Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00315

Experiment: No phage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00314 and OHPLBJKB_00315 are separated by 91 nucleotidesOHPLBJKB_00315 and OHPLBJKB_00316 are separated by 106 nucleotidesOHPLBJKB_00316 and OHPLBJKB_00317 are separated by 17 nucleotides OHPLBJKB_00314: OHPLBJKB_00314 - 3-dehydroquinate synthase, at 348,058 to 349,146 _00314 OHPLBJKB_00315: OHPLBJKB_00315 - Cell division protein DamX, at 349,238 to 350,536 _00315 OHPLBJKB_00316: OHPLBJKB_00316 - DNA adenine methylase, at 350,643 to 351,479 _00316 OHPLBJKB_00317: OHPLBJKB_00317 - Ribulose-phosphate 3-epimerase, at 351,497 to 352,174 _00317 Position (kb) 349 350 351Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 348.281 kb on - strand, within OHPLBJKB_00314at 348.282 kb on + strand, within OHPLBJKB_00314at 348.282 kb on + strand, within OHPLBJKB_00314at 348.283 kb on - strand, within OHPLBJKB_00314at 348.348 kb on + strand, within OHPLBJKB_00314at 348.349 kb on - strand, within OHPLBJKB_00314at 348.349 kb on - strand, within OHPLBJKB_00314at 348.349 kb on - strand, within OHPLBJKB_00314at 348.375 kb on - strand, within OHPLBJKB_00314at 348.620 kb on - strand, within OHPLBJKB_00314at 348.620 kb on - strand, within OHPLBJKB_00314at 348.707 kb on - strand, within OHPLBJKB_00314at 348.711 kb on + strand, within OHPLBJKB_00314at 348.711 kb on + strand, within OHPLBJKB_00314at 348.711 kb on + strand, within OHPLBJKB_00314at 348.712 kb on - strand, within OHPLBJKB_00314at 348.845 kb on + strand, within OHPLBJKB_00314at 348.845 kb on + strand, within OHPLBJKB_00314at 348.845 kb on + strand, within OHPLBJKB_00314at 348.845 kb on + strand, within OHPLBJKB_00314at 348.846 kb on - strand, within OHPLBJKB_00314at 348.912 kb on + strand, within OHPLBJKB_00314at 348.933 kb on + strand, within OHPLBJKB_00314at 348.936 kb on + strand, within OHPLBJKB_00314at 348.936 kb on + strand, within OHPLBJKB_00314at 348.936 kb on + strand, within OHPLBJKB_00314at 348.936 kb on + strand, within OHPLBJKB_00314at 348.937 kb on - strand, within OHPLBJKB_00314at 348.937 kb on - strand, within OHPLBJKB_00314at 348.937 kb on - strand, within OHPLBJKB_00314at 348.938 kb on + strand, within OHPLBJKB_00314at 349.011 kb on + strand, within OHPLBJKB_00314at 349.012 kb on - strand, within OHPLBJKB_00314at 349.046 kb on + strandat 349.046 kb on + strandat 349.046 kb on + strandat 349.046 kb on + strandat 349.074 kb on + strandat 349.145 kb on - strandat 349.181 kb on + strandat 349.181 kb on + strandat 349.181 kb on + strandat 349.236 kb on - strandat 349.236 kb on - strandat 349.324 kb on + strandat 349.324 kb on + strandat 349.325 kb on - strandat 349.325 kb on - strandat 349.325 kb on - strandat 349.366 kb on + strandat 349.504 kb on + strand, within OHPLBJKB_00315at 349.544 kb on + strand, within OHPLBJKB_00315at 349.544 kb on + strand, within OHPLBJKB_00315at 349.544 kb on + strand, within OHPLBJKB_00315at 349.545 kb on - strand, within OHPLBJKB_00315at 349.545 kb on - strand, within OHPLBJKB_00315at 349.545 kb on - strand, within OHPLBJKB_00315at 