Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00630

Experiment: Phage vio 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00629 and OHPLBJKB_00630 are separated by 306 nucleotidesOHPLBJKB_00630 and OHPLBJKB_00631 are separated by 153 nucleotides OHPLBJKB_00629: OHPLBJKB_00629 - Putrescine aminotransferase, at 646,584 to 648,074 _00629 OHPLBJKB_00630: OHPLBJKB_00630 - Aerotaxis receptor, at 648,381 to 649,901 _00630 OHPLBJKB_00631: OHPLBJKB_00631 - Transcriptional regulator YqjI, at 650,055 to 650,678 _00631 Position (kb) 648 649 650Strain fitness (log2 ratio) -2 -1 0 1 2at 647.417 kb on + strand, within OHPLBJKB_00629at 647.418 kb on - strand, within OHPLBJKB_00629at 647.520 kb on - strand, within OHPLBJKB_00629at 647.523 kb on - strand, within OHPLBJKB_00629at 647.644 kb on - strand, within OHPLBJKB_00629at 647.666 kb on + strand, within OHPLBJKB_00629at 647.745 kb on + strand, within OHPLBJKB_00629at 647.745 kb on + strand, within OHPLBJKB_00629at 647.746 kb on - strand, within OHPLBJKB_00629at 647.766 kb on + strand, within OHPLBJKB_00629at 647.767 kb on - strand, within OHPLBJKB_00629at 647.807 kb on - strand, within OHPLBJKB_00629at 647.843 kb on - strand, within OHPLBJKB_00629at 647.846 kb on + strand, within OHPLBJKB_00629at 647.846 kb on + strand, within OHPLBJKB_00629at 647.847 kb on - strand, within OHPLBJKB_00629at 647.847 kb on - strand, within OHPLBJKB_00629at 647.847 kb on - strand, within OHPLBJKB_00629at 647.847 kb on - strand, within OHPLBJKB_00629at 647.861 kb on + strand, within OHPLBJKB_00629at 647.967 kb on - strandat 647.967 kb on - strandat 648.003 kb on + strandat 648.003 kb on + strandat 648.004 kb on - strandat 648.007 kb on + strandat 648.007 kb on + strandat 648.007 kb on + strandat 648.007 kb on + strandat 648.008 kb on - strandat 648.008 kb on - strandat 648.181 kb on - strandat 648.305 kb on + strandat 648.331 kb on + strandat 648.396 kb on + strandat 648.397 kb on - strandat 648.432 kb on - strandat 648.465 kb on + strandat 648.465 kb on + strandat 648.465 kb on + strandat 648.465 kb on + strandat 648.465 kb on + strandat 648.465 kb on + strandat 648.466 kb on - strandat 648.466 kb on - strandat 648.466 kb on - strandat 648.466 kb on - strandat 648.466 kb on - strandat 648.466 kb on - strandat 648.466 kb on - strandat 648.466 kb on - strandat 648.466 kb on - strandat 648.467 kb on + strandat 648.507 kb on + strandat 648.508 kb on - strandat 648.509 kb on + strandat 648.509 kb on + strandat 648.509 kb on + strandat 648.509 kb on + strandat 648.509 kb on + strandat 648.509 kb on + strandat 648.510 kb on - strandat 648.510 kb on - strandat 648.510 kb on - strandat 648.523 kb on + strandat 648.524 kb on - strandat 648.711 kb on + strand, within OHPLBJKB_00630at 648.711 kb on + strand, within OHPLBJKB_00630at 648.712 kb on + strand, within OHPLBJKB_00630at 648.712 kb on - strand, within OHPLBJKB_00630at 648.712 kb on - strand, within OHPLBJKB_00630at 648.712 kb on - strand, within OHPLBJKB_00630at 648.713 kb on + strand, within OHPLBJKB_00630at 648.713 kb on + strand, within OHPLBJKB_00630at 648.713 kb on + strand, within OHPLBJKB_00630at 648.713 kb on + strand, within OHPLBJKB_00630at 648.713 kb on + strand, within OHPLBJKB_00630at 648.713 kb on + strand, within OHPLBJKB_00630at 648.713 kb on + strand, within OHPLBJKB_00630at 648.714 kb on - strand, within OHPLBJKB_00630at 648.714 kb on - strand, within OHPLBJKB_00630at 648.714 kb on - strand, within OHPLBJKB_00630at 648.714 kb on - strand, within OHPLBJKB_00630at 648.714 kb on - strand, within OHPLBJKB_00630at 648.791 kb on + strand, within OHPLBJKB_00630at 648.792 kb on - strand, within OHPLBJKB_00630at 648.899 kb on + strand, within OHPLBJKB_00630at 648.900 kb on - strand, within OHPLBJKB_00630at 648.900 kb on - strand, within OHPLBJKB_00630at 648.948 kb on + strand, within OHPLBJKB_00630at 648.948 kb on + strand, within OHPLBJKB_00630at 648.948 kb on + strand, within OHPLBJKB_00630at 648.948 kb on + strand, within OHPLBJKB_00630at 648.948 kb on + strand, within OHPLBJKB_00630at 648.948 kb on + strand, within OHPLBJKB_00630at 648.948 kb on + strand, within OHPLBJKB_00630at 648.948 kb on + strand, within OHPLBJKB_00630at 648.948 kb on + strand, within OHPLBJKB_00630at 648.948 kb on + strand, within OHPLBJKB_00630at 648.948 kb on + strand, within OHPLBJKB_00630at 648.948 kb on + strand, within OHPLBJKB_00630at 648.949 kb on - strand, within OHPLBJKB_00630at 648.949 kb on - strand, within OHPLBJKB_00630at 648.949 kb on - strand, within OHPLBJKB_00630at 648.949 kb on - strand, within OHPLBJKB_00630at 648.949 kb on - strand, within OHPLBJKB_00630at 648.949 kb on - strand, within OHPLBJKB_00630at 648.949 kb on - strand, within OHPLBJKB_00630at 648.949 kb on - strand, within OHPLBJKB_00630at 648.949 kb on - strand, within OHPLBJKB_00630at 648.949 kb on - strand, within OHPLBJKB_00630at 648.949 kb on - strand, within OHPLBJKB_00630at 648.949 kb on - strand, within OHPLBJKB_00630at 648.949 kb on - strand, within OHPLBJKB_00630at 648.949 kb on - strand, within OHPLBJKB_00630at 648.949 kb on - strand, within OHPLBJKB_00630at 648.971 kb on - strand, within OHPLBJKB_00630at 649.015 kb on + strand, within OHPLBJKB_00630at 649.061 kb on + strand, within OHPLBJKB_00630at 649.061 kb on + strand, within OHPLBJKB_00630at 649.061 kb on + strand, within OHPLBJKB_00630at 649.061 kb on + strand, within OHPLBJKB_00630at 649.061 kb on + strand, within OHPLBJKB_00630at 649.061 kb on + strand, within OHPLBJKB_00630at 649.062 kb on - strand, within OHPLBJKB_00630at 649.062 kb on - strand, within OHPLBJKB_00630at 649.062 kb on - strand, within OHPLBJKB_00630at 649.062 kb on - strand, within OHPLBJKB_00630at 649.062 kb on - strand, within OHPLBJKB_00630at 649.062 kb on - strand, within OHPLBJKB_00630at 649.062 kb on - strand, within OHPLBJKB_00630at 649.062 kb on - strand, within OHPLBJKB_00630at 649.062 kb on - strand, within OHPLBJKB_00630at 649.064 kb on + strand, within OHPLBJKB_00630at 649.065 kb on - strand, within OHPLBJKB_00630at 649.108 kb on + strand, within OHPLBJKB_00630at 649.108 kb on + strand, within OHPLBJKB_00630at 649.109 kb on - strand, within OHPLBJKB_00630at 649.109 kb on - strand, within OHPLBJKB_00630at 649.109 kb on - strand, within OHPLBJKB_00630at 649.109 kb on - strand, within OHPLBJKB_00630at 649.151 kb on + strand, within OHPLBJKB_00630at 649.151 kb on + strand, within OHPLBJKB_00630at 649.151 kb on + strand, within OHPLBJKB_00630at 649.152 kb on - strand, within OHPLBJKB_00630at 649.233 