Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00883

Experiment: Phage M13-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00881 and OHPLBJKB_00882 are separated by 120 nucleotidesOHPLBJKB_00882 and OHPLBJKB_00883 are separated by 81 nucleotidesOHPLBJKB_00883 and OHPLBJKB_00884 are separated by 459 nucleotides OHPLBJKB_00881: OHPLBJKB_00881 - hypothetical protein, at 903,269 to 904,078 _00881 OHPLBJKB_00882: OHPLBJKB_00882 - hypothetical protein, at 904,199 to 904,330 _00882 OHPLBJKB_00883: OHPLBJKB_00883 - hypothetical protein, at 904,412 to 905,044 _00883 OHPLBJKB_00884: OHPLBJKB_00884 - Inner membrane transport protein YqeG, at 905,504 to 906,733 _00884 Position (kb) 904 905 906Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 903.413 kb on - strand, within OHPLBJKB_00881at 903.553 kb on + strand, within OHPLBJKB_00881at 903.609 kb on - strand, within OHPLBJKB_00881at 903.622 kb on + strand, within OHPLBJKB_00881at 903.715 kb on + strand, within OHPLBJKB_00881at 903.737 kb on + strand, within OHPLBJKB_00881at 903.758 kb on - strand, within OHPLBJKB_00881at 903.818 kb on - strand, within OHPLBJKB_00881at 903.865 kb on - strand, within OHPLBJKB_00881at 903.866 kb on + strand, within OHPLBJKB_00881at 903.867 kb on - strand, within OHPLBJKB_00881at 903.867 kb on - strand, within OHPLBJKB_00881at 903.867 kb on - strand, within OHPLBJKB_00881at 903.867 kb on - strand, within OHPLBJKB_00881at 903.874 kb on + strand, within OHPLBJKB_00881at 903.874 kb on + strand, within OHPLBJKB_00881at 903.875 kb on - strand, within OHPLBJKB_00881at 903.889 kb on + strand, within OHPLBJKB_00881at 903.889 kb on + strand, within OHPLBJKB_00881at 903.889 kb on + strand, within OHPLBJKB_00881at 903.956 kb on + strand, within OHPLBJKB_00881at 903.956 kb on + strand, within OHPLBJKB_00881at 903.956 kb on + strand, within OHPLBJKB_00881at 903.957 kb on - strand, within OHPLBJKB_00881at 904.000 kb on + strandat 904.001 kb on - strandat 904.012 kb on + strandat 904.012 kb on + strandat 904.026 kb on - strandat 904.026 kb on - strandat 904.094 kb on - strandat 904.118 kb on + strandat 904.119 kb on - strandat 904.142 kb on + strandat 904.143 kb on - strandat 904.154 kb on - strandat 904.154 kb on - strandat 904.155 kb on + strandat 904.156 kb on - strandat 904.156 kb on - strandat 904.157 kb on + strandat 904.169 kb on - strandat 904.310 kb on + strand, within OHPLBJKB_00882at 904.314 kb on - strand, within OHPLBJKB_00882at 904.352 kb on + strandat 904.451 kb on + strandat 904.452 kb on - strandat 904.502 kb on - strand, within OHPLBJKB_00883at 904.721 kb on - strand, within OHPLBJKB_00883at 904.890 kb on - strand, within OHPLBJKB_00883at 904.904 kb on - strand, within OHPLBJKB_00883at 904.931 kb on - strand, within OHPLBJKB_00883at 904.953 kb on + strand, within OHPLBJKB_00883at 905.069 kb on + strandat 905.277 kb on + strandat 905.282 kb on - strandat 905.315 kb on - strandat 905.315 kb on - strandat 905.327 kb on + strandat 905.327 kb on + strandat 905.342 kb on - strandat 905.356 kb on - strandat 905.356 kb on - strandat 905.502 kb on + strandat 905.551 kb on + strandat 905.598 kb on + strandat 905.598 kb on + strandat 905.627 kb on + strand, within OHPLBJKB_00884at 905.627 kb on + strand, within OHPLBJKB_00884at 905.627 kb on + strand, within OHPLBJKB_00884at 905.628 kb on - strand, within OHPLBJKB_00884at 905.658 kb on + strand, within OHPLBJKB_00884at 905.704 kb on + strand, within OHPLBJKB_00884at 905.722 kb on + strand, within OHPLBJKB_00884at 905.722 kb on + strand, within OHPLBJKB_00884at 905.723 kb on - strand, within OHPLBJKB_00884at 905.729 kb on + strand, within OHPLBJKB_00884at 905.741 kb on - strand, within OHPLBJKB_00884at 905.759 kb on + strand, within OHPLBJKB_00884at 905.774 kb on + strand, within OHPLBJKB_00884at 905.774 kb on + strand, within OHPLBJKB_00884at 905.774 kb on + strand, within OHPLBJKB_00884at 905.774 kb on + strand, within OHPLBJKB_00884at 905.775 kb on - strand, within OHPLBJKB_00884at 905.821 kb on - strand, within OHPLBJKB_00884at 905.825 kb on - strand, within OHPLBJKB_00884at 905.853 kb on - strand, within OHPLBJKB_00884at 905.853 kb on - strand, within OHPLBJKB_00884at 905.864 kb on - strand, within OHPLBJKB_00884at 905.955 kb on + strand, within OHPLBJKB_00884at 905.955 kb on + strand, within OHPLBJKB_00884at 905.956 kb on - strand, within OHPLBJKB_00884at 905.999 kb on + strand, within OHPLBJKB_00884at 906.000 kb on - strand, within OHPLBJKB_00884at 906.000 kb on - strand, within OHPLBJKB_00884at 906.006 kb on - strand, within OHPLBJKB_00884

