Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00625

Experiment: Phage vio 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00624 and OHPLBJKB_00625 are separated by 62 nucleotidesOHPLBJKB_00625 and OHPLBJKB_00626 overlap by 4 nucleotides OHPLBJKB_00624: OHPLBJKB_00624 - Inner membrane transporter YgjI, at 639,790 to 641,223 _00624 OHPLBJKB_00625: OHPLBJKB_00625 - Evolved beta-galactosidase subunit beta, at 641,286 to 641,735 _00625 OHPLBJKB_00626: OHPLBJKB_00626 - Evolved beta-galactosidase subunit alpha, at 641,732 to 644,824 _00626 Position (kb) 641 642Strain fitness (log2 ratio) -2 -1 0 1 2at 640.397 kb on + strand, within OHPLBJKB_00624at 640.398 kb on - strand, within OHPLBJKB_00624at 640.417 kb on + strand, within OHPLBJKB_00624at 640.418 kb on - strand, within OHPLBJKB_00624at 640.418 kb on - strand, within OHPLBJKB_00624at 640.493 kb on + strand, within OHPLBJKB_00624at 640.493 kb on + strand, within OHPLBJKB_00624at 640.494 kb on - strand, within OHPLBJKB_00624at 640.498 kb on + strand, within OHPLBJKB_00624at 640.498 kb on + strand, within OHPLBJKB_00624at 640.571 kb on + strand, within OHPLBJKB_00624at 640.571 kb on + strand, within OHPLBJKB_00624at 640.571 kb on + strand, within OHPLBJKB_00624at 640.571 kb on + strand, within OHPLBJKB_00624at 640.572 kb on - strand, within OHPLBJKB_00624at 640.572 kb on - strand, within OHPLBJKB_00624at 640.724 kb on + strand, within OHPLBJKB_00624at 640.767 kb on + strand, within OHPLBJKB_00624at 640.830 kb on + strand, within OHPLBJKB_00624at 640.830 kb on + strand, within OHPLBJKB_00624at 640.831 kb on - strand, within OHPLBJKB_00624at 640.831 kb on - strand, within OHPLBJKB_00624at 640.860 kb on + strand, within OHPLBJKB_00624at 640.864 kb on - strand, within OHPLBJKB_00624at 640.865 kb on + strand, within OHPLBJKB_00624at 640.865 kb on + strand, within OHPLBJKB_00624at 640.866 kb on - strand, within OHPLBJKB_00624at 640.887 kb on - strand, within OHPLBJKB_00624at 640.895 kb on + strand, within OHPLBJKB_00624at 640.895 kb on + strand, within OHPLBJKB_00624at 640.896 kb on - strand, within OHPLBJKB_00624at 640.939 kb on + strand, within OHPLBJKB_00624at 640.949 kb on + strand, within OHPLBJKB_00624at 640.949 kb on + strand, within OHPLBJKB_00624at 640.949 kb on + strand, within OHPLBJKB_00624at 640.950 kb on - strand, within OHPLBJKB_00624at 640.953 kb on + strand, within OHPLBJKB_00624at 640.954 kb on - strand, within OHPLBJKB_00624at 640.954 kb on - strand, within OHPLBJKB_00624at 640.966 kb on - strand, within OHPLBJKB_00624at 641.224 kb on - strandat 641.244 kb on + strandat 641.281 kb on - strandat 641.358 kb on - strand, within OHPLBJKB_00625at 641.433 kb on + strand, within OHPLBJKB_00625at 641.524 kb on + strand, within OHPLBJKB_00625at 641.528 kb on - strand, within OHPLBJKB_00625at 641.528 kb on - strand, within OHPLBJKB_00625at 641.563 kb on - strand, within OHPLBJKB_00625at 641.597 kb on - strand, within OHPLBJKB_00625at 641.695 kb on + strandat 641.696 kb on - strandat 641.721 kb on - strandat 641.740 kb on + strandat 641.741 kb on - strandat 641.810 kb on - strandat 641.840 kb on - strandat 641.840 kb on - strandat 641.971 kb on + strandat 642.005 kb on - strandat 642.127 kb on - strand, within OHPLBJKB_00626at 642.219 kb on + strand, within OHPLBJKB_00626at 642.220 kb on - strand, within OHPLBJKB_00626at 642.222 kb on + strand, within OHPLBJKB_00626at 642.223 kb on - strand, within OHPLBJKB_00626at 642.223 kb on - strand, within OHPLBJKB_00626at 642.238 kb on - strand, within OHPLBJKB_00626at 642.238 kb on - strand, within OHPLBJKB_00626at 642.354 kb on + strand, within OHPLBJKB_00626at 642.354 kb on + strand, within OHPLBJKB_00626at 642.354 kb on + strand, within OHPLBJKB_00626at 642.354 kb on + strand, within OHPLBJKB_00626at 642.355 kb on - strand, within OHPLBJKB_00626at 642.355 kb on - strand, within OHPLBJKB_00626at 642.355 kb on - strand, within OHPLBJKB_00626at 642.355 kb on - strand, within OHPLBJKB_00626at 642.355 kb on - strand, within OHPLBJKB_00626at 642.393 kb on - strand, within OHPLBJKB_00626at 642.502 kb on - strand, within OHPLBJKB_00626at 642.579 kb on - strand, within OHPLBJKB_00626at 642.579 kb on - strand, within OHPLBJKB_00626at 642.634 kb on - strand, within OHPLBJKB_00626at 642.688 kb on + strand, within OHPLBJKB_00626at 642.688 kb on + strand, within OHPLBJKB_00626at 642.689 kb on - strand, within OHPLBJKB_00626