349.545 kb on - strand, within OHPLBJKB_00315at 349.546 kb on + strand, within OHPLBJKB_00315at 349.546 kb on + strand, within OHPLBJKB_00315at 349.546 kb on + strand, within OHPLBJKB_00315at 349.546 kb on + strand, within OHPLBJKB_00315at 349.546 kb on + strand, within OHPLBJKB_00315at 349.546 kb on + strand, within OHPLBJKB_00315at 349.546 kb on + strand, within OHPLBJKB_00315at 349.546 kb on + strand, within OHPLBJKB_00315at 349.547 kb on - strand, within OHPLBJKB_00315at 349.547 kb on - strand, within OHPLBJKB_00315at 349.547 kb on - strand, within OHPLBJKB_00315at 349.547 kb on - strand, within OHPLBJKB_00315at 349.547 kb on - strand, within OHPLBJKB_00315at 349.547 kb on - strand, within OHPLBJKB_00315at 349.547 kb on - strand, within OHPLBJKB_00315at 349.547 kb on - strand, within OHPLBJKB_00315at 349.575 kb on + strand, within OHPLBJKB_00315at 349.575 kb on + strand, within OHPLBJKB_00315at 349.576 kb on - strand, within OHPLBJKB_00315at 349.576 kb on - strand, within OHPLBJKB_00315at 349.608 kb on + strand, within OHPLBJKB_00315at 349.660 kb on + strand, within OHPLBJKB_00315at 349.660 kb on + strand, within OHPLBJKB_00315at 349.772 kb on - strand, within OHPLBJKB_00315at 349.772 kb on - strand, within OHPLBJKB_00315at 349.900 kb on + strand, within OHPLBJKB_00315at 349.900 kb on + strand, within OHPLBJKB_00315at 350.093 kb on - strand, within OHPLBJKB_00315at 350.093 kb on - strand, within OHPLBJKB_00315at 350.144 kb on - strand, within OHPLBJKB_00315at 350.183 kb on - strand, within OHPLBJKB_00315at 350.291 kb on + strand, within OHPLBJKB_00315at 350.291 kb on + strand, within OHPLBJKB_00315at 350.317 kb on + strand, within OHPLBJKB_00315at 350.321 kb on + strand, within OHPLBJKB_00315at 350.321 kb on + strand, within OHPLBJKB_00315at 350.322 kb on - strand, within OHPLBJKB_00315at 350.366 kb on + strand, within OHPLBJKB_00315at 350.366 kb on + strand, within OHPLBJKB_00315at 350.367 kb on - strand, within OHPLBJKB_00315at 350.375 kb on + strand, within OHPLBJKB_00315at 350.405 kb on + strand, within OHPLBJKB_00315at 350.405 kb on + strand, within OHPLBJKB_00315at 350.406 kb on - strand, within OHPLBJKB_00315at 350.426 kb on + strandat 350.461 kb on + strandat 350.461 kb on + strandat 350.461 kb on + strandat 350.461 kb on + strandat 350.461 kb on + strandat 350.461 kb on + strandat 350.461 kb on + strandat 350.462 kb on - strandat 350.517 kb on + strandat 350.534 kb on + strandat 350.534 kb on + strandat 350.534 kb on + strandat 350.535 kb on - strandat 350.535 kb on - strandat 350.561 kb on + strandat 350.627 kb on + strandat 350.627 kb on + strandat 350.627 kb on + strandat 350.627 kb on + strandat 350.628 kb on - strandat 350.628 kb on - strandat 350.628 kb on - strandat 350.628 kb on - strandat 350.631 kb on + strandat 350.631 kb on + strandat 350.631 kb on + strandat 350.631 kb on + strandat 350.631 kb on + strandat 350.631 kb on + strandat 350.632 kb on - strandat 350.632 kb on - strandat 350.635 kb on + strandat 350.685 kb on + strandat 350.685 kb on + strandat 350.702 kb on + strandat 350.749 kb on + strand, within