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Per-strain Table

Position Strand Gene LocusTag Fraction Phage M13-2
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903,413 - OHPLBJKB_00881 0.18 -0.4
903,553 + OHPLBJKB_00881 0.35 -0.3
903,609 - OHPLBJKB_00881 0.42 -1.1
903,622 + OHPLBJKB_00881 0.44 +0.6
903,715 + OHPLBJKB_00881 0.55 -0.2
903,737 + OHPLBJKB_00881 0.58 +1.0
903,758 - OHPLBJKB_00881 0.60 -1.1
903,818 - OHPLBJKB_00881 0.68 +0.6
903,865 - OHPLBJKB_00881 0.74 +0.1
903,866 + OHPLBJKB_00881 0.74 +1.2
903,867 - OHPLBJKB_00881 0.74 -0.6
903,867 - OHPLBJKB_00881 0.74 +0.9
903,867 - OHPLBJKB_00881 0.74 +1.2
903,867 - OHPLBJKB_00881 0.74 +0.6
903,874 + OHPLBJKB_00881 0.75 -1.6
903,874 + OHPLBJKB_00881 0.75 -1.3
903,875 - OHPLBJKB_00881 0.75 -2.1
903,889 + OHPLBJKB_00881 0.77 +0.0
903,889 + OHPLBJKB_00881 0.77 -1.2
903,889 + OHPLBJKB_00881 0.77 +2.0
903,956 + OHPLBJKB_00881 0.85 -1.4
903,956 + OHPLBJKB_00881 0.85 +3.0
903,956 + OHPLBJKB_00881 0.85 +0.3
903,957 - OHPLBJKB_00881 0.85 -1.6
904,000 + +0.2
904,001 - +2.1
904,012 + -0.0
904,012 + -0.7
904,026 - +2.4
904,026 - -2.6
904,094 - -0.1
904,118 + +0.5
904,119 - +1.4
904,142 + -0.0
904,143 - +0.4
904,154 - -0.5
904,154 - -1.1
904,155 + +0.9
904,156 - -0.3
904,156 - +0.0
904,157 + +1.0
904,169 - -0.9
904,310 + OHPLBJKB_00882 0.84 +0.9
904,314 - OHPLBJKB_00882 0.87 +0.3
904,352 + +1.6
904,451 + -0.3
904,452 - -1.8
904,502 - OHPLBJKB_00883 0.14 +0.0
904,721 - OHPLBJKB_00883 0.49 -1.1
904,890 - OHPLBJKB_00883 0.76 -1.2
904,904 - OHPLBJKB_00883 0.78 +0.1
904,931 - OHPLBJKB_00883 0.82 -0.0
904,953 + OHPLBJKB_00883 0.85 -0.6
905,069 + -1.2
905,277 + -1.5
905,282 - -3.1
905,315 - -0.2
905,315 - +0.4
905,327 + +0.1
905,327 + -2.4
905,342 - +0.3
905,356 - -1.0
905,356 - -0.1
905,502 + -0.5
905,551 + +0.1
905,598 + -1.5
905,598 + -0.3
905,627 + OHPLBJKB_00884 0.10 -0.1
905,627 + OHPLBJKB_00884 0.10 -1.5
905,627 + OHPLBJKB_00884 0.10 -1.6
905,628 - OHPLBJKB_00884 0.10 -1.2
905,658 + OHPLBJKB_00884 0.13 +2.4
905,704 + OHPLBJKB_00884 0.16 -1.4
905,722 + OHPLBJKB_00884 0.18 -0.3
905,722 + OHPLBJKB_00884 0.18 -0.1
905,723 - OHPLBJKB_00884 0.18 -0.2
905,729 + OHPLBJKB_00884 0.18 -0.6
905,741 - OHPLBJKB_00884 0.19 -0.9
905,759 + OHPLBJKB_00884 0.21 -0.9
905,774 + OHPLBJKB_00884 0.22 -0.8
905,774 + OHPLBJKB_00884 0.22 +1.4
905,774 + OHPLBJKB_00884 0.22 -0.1
905,774 + OHPLBJKB_00884 0.22 -0.1
905,775 - OHPLBJKB_00884 0.22 +0.6
905,821 - OHPLBJKB_00884 0.26 +1.3
905,825 - OHPLBJKB_00884 0.26 +0.6
905,853 - OHPLBJKB_00884 0.28 +0.1
905,853 - OHPLBJKB_00884 0.28 +1.2
905,864 - OHPLBJKB_00884 0.29 +0.8
905,955 + OHPLBJKB_00884 0.37 -0.1
905,955 + OHPLBJKB_00884 0.37 +1.4
905,956 - OHPLBJKB_00884 0.37 +7.3
905,999 + OHPLBJKB_00884 0.40 +0.4
906,000 - OHPLBJKB_00884 0.40 -2.6
906,000 - OHPLBJKB_00884 0.40 -2.5
906,006 - OHPLBJKB_00884 0.41 -0.3

Or see this region's nucleotide sequence