kb on - strand, within OHPLBJKB_00630at 649.352 kb on + strand, within OHPLBJKB_00630at 649.352 kb on + strand, within OHPLBJKB_00630at 649.442 kb on + strand, within OHPLBJKB_00630at 649.442 kb on + strand, within OHPLBJKB_00630at 649.443 kb on - strand, within OHPLBJKB_00630at 649.568 kb on - strand, within OHPLBJKB_00630at 649.682 kb on + strand, within OHPLBJKB_00630at 649.683 kb on - strand, within OHPLBJKB_00630at 649.683 kb on - strand, within OHPLBJKB_00630at 649.683 kb on - strand, within OHPLBJKB_00630at 649.959 kb on + strandat 649.960 kb on - strandat 650.069 kb on + strandat 650.069 kb on + strandat 650.070 kb on - strandat 650.070 kb on - strandat 650.073 kb on - strandat 650.113 kb on - strandat 650.315 kb on + strand, within OHPLBJKB_00631at 650.315 kb on + strand, within OHPLBJKB_00631at 650.402 kb on - strand, within OHPLBJKB_00631at 650.402 kb on - strand, within OHPLBJKB_00631at 650.402 kb on - strand, within OHPLBJKB_00631at 650.402 kb on - strand, within OHPLBJKB_00631at 650.472 kb on - strand, within OHPLBJKB_00631at 650.651 kb on + strandat 650.651 kb on + strandat 650.652 kb on - strandat 650.652 kb on - strandat 650.731 kb on - strandat 650.863 kb on + strandat 650.863 kb on + strandat 650.863 kb on + strandat 650.865 kb on + strandat 650.866 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phage vio 1
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647,417 + OHPLBJKB_00629 0.56 -2.0
647,418 - OHPLBJKB_00629 0.56 -0.2
647,520 - OHPLBJKB_00629 0.63 -0.6
647,523 - OHPLBJKB_00629 0.63 +0.9
647,644 - OHPLBJKB_00629 0.71 +0.8
647,666 + OHPLBJKB_00629 0.73 -0.1
647,745 + OHPLBJKB_00629 0.78 +0.5
647,745 + OHPLBJKB_00629 0.78 -0.8
647,746 - OHPLBJKB_00629 0.78 +1.0
647,766 + OHPLBJKB_00629 0.79 +0.4
647,767 - OHPLBJKB_00629 0.79 +0.1
647,807 - OHPLBJKB_00629 0.82 +2.0
647,843 - OHPLBJKB_00629 0.84 +0.9
647,846 + OHPLBJKB_00629 0.85 -1.8
647,846 + OHPLBJKB_00629 0.85 -0.8
647,847 - OHPLBJKB_00629 0.85 -0.7
647,847 - OHPLBJKB_00629 0.85 -0.7
647,847 - OHPLBJKB_00629 0.85 +0.8
647,847 - OHPLBJKB_00629 0.85 -1.4
647,861 + OHPLBJKB_00629 0.86 -1.1
647,967 - -0.9
647,967 - +1.5
648,003 + -2.6
648,003 + -0.3
648,004 - -0.5
648,007 + -0.6
648,007 + +0.8
648,007 + -1.1
648,007 + -1.2
648,008 - +1.3
648,008 - -0.7
648,181 - -0.4
648,305 + -0.5
648,331 + +0.0
648,396 + -0.9
648,397 - +0.5
648,432 - +0.7
648,465 + -1.2
648,465 + +0.2
648,465 + -0.2
648,465 + +0.8
648,465 + +0.8
648,465 + -0.5
648,466 - -0.2
648,466 - +0.3
648,466 - +0.3
648,466 - +1.7
648,466 - -0.6
648,466 - +0.1
648,466 - -0.3
648,466 - -0.2
648,466 - -1.5
648,467 + +0.7
648,507 + -0.2
648,508 - -2.0
648,509 + -0.0
648,509 + -0.9
648,509 + -0.1
648,509 + +0.3
648,509 + +1.0
648,509 + +0.3
648,510 - -2.4
648,510 - -0.3
648,510 - -0.4
648,523 + -0.5
648,524 - -1.0
648,711 + OHPLBJKB_00630 0.22 -1.1
648,711 + OHPLBJKB_00630 0.22 +1.3
648,712 + OHPLBJKB_00630 0.22 -0.5
648,712 - OHPLBJKB_00630 0.22 +0.7
648,712 - OHPLBJKB_00630 0.22 -0.2
648,712 - OHPLBJKB_00630 0.22 -0.3
648,713 + OHPLBJKB_00630 0.22 -1.5
648,713 + OHPLBJKB_00630 0.22 -0.1
648,713 + OHPLBJKB_00630 0.22 +0.5
648,713 + OHPLBJKB_00630 0.22 -1.3
648,713 + OHPLBJKB_00630 0.22 +0.8
648,713 + OHPLBJKB_00630 0.22 -0.5
648,713 + OHPLBJKB_00630 0.22 +1.3