OHPLBJKB_00316at 350.750 kb on - strand, within OHPLBJKB_00316at 350.750 kb on - strand, within OHPLBJKB_00316at 350.750 kb on - strand, within OHPLBJKB_00316at 350.792 kb on + strand, within OHPLBJKB_00316at 350.829 kb on + strand, within OHPLBJKB_00316at 350.829 kb on + strand, within OHPLBJKB_00316at 350.829 kb on + strand, within OHPLBJKB_00316at 350.830 kb on - strand, within OHPLBJKB_00316at 350.830 kb on - strand, within OHPLBJKB_00316at 350.830 kb on - strand, within OHPLBJKB_00316at 350.832 kb on - strand, within OHPLBJKB_00316at 350.850 kb on - strand, within OHPLBJKB_00316at 350.863 kb on + strand, within OHPLBJKB_00316at 350.864 kb on - strand, within OHPLBJKB_00316at 350.864 kb on - strand, within OHPLBJKB_00316at 350.913 kb on + strand, within OHPLBJKB_00316at 350.914 kb on - strand, within OHPLBJKB_00316at 350.916 kb on + strand, within OHPLBJKB_00316at 350.978 kb on - strand, within OHPLBJKB_00316at 350.979 kb on + strand, within OHPLBJKB_00316at 351.087 kb on + strand, within OHPLBJKB_00316at 351.229 kb on - strand, within OHPLBJKB_00316at 351.246 kb on - strand, within OHPLBJKB_00316at 351.393 kb on - strand, within OHPLBJKB_00316at 351.393 kb on - strand, within OHPLBJKB_00316at 351.395 kb on - strand, within OHPLBJKB_00316at 351.416 kb on + strandat 351.506 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage
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348,281 - OHPLBJKB_00314 0.20 +0.5
348,282 + OHPLBJKB_00314 0.21 -0.8
348,282 + OHPLBJKB_00314 0.21 -1.3
348,283 - OHPLBJKB_00314 0.21 -0.7
348,348 + OHPLBJKB_00314 0.27 -2.3
348,349 - OHPLBJKB_00314 0.27 -0.1
348,349 - OHPLBJKB_00314 0.27 +0.9
348,349 - OHPLBJKB_00314 0.27 -1.2
348,375 - OHPLBJKB_00314 0.29 -1.8
348,620 - OHPLBJKB_00314 0.52 -1.4
348,620 - OHPLBJKB_00314 0.52 -2.2
348,707 - OHPLBJKB_00314 0.60 +0.3
348,711 + OHPLBJKB_00314 0.60 -1.7
348,711 + OHPLBJKB_00314 0.60 -1.9
348,711 + OHPLBJKB_00314 0.60 +0.9
348,712 - OHPLBJKB_00314 0.60 +1.4
348,845 + OHPLBJKB_00314 0.72 -1.5
348,845 + OHPLBJKB_00314 0.72 -1.9
348,845 + OHPLBJKB_00314 0.72 -0.9
348,845 + OHPLBJKB_00314 0.72 +1.9
348,846 - OHPLBJKB_00314 0.72 -1.4
348,912 + OHPLBJKB_00314 0.78 +0.3
348,933 + OHPLBJKB_00314 0.80 +0.2
348,936 + OHPLBJKB_00314 0.81 -0.9
348,936 + OHPLBJKB_00314 0.81 -2.0
348,936 + OHPLBJKB_00314 0.81 -1.2
348,936 + OHPLBJKB_00314 0.81 -1.1
348,937 - OHPLBJKB_00314 0.81 -0.3
348,937 - OHPLBJKB_00314 0.81 -0.4
348,937 - OHPLBJKB_00314 0.81 -0.1
348,938 + OHPLBJKB_00314 0.81 +0.3
349,011 + OHPLBJKB_00314 0.88 +0.3
349,012 - OHPLBJKB_00314 0.88 -0.7
349,046 + -2.2
349,046 + +1.9
349,046 + -0.5
349,046 + +2.1
349,074 + -2.2
349,145 - +0.3
349,181 + +0.1
349,181 + +0.3
349,181 + +0.1
349,236 - +1.6
349,236 - -1.1
349,324 + +1.5
349,324 + -1.4
349,325 - +0.9
349,325 - -0.1
349,325 - -1.4
349,366 + -2.5
349,504 + OHPLBJKB_00315 0.20 -0.1
349,544 + OHPLBJKB_00315 0.24 -0.1
349,544 + OHPLBJKB_00315 0.24 -1.2
349,544 + OHPLBJKB_00315 0.24 -0.5
349,545 - OHPLBJKB_00315 0.24 -2.6
349,545 - OHPLBJKB_00315 0.24 -0.2
349,545 - OHPLBJKB_00315 0.24 +1.9
349,545 - OHPLBJKB_00315 0.24 -0.0