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Per-strain Table

Position Strand Gene LocusTag Fraction Phage vio 1
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640,397 + OHPLBJKB_00624 0.42 -0.9
640,398 - OHPLBJKB_00624 0.42 +1.3
640,417 + OHPLBJKB_00624 0.44 -0.1
640,418 - OHPLBJKB_00624 0.44 -0.1
640,418 - OHPLBJKB_00624 0.44 +1.9
640,493 + OHPLBJKB_00624 0.49 -1.6
640,493 + OHPLBJKB_00624 0.49 +0.9
640,494 - OHPLBJKB_00624 0.49 +0.9
640,498 + OHPLBJKB_00624 0.49 +0.7
640,498 + OHPLBJKB_00624 0.49 -1.5
640,571 + OHPLBJKB_00624 0.54 +0.1
640,571 + OHPLBJKB_00624 0.54 +0.1
640,571 + OHPLBJKB_00624 0.54 +0.0
640,571 + OHPLBJKB_00624 0.54 -0.1
640,572 - OHPLBJKB_00624 0.55 -1.0
640,572 - OHPLBJKB_00624 0.55 +0.0
640,724 + OHPLBJKB_00624 0.65 -0.4
640,767 + OHPLBJKB_00624 0.68 -0.5
640,830 + OHPLBJKB_00624 0.73 +1.7
640,830 + OHPLBJKB_00624 0.73 +0.3
640,831 - OHPLBJKB_00624 0.73 +1.1
640,831 - OHPLBJKB_00624 0.73 -0.6
640,860 + OHPLBJKB_00624 0.75 +0.4
640,864 - OHPLBJKB_00624 0.75 -0.2
640,865 + OHPLBJKB_00624 0.75 +1.3
640,865 + OHPLBJKB_00624 0.75 -1.2
640,866 - OHPLBJKB_00624 0.75 -0.0
640,887 - OHPLBJKB_00624 0.76 +0.3
640,895 + OHPLBJKB_00624 0.77 -0.2
640,895 + OHPLBJKB_00624 0.77 +0.5
640,896 - OHPLBJKB_00624 0.77 +0.5
640,939 + OHPLBJKB_00624 0.80 -1.1
640,949 + OHPLBJKB_00624 0.81 -0.8
640,949 + OHPLBJKB_00624 0.81 -2.4
640,949 + OHPLBJKB_00624 0.81 -1.1
640,950 - OHPLBJKB_00624 0.81 +0.4
640,953 + OHPLBJKB_00624 0.81 -0.5
640,954 - OHPLBJKB_00624 0.81 -0.8
640,954 - OHPLBJKB_00624 0.81 +0.1
640,966 - OHPLBJKB_00624 0.82 -0.2
641,224 - -0.1
641,244 + +0.8
641,281 - -0.2
641,358 - OHPLBJKB_00625 0.16 -2.2
641,433 + OHPLBJKB_00625 0.33 -2.1
641,524 + OHPLBJKB_00625 0.53 +2.0
641,528 - OHPLBJKB_00625 0.54 -0.1
641,528 - OHPLBJKB_00625 0.54 -1.0
641,563 - OHPLBJKB_00625 0.62 +2.3
641,597 - OHPLBJKB_00625 0.69 +1.2
641,695 + +0.7
641,696 - +0.7
641,721 - -0.5
641,740 + +0.7
641,741 - +0.9
641,810 - -1.0
641,840 - -0.4
641,840 - +0.3
641,971 + -0.3
642,005 - -2.2
642,127 - OHPLBJKB_00626 0.13 +0.3
642,219 + OHPLBJKB_00626 0.16 +0.1
642,220 - OHPLBJKB_00626 0.16 +0.7
642,222 + OHPLBJKB_00626 0.16 +0.0
642,223 - OHPLBJKB_00626 0.16 +0.3
642,223 - OHPLBJKB_00626 0.16 -0.5
642,238 - OHPLBJKB_00626 0.16 +0.4
642,238 - OHPLBJKB_00626 0.16 -0.0
642,354 + OHPLBJKB_00626 0.20 +0.8
642,354 + OHPLBJKB_00626 0.20 -1.5
642,354 + OHPLBJKB_00626 0.20 -1.1
642,354 + OHPLBJKB_00626 0.20 +0.1
642,355 - OHPLBJKB_00626 0.20 -1.5
642,355 - OHPLBJKB_00626 0.20 +0.3
642,355 - OHPLBJKB_00626 0.20 -1.2
642,355 - OHPLBJKB_00626 0.20 -1.5
642,355 - OHPLBJKB_00626 0.20 -0.1
642,393 - OHPLBJKB_00626 0.21 -0.3
642,502 - OHPLBJKB_00626 0.25 +0.2
642,579 - OHPLBJKB_00626 0.27 -0.1
642,579 - OHPLBJKB_00626 0.27 -0.7
642,634 - OHPLBJKB_00626 0.29 +0.9
642,688 + OHPLBJKB_00626 0.31 -0.9
642,688 + OHPLBJKB_00626 0.31 -1.5
642,689 - OHPLBJKB_00626 0.31 +0.0

Or see this region's nucleotide sequence