Experiment: Phage M13-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00817 and OHPLBJKB_00818 are separated by 242 nucleotides OHPLBJKB_00818 and OHPLBJKB_00819 overlap by 20 nucleotides OHPLBJKB_00819 and OHPLBJKB_00820 are separated by 39 nucleotides OHPLBJKB_00820 and OHPLBJKB_00821 are separated by 111 nucleotides
OHPLBJKB_00817: OHPLBJKB_00817 - tRNA-modifying protein YgfZ, at 841,095 to 842,075
_00817
OHPLBJKB_00818: OHPLBJKB_00818 - FAD assembly factor SdhE, at 842,318 to 842,584
_00818
OHPLBJKB_00819: OHPLBJKB_00819 - Inner membrane protein YgfX, at 842,565 to 842,972
_00819
OHPLBJKB_00820: OHPLBJKB_00820 - Flavodoxin 2, at 843,012 to 843,533
_00820
OHPLBJKB_00821: OHPLBJKB_00821 - Tyrosine recombinase XerD, at 843,645 to 844,541
_00821
Position (kb) 843
844 Strain fitness (log2 ratio) -2
-1
0
1
2 at 842.079 kb on - strand at 842.079 kb on - strand at 842.079 kb on - strand at 842.079 kb on - strand at 842.104 kb on - strand at 842.114 kb on - strand at 842.119 kb on + strand at 842.119 kb on + strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.218 kb on - strand at 842.247 kb on + strand at 842.248 kb on - strand at 842.277 kb on + strand at 842.277 kb on + strand at 842.277 kb on + strand at 842.278 kb on - strand at 842.278 kb on - strand at 842.278 kb on - strand at 842.411 kb on + strand, within OHPLBJKB_00818 at 842.421 kb on + strand, within OHPLBJKB_00818 at 842.482 kb on + strand, within OHPLBJKB_00818 at 842.483 kb on - strand, within OHPLBJKB_00818 at 842.654 kb on - strand, within OHPLBJKB_00819 at 842.654 kb on - strand, within OHPLBJKB_00819 at 842.676 kb on + strand, within OHPLBJKB_00819 at 842.698 kb on + strand, within OHPLBJKB_00819 at 842.698 kb on + strand, within OHPLBJKB_00819 at 842.699 kb on - strand, within OHPLBJKB_00819 at 842.699 kb on - strand, within OHPLBJKB_00819 at 842.744 kb on + strand, within OHPLBJKB_00819 at 842.744 kb on + strand, within OHPLBJKB_00819 at 842.838 kb on - strand, within OHPLBJKB_00819 at 842.838 kb on - strand, within OHPLBJKB_00819 at 842.860 kb on + strand, within OHPLBJKB_00819 at 842.860 kb on + strand, within OHPLBJKB_00819 at 842.890 kb on + strand, within OHPLBJKB_00819 at 842.890 kb on + strand, within OHPLBJKB_00819 at 842.890 kb on + strand, within OHPLBJKB_00819 at 842.891 kb on - strand, within OHPLBJKB_00819 at 842.989 kb on + strand at 842.989 kb on + strand at 842.990 kb on - strand at 842.990 kb on - strand at 842.990 kb on - strand at 843.019 kb on + strand at 843.085 kb on + strand, within OHPLBJKB_00820 at 843.085 kb on + strand, within OHPLBJKB_00820 at 843.086 kb on - strand, within OHPLBJKB_00820 at 843.086 kb on - strand, within OHPLBJKB_00820 at 843.093 kb on - strand, within OHPLBJKB_00820 at 843.163 kb on + strand, within OHPLBJKB_00820 at 843.228 kb on - strand, within OHPLBJKB_00820 at 843.280 kb on + strand, within OHPLBJKB_00820 at 843.296 kb on + strand, within OHPLBJKB_00820 at 843.397 kb on + strand, within OHPLBJKB_00820 at 843.398 kb on - strand, within OHPLBJKB_00820 at 843.398 kb on - strand, within OHPLBJKB_00820 at 843.398 kb on - strand, within OHPLBJKB_00820 at 843.408 kb on + strand, within OHPLBJKB_00820 at 843.408 kb on + strand, within OHPLBJKB_00820 at 843.434 kb on + strand, within OHPLBJKB_00820 at 843.434 kb on + strand, within OHPLBJKB_00820 at 843.435 kb on - strand, within OHPLBJKB_00820 at 843.438 kb on + strand, within OHPLBJKB_00820 at 843.438 kb on + strand, within OHPLBJKB_00820 at 843.438 kb on + strand, within OHPLBJKB_00820 at 843.438 kb on + strand, within OHPLBJKB_00820 at 843.438 kb on + strand, within OHPLBJKB_00820 at 843.438 kb on + strand, within OHPLBJKB_00820 at 843.438 kb on + strand, within OHPLBJKB_00820 at 843.438 kb on + strand, within OHPLBJKB_00820 at 843.438 kb on + strand, within OHPLBJKB_00820 at 843.438 kb on + strand, within OHPLBJKB_00820 at 843.439 kb on - strand, within OHPLBJKB_00820 at 843.439 kb on - strand, within OHPLBJKB_00820 at 843.439 kb on - strand, within OHPLBJKB_00820 at 843.439 kb on - strand, within OHPLBJKB_00820 at 843.439 kb on - strand, within OHPLBJKB_00820 at 843.439 kb on - strand, within OHPLBJKB_00820 at 843.496 kb on + strand at 843.496 kb on + strand at 843.496 kb on + strand at 843.497 kb on - strand at 843.533 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.571 kb on + strand at 843.571 kb on + strand at 843.572 kb on - strand at 843.572 kb on - strand at 843.572 kb on - strand at 843.572 kb on - strand at 843.576 kb on + strand at 843.576 kb on + strand at 843.576 kb on + strand at 843.604 kb on + strand at 843.605 kb on - strand at 843.611 kb on + strand at 843.846 kb on - strand, within OHPLBJKB_00821 at 843.982 kb on + strand, within OHPLBJKB_00821 at 844.006 kb on + strand, within OHPLBJKB_00821 at 844.006 kb on + strand, within OHPLBJKB_00821 at 844.042 kb on + strand, within OHPLBJKB_00821 at 844.042 kb on + strand, within OHPLBJKB_00821 at 844.071 kb on + strand, within OHPLBJKB_00821 at 844.071 kb on + strand, within OHPLBJKB_00821 at 844.072 kb on - strand, within OHPLBJKB_00821 at 844.072 kb on - strand, within OHPLBJKB_00821 at 844.072 kb on - strand, within OHPLBJKB_00821 at 844.072 kb on - strand, within OHPLBJKB_00821 at 844.121 kb on + strand, within OHPLBJKB_00821 at 844.219 kb on - strand, within OHPLBJKB_00821 at 844.325 kb on + strand, within OHPLBJKB_00821 at 844.326 kb on - strand, within OHPLBJKB_00821 at 844.332 kb on + strand, within OHPLBJKB_00821 at 844.405 kb on + strand, within OHPLBJKB_00821 at 844.445 kb on - strand, within OHPLBJKB_00821 at 844.481 kb on + strand at 844.482 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phage M13-2 remove 842,079 - +0.8 842,079 - -1.1 842,079 - -1.4 842,079 - +0.6 842,104 - -0.1 842,114 - -0.1 842,119 + -0.1 842,119 + +0.3 842,129 - +0.1 842,129 - -1.4 842,129 - -1.2 842,218 - +0.4 842,247 + +0.4 842,248 - +1.5 842,277 + -1.2 842,277 + +1.1 842,277 + +0.5 842,278 - -0.5 842,278 - +0.2 842,278 - +0.2 842,411 + OHPLBJKB_00818 0.35 +0.5 842,421 + OHPLBJKB_00818 0.39 -1.6 842,482 + OHPLBJKB_00818 0.61 -0.4 842,483 - OHPLBJKB_00818 