648,714 - OHPLBJKB_00630 0.22 +1.3
648,714 - OHPLBJKB_00630 0.22 -0.9
648,714 - OHPLBJKB_00630 0.22 +1.0
648,714 - OHPLBJKB_00630 0.22 -0.1
648,714 - OHPLBJKB_00630 0.22 +0.4
648,791 + OHPLBJKB_00630 0.27 +1.3
648,792 - OHPLBJKB_00630 0.27 -1.4
648,899 + OHPLBJKB_00630 0.34 +0.4
648,900 - OHPLBJKB_00630 0.34 -0.2
648,900 - OHPLBJKB_00630 0.34 +0.1
648,948 + OHPLBJKB_00630 0.37 -0.3
648,948 + OHPLBJKB_00630 0.37 +1.3
648,948 + OHPLBJKB_00630 0.37 +0.3
648,948 + OHPLBJKB_00630 0.37 -2.3
648,948 + OHPLBJKB_00630 0.37 +0.3
648,948 + OHPLBJKB_00630 0.37 -0.6
648,948 + OHPLBJKB_00630 0.37 +0.1
648,948 + OHPLBJKB_00630 0.37 +0.5
648,948 + OHPLBJKB_00630 0.37 -1.2
648,948 + OHPLBJKB_00630 0.37 +0.7
648,948 + OHPLBJKB_00630 0.37 +0.4
648,948 + OHPLBJKB_00630 0.37 +0.1
648,949 - OHPLBJKB_00630 0.37 -1.7
648,949 - OHPLBJKB_00630 0.37 -1.1
648,949 - OHPLBJKB_00630 0.37 -1.7
648,949 - OHPLBJKB_00630 0.37 -0.2
648,949 - OHPLBJKB_00630 0.37 -0.7
648,949 - OHPLBJKB_00630 0.37 +1.0
648,949 - OHPLBJKB_00630 0.37 -0.9
648,949 - OHPLBJKB_00630 0.37 -1.3
648,949 - OHPLBJKB_00630 0.37 -0.1
648,949 - OHPLBJKB_00630 0.37 -1.3
648,949 - OHPLBJKB_00630 0.37 -0.6
648,949 - OHPLBJKB_00630 0.37 +0.0
648,949 - OHPLBJKB_00630 0.37 -0.1
648,949 - OHPLBJKB_00630 0.37 -0.3
648,949 - OHPLBJKB_00630 0.37 -0.4
648,971 - OHPLBJKB_00630 0.39 -1.6
649,015 + OHPLBJKB_00630 0.42 -0.3
649,061 + OHPLBJKB_00630 0.45 +0.3
649,061 + OHPLBJKB_00630 0.45 -0.2
649,061 + OHPLBJKB_00630 0.45 +1.0
649,061 + OHPLBJKB_00630 0.45 +0.3
649,061 + OHPLBJKB_00630 0.45 -0.3
649,061 + OHPLBJKB_00630 0.45 -0.1
649,062 - OHPLBJKB_00630 0.45 +2.0
649,062 - OHPLBJKB_00630 0.45 +0.7
649,062 - OHPLBJKB_00630 0.45 +0.3
649,062 - OHPLBJKB_00630 0.45 -0.3
649,062 - OHPLBJKB_00630 0.45 +1.6
649,062 - OHPLBJKB_00630 0.45 -1.4
649,062 - OHPLBJKB_00630 0.45 +0.3
649,062 - OHPLBJKB_00630 0.45 +0.1
649,062 - OHPLBJKB_00630 0.45 -0.9
649,064 + OHPLBJKB_00630 0.45 +0.7
649,065 - OHPLBJKB_00630 0.45 +0.3
649,108 + OHPLBJKB_00630 0.48 +1.0
649,108 + OHPLBJKB_00630 0.48 -0.3
649,109 - OHPLBJKB_00630 0.48 -0.1
649,109 - OHPLBJKB_00630 0.48 -0.3
649,109 - OHPLBJKB_00630 0.48 +0.9
649,109 - OHPLBJKB_00630 0.48 +0.3
649,151 + OHPLBJKB_00630 0.51 -1.2
649,151 + OHPLBJKB_00630 0.51 -0.3
649,151 + OHPLBJKB_00630 0.51 -0.7
649,152 - OHPLBJKB_00630 0.51 -0.4
649,233 - OHPLBJKB_00630 0.56 -0.7
649,352 + OHPLBJKB_00630 0.64 -1.7
649,352 + OHPLBJKB_00630 0.64 -0.1
649,442 + OHPLBJKB_00630 0.70 +2.6
649,442 + OHPLBJKB_00630 0.70 -0.3
649,443 - OHPLBJKB_00630 0.70 -0.4
649,568 - OHPLBJKB_00630 0.78 -2.0
649,682 + OHPLBJKB_00630 0.86 -2.1
649,683 - OHPLBJKB_00630 0.86 -0.5
649,683 - OHPLBJKB_00630 0.86 -0.4
649,683 - OHPLBJKB_00630 0.86 -1.3
649,959 + -0.9
649,960 - +0.2
650,069 + +0.9
650,069 + -1.9
650,070 - +0.4
650,070 - +2.3
650,073 - -1.2
650,113 - +1.3
650,315 + OHPLBJKB_00631 0.42 +0.7
650,315 + OHPLBJKB_00631 0.42 -0.3
650,402 - OHPLBJKB_00631 0.56 -1.0
650,402 - OHPLBJKB_00631 0.56 -0.1
650,402 - OHPLBJKB_00631 0.56 -0.8
650,402 - OHPLBJKB_00631 0.56 -0.6
650,472 - OHPLBJKB_00631 0.67 -0.5
650,651 + -1.9
650,651 + -0.7
650,652 - +0.8
650,652 - +0.4
650,731 - +0.3
650,863 + +0.3
650,863 + +0.1
650,863 + -0.2
650,865 + +0.8
650,866 - +0.1

Or see this region's nucleotide sequence