +1.5 2,363,298 + +1.6 2,363,298 + +0.3 2,363,299 - -0.2 2,363,299 - -1.0 2,363,299 - +1.6 2,363,564 + OHPLBJKB_02266 0.49 +2.7 2,363,564 + OHPLBJKB_02266 0.49 +1.4 2,363,564 + OHPLBJKB_02266 0.49 -0.4 2,363,564 + OHPLBJKB_02266 0.49 +0.6 2,363,564 + OHPLBJKB_02266 0.49 +1.1 2,363,564 + OHPLBJKB_02266 0.49 +0.4 2,363,564 + OHPLBJKB_02266 0.49 +1.2 2,363,564 + OHPLBJKB_02266 0.49 +1.7 2,363,564 + OHPLBJKB_02266 0.49 -2.5 2,363,565 - OHPLBJKB_02266 0.49 +1.4 2,363,565 - OHPLBJKB_02266 0.49 -0.4 2,363,565 - OHPLBJKB_02266 0.49 +2.1 2,363,565 - OHPLBJKB_02266 0.49 +0.4 2,363,565 - OHPLBJKB_02266 0.49 -0.6 2,363,640 - OHPLBJKB_02266 0.66 -0.4 2,363,640 - OHPLBJKB_02266 0.66 -0.6 2,363,640 - OHPLBJKB_02266 0.66 +2.0 2,363,640 - OHPLBJKB_02266 0.66 +1.8 2,363,665 + OHPLBJKB_02266 0.72 +1.4 2,363,817 + OHPLBJKB_02267 0.10 +1.1 2,363,920 - OHPLBJKB_02267 0.54 -0.7 2,363,961 - OHPLBJKB_02267 0.72 -1.5 2,364,027 - -1.1 2,364,073 + +2.1 2,364,074 - +1.5 2,364,075 + -0.2 2,364,075 + +2.4 2,364,075 + +1.3 2,364,076 - -0.6 2,364,076 - +1.9 2,364,076 - -1.1 2,364,076 - +1.4 2,364,076 - +1.8 2,364,076 - +0.1 2,364,107 - +0.6 2,364,181 + OHPLBJKB_02268 0.40 +0.9 2,364,181 + OHPLBJKB_02268 0.40 +0.4 2,364,182 - OHPLBJKB_02268 0.40 +1.2 2,364,287 + +1.4 2,364,288 - -0.2 2,364,325 - -1.1 2,364,399 - -1.9 2,364,420 + -1.4 2,364,421 - -0.4
Or see this region's nucleotide sequence