349,546 + OHPLBJKB_00315 0.24 -1.3
349,546 + OHPLBJKB_00315 0.24 -0.4
349,546 + OHPLBJKB_00315 0.24 -1.4
349,546 + OHPLBJKB_00315 0.24 +1.1
349,546 + OHPLBJKB_00315 0.24 -0.1
349,546 + OHPLBJKB_00315 0.24 -0.4
349,546 + OHPLBJKB_00315 0.24 +0.6
349,546 + OHPLBJKB_00315 0.24 +0.4
349,547 - OHPLBJKB_00315 0.24 +1.7
349,547 - OHPLBJKB_00315 0.24 -0.5
349,547 - OHPLBJKB_00315 0.24 -1.2
349,547 - OHPLBJKB_00315 0.24 -1.3
349,547 - OHPLBJKB_00315 0.24 -1.2
349,547 - OHPLBJKB_00315 0.24 -0.9
349,547 - OHPLBJKB_00315 0.24 -0.2
349,547 - OHPLBJKB_00315 0.24 -3.1
349,575 + OHPLBJKB_00315 0.26 -2.4
349,575 + OHPLBJKB_00315 0.26 -0.0
349,576 - OHPLBJKB_00315 0.26 +1.9
349,576 - OHPLBJKB_00315 0.26 -3.1
349,608 + OHPLBJKB_00315 0.28 -3.4
349,660 + OHPLBJKB_00315 0.32 -1.3
349,660 + OHPLBJKB_00315 0.32 -1.0
349,772 - OHPLBJKB_00315 0.41 +1.1
349,772 - OHPLBJKB_00315 0.41 -3.0
349,900 + OHPLBJKB_00315 0.51 -1.2
349,900 + OHPLBJKB_00315 0.51 -0.5
350,093 - OHPLBJKB_00315 0.66 -1.2
350,093 - OHPLBJKB_00315 0.66 -1.5
350,144 - OHPLBJKB_00315 0.70 +0.8
350,183 - OHPLBJKB_00315 0.73 -0.5
350,291 + OHPLBJKB_00315 0.81 -0.0
350,291 + OHPLBJKB_00315 0.81 -0.8
350,317 + OHPLBJKB_00315 0.83 -2.3
350,321 + OHPLBJKB_00315 0.83 -1.9
350,321 + OHPLBJKB_00315 0.83 -1.1
350,322 - OHPLBJKB_00315 0.83 -0.7
350,366 + OHPLBJKB_00315 0.87 -1.7
350,366 + OHPLBJKB_00315 0.87 +0.3
350,367 - OHPLBJKB_00315 0.87 -0.9
350,375 + OHPLBJKB_00315 0.88 -2.1
350,405 + OHPLBJKB_00315 0.90 -0.1
350,405 + OHPLBJKB_00315 0.90 +0.3
350,406 - OHPLBJKB_00315 0.90 -1.5
350,426 + +0.7
350,461 + +0.1
350,461 + +0.3
350,461 + +0.9
350,461 + +0.0
350,461 + -1.0
350,461 + -0.0
350,461 + -0.2
350,462 - +0.5
350,517 + +0.8
350,534 + +0.2
350,534 + -0.6
350,534 + +0.1
350,535 - -0.7
350,535 - -0.2
350,561 + -1.1
350,627 + +0.2
350,627 + -0.1
350,627 + +0.4
350,627 + +0.4
350,628 - -1.2
350,628 - -1.9
350,628 - -2.2
350,628 - -1.5
350,631 + -0.1
350,631 + -0.5
350,631 + -0.7
350,631 + -0.6
350,631 + +0.4
350,631 + +0.6
350,632 - -0.3
350,632 - -0.9
350,635 + -0.3
350,685 + -0.7
350,685 + +0.3
350,702 + +0.9
350,749 + OHPLBJKB_00316 0.13 -0.4
350,750 - OHPLBJKB_00316 0.13 -3.0
350,750 - OHPLBJKB_00316 0.13 -0.7
350,750 - OHPLBJKB_00316 0.13 -0.1
350,792 + OHPLBJKB_00316 0.18 -0.1
350,829 + OHPLBJKB_00316 0.22 -1.8
350,829 + OHPLBJKB_00316 0.22 -1.4
350,829 + OHPLBJKB_00316 0.22 +0.9
350,830 - OHPLBJKB_00316 0.22 +1.3
350,830 - OHPLBJKB_00316 0.22 -0.0
350,830 - OHPLBJKB_00316 0.22 +1.5
350,832 - OHPLBJKB_00316 0.23 +0.6
350,850 - OHPLBJKB_00316 0.25 +1.5
350,863 + OHPLBJKB_00316 0.26 -1.2
350,864 - OHPLBJKB_00316 0.26 +1.3
350,864 - OHPLBJKB_00316 0.26 +1.3
350,913 + OHPLBJKB_00316 0.32 -0.9
350,914 - OHPLBJKB_00316 0.32 -0.4
350,916 + OHPLBJKB_00316 0.33 +0.6
350,978 - OHPLBJKB_00316 0.40 +0.6
350,979 + OHPLBJKB_00316 0.40 +0.9
351,087 + OHPLBJKB_00316 0.53 -0.7
351,229 - OHPLBJKB_00316 0.70 +0.5
351,246 - OHPLBJKB_00316 0.72 +0.3
351,393 - OHPLBJKB_00316 0.90 -2.0
351,393 - OHPLBJKB_00316 0.90 -0.7
351,395 - OHPLBJKB_00316 0.90 -0.7
351,416 + -1.2
351,506 + -0.4

Or see this region's nucleotide sequence