0.62 +0.8 842,654 - OHPLBJKB_00819 0.22 -0.8 842,654 - OHPLBJKB_00819 0.22 -0.8 842,676 + OHPLBJKB_00819 0.27 -1.0 842,698 + OHPLBJKB_00819 0.33 +0.7 842,698 + OHPLBJKB_00819 0.33 +0.4 842,699 - OHPLBJKB_00819 0.33 +0.4 842,699 - OHPLBJKB_00819 0.33 +0.9 842,744 + OHPLBJKB_00819 0.44 -0.5 842,744 + OHPLBJKB_00819 0.44 -1.7 842,838 - OHPLBJKB_00819 0.67 +1.5 842,838 - OHPLBJKB_00819 0.67 +1.1 842,860 + OHPLBJKB_00819 0.72 -0.3 842,860 + OHPLBJKB_00819 0.72 -0.4 842,890 + OHPLBJKB_00819 0.80 -1.8 842,890 + OHPLBJKB_00819 0.80 -1.7 842,890 + OHPLBJKB_00819 0.80 -0.6 842,891 - OHPLBJKB_00819 0.80 -1.1 842,989 + -1.6 842,989 + +0.5 842,990 - -0.2 842,990 - -0.3 842,990 - +0.9 843,019 + -1.1 843,085 + OHPLBJKB_00820 0.14 -0.8 843,085 + OHPLBJKB_00820 0.14 +0.8 843,086 - OHPLBJKB_00820 0.14 +1.1 843,086 - OHPLBJKB_00820 0.14 +0.3 843,093 - OHPLBJKB_00820 0.16 +1.0 843,163 + OHPLBJKB_00820 0.29 -1.1 843,228 - OHPLBJKB_00820 0.41 -1.3 843,280 + OHPLBJKB_00820 0.51 +0.9 843,296 + OHPLBJKB_00820 0.54 -0.5 843,397 + OHPLBJKB_00820 0.74 -2.2 843,398 - OHPLBJKB_00820 0.74 +0.2 843,398 - OHPLBJKB_00820 0.74 -1.3 843,398 - OHPLBJKB_00820 0.74 -0.1 843,408 + OHPLBJKB_00820 0.76 -1.3 843,408 + OHPLBJKB_00820 0.76 +1.8 843,434 + OHPLBJKB_00820 0.81 -0.8 843,434 + OHPLBJKB_00820 0.81 -0.0 843,435 - OHPLBJKB_00820 0.81 -1.1 843,438 + OHPLBJKB_00820 0.82 -1.8 843,438 + OHPLBJKB_00820 0.82 -2.0 843,438 + OHPLBJKB_00820 0.82 +0.2 843,438 + OHPLBJKB_00820 0.82 -0.1 843,438 + OHPLBJKB_00820 0.82 -1.0 843,438 + OHPLBJKB_00820 0.82 +2.2 843,438 + OHPLBJKB_00820 0.82 -0.7 843,438 + OHPLBJKB_00820 0.82 -0.1 843,438 + OHPLBJKB_00820 0.82 -0.3 843,438 + OHPLBJKB_00820 0.82 -0.5 843,439 - OHPLBJKB_00820 0.82 -2.0 843,439 - OHPLBJKB_00820 0.82 -0.1 843,439 - OHPLBJKB_00820 0.82 -0.3 843,439 - OHPLBJKB_00820 0.82 -1.3 843,439 - OHPLBJKB_00820 0.82 +0.7 843,439 - OHPLBJKB_00820 0.82 +0.9 843,496 + -1.4 843,496 + -0.3 843,496 + -0.5 843,497 - +0.5 843,533 + -0.8 843,538 + -0.5 843,538 + +0.9 843,538 + -1.8 843,539 - +0.5 843,539 - +0.2 843,539 - -0.3 843,539 - -1.3 843,539 - -0.8 843,539 - -1.4 843,539 - +1.3 843,539 - -0.3 843,571 + +0.3 843,571 + +2.2 843,572 - -1.6 843,572 - +0.0 843,572 - -0.6 843,572 - +0.2 843,576 + +0.5 843,576 + -0.3 843,576 + +2.5 843,604 + +0.3 843,605 - +0.5 843,611 + -0.5 843,846 - OHPLBJKB_00821 0.22 +0.2 843,982 + OHPLBJKB_00821 0.38 +1.5 844,006 + OHPLBJKB_00821 0.40 +1.5 844,006 + OHPLBJKB_00821 0.40 -0.7 844,042 + OHPLBJKB_00821 0.44 -1.1 844,042 + OHPLBJKB_00821 0.44 +2.5 844,071 + OHPLBJKB_00821 0.47 -0.1 844,071 + OHPLBJKB_00821 0.47 +0.9 844,072 - OHPLBJKB_00821 0.48 -0.5 844,072 - OHPLBJKB_00821 0.48 +1.9 844,072 - OHPLBJKB_00821 0.48 +0.9 844,072 - OHPLBJKB_00821 0.48 -0.4 844,121 + OHPLBJKB_00821 0.53 +0.5 844,219 - OHPLBJKB_00821 0.64 +0.9 844,325 + OHPLBJKB_00821 0.76 -0.5 844,326 - OHPLBJKB_00821 0.76 +1.2 844,332 + OHPLBJKB_00821 0.77 +1.9 844,405 + OHPLBJKB_00821 0.85 -0.7 844,445 - OHPLBJKB_00821 0.89 -0.1 844,481 + +0.5 844,482 - -0.3
Or see this region's nucleotide sequence