Experiment: Phage Ame 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_03611 and OHPLBJKB_03612 are separated by 58 nucleotides OHPLBJKB_03612 and OHPLBJKB_03613 overlap by 4 nucleotides
OHPLBJKB_03611: OHPLBJKB_03611 - Inner membrane metabolite transport protein YgcS, at 3,792,062 to 3,793,393
_03611
OHPLBJKB_03612: OHPLBJKB_03612 - Ferredoxin-like protein FixX, at 3,793,452 to 3,793,739
_03612
OHPLBJKB_03613: OHPLBJKB_03613 - Putative thiazole biosynthetic enzyme, at 3,793,736 to 3,795,022
_03613
Position (kb)
3793
3794 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3792.485 kb on + strand, within OHPLBJKB_03611 at 3792.506 kb on - strand, within OHPLBJKB_03611 at 3792.606 kb on + strand, within OHPLBJKB_03611 at 3792.792 kb on - strand, within OHPLBJKB_03611 at 3792.794 kb on + strand, within OHPLBJKB_03611 at 3792.898 kb on - strand, within OHPLBJKB_03611 at 3792.939 kb on + strand, within OHPLBJKB_03611 at 3792.939 kb on + strand, within OHPLBJKB_03611 at 3792.940 kb on - strand, within OHPLBJKB_03611 at 3793.127 kb on - strand, within OHPLBJKB_03611 at 3793.168 kb on + strand, within OHPLBJKB_03611 at 3793.296 kb on - strand at 3793.296 kb on - strand at 3793.296 kb on - strand at 3793.296 kb on - strand at 3793.296 kb on - strand at 3793.299 kb on + strand at 3793.299 kb on + strand at 3793.299 kb on + strand at 3793.299 kb on + strand at 3793.299 kb on + strand at 3793.299 kb on + strand at 3793.300 kb on - strand at 3793.300 kb on - strand at 3793.300 kb on - strand at 3793.399 kb on - strand at 3793.436 kb on - strand at 3793.440 kb on - strand at 3793.440 kb on - strand at 3793.597 kb on + strand, within OHPLBJKB_03612 at 3793.598 kb on - strand, within OHPLBJKB_03612 at 3793.598 kb on - strand, within OHPLBJKB_03612 at 3793.935 kb on + strand, within OHPLBJKB_03613 at 3793.935 kb on + strand, within OHPLBJKB_03613 at 3793.936 kb on - strand, within OHPLBJKB_03613 at 3793.939 kb on + strand, within OHPLBJKB_03613 at 3793.939 kb on + strand, within OHPLBJKB_03613 at 3793.939 kb on + strand, within OHPLBJKB_03613 at 3793.939 kb on + strand, within OHPLBJKB_03613 at 3793.939 kb on + strand, within OHPLBJKB_03613 at 3793.939 kb on + strand, within OHPLBJKB_03613 at 3793.939 kb on + strand, within OHPLBJKB_03613 at 3793.939 kb on + strand, within OHPLBJKB_03613 at 3793.939 kb on + strand, within OHPLBJKB_03613 at 3793.939 kb on + strand, within OHPLBJKB_03613 at 3793.939 kb on + strand, within OHPLBJKB_03613 at 3793.939 kb on + strand, within OHPLBJKB_03613 at 3793.940 kb on - strand, within OHPLBJKB_03613 at 3793.940 kb on - strand, within OHPLBJKB_03613 at 3793.940 kb on - strand, within OHPLBJKB_03613 at 3793.940 kb on - strand, within OHPLBJKB_03613 at 3793.940 kb on - strand, within OHPLBJKB_03613 at 3793.940 kb on - strand, within OHPLBJKB_03613 at 3793.940 kb on - strand, within OHPLBJKB_03613 at 3793.940 kb on - strand, within OHPLBJKB_03613 at 3793.940 kb on - strand, within OHPLBJKB_03613 at 3793.940 kb on - strand, within OHPLBJKB_03613 at 3793.940 kb on - strand, within OHPLBJKB_03613 at 3793.940 kb on - strand, within OHPLBJKB_03613 at 3794.087 kb on - strand, within OHPLBJKB_03613 at 3794.101 kb on + strand, within OHPLBJKB_03613 at 3794.102 kb on - strand, within OHPLBJKB_03613 at 3794.102 kb on - strand, within OHPLBJKB_03613 at 3794.183 kb on + strand, within OHPLBJKB_03613 at 3794.184 kb on - strand, within OHPLBJKB_03613 at 3794.197 kb on - strand, within OHPLBJKB_03613 at 3794.197 kb on - strand, within OHPLBJKB_03613 at 3794.342 kb on - strand, within OHPLBJKB_03613 at 3794.343 kb on + strand, within OHPLBJKB_03613 at 3794.344 kb on - strand, within OHPLBJKB_03613 at 3794.410 kb on + strand, within OHPLBJKB_03613 at 3794.591 kb on + strand, within OHPLBJKB_03613 at 3794.592 kb on - strand, within OHPLBJKB_03613 at 3794.618 kb on + strand, within OHPLBJKB_03613 at 3794.618 kb on + strand, within OHPLBJKB_03613 at 3794.648 kb on + strand, within OHPLBJKB_03613 at 3794.648 kb on + strand, within OHPLBJKB_03613 at 3794.649 kb on - strand, within OHPLBJKB_03613
Per-strain Table
Position Strand Gene LocusTag Fraction Phage Ame 1 remove 3,792,485 + OHPLBJKB_03611 0.32 -1.8 3,792,506 - OHPLBJKB_03611 0.33 -0.2 3,792,606 + OHPLBJKB_03611 0.41 -1.6 3,792,792 - OHPLBJKB_03611 0.55 +2.5 3,792,794 + OHPLBJKB_03611 0.55 +0.5 3,792,898 - OHPLBJKB_03611 0.63 +1.0 3,792,939 + OHPLBJKB_03611 0.66 -0.1 3,792,939 + OHPLBJKB_03611 0.66 -1.4 3,792,940 - OHPLBJKB_03611 0.66 -0.1 3,793,127 - OHPLBJKB_03611 0.80 +0.2 3,793,168 + OHPLBJKB_03611 0.83 +0.7 3,793,296 - +0.2 3,793,296 - -2.0 3,793,296 - +1.1 3,793,296 - -2.0 3,793,296 - -0.4 3,793,299 + -1.3 3,793,299 + -0.7 3,793,299 + +0.1 3,793,299 + +0.6 3,793,299 + +0.1 3,793,299 + -1.0 3,793,300 - -1.4 3,793,300 - -0.0 3,793,300 - -0.1 3,793,399 - -0.0 3,793,436 - +1.0 3,793,440 - +0.5 3,793,440 - +0.4 3,793,597 + OHPLBJKB_03612 0.50 +0.1 3,793,598 - OHPLBJKB_03612 0.51 +0.2 3,793,598 - OHPLBJKB_03612 0.51 -1.4 3,793,935 + OHPLBJKB_03613 0.15 -0.1 3,793,935 + OHPLBJKB_03613 0.15 -0.6 3,793,936 - OHPLBJKB_03613 0.16 +0.2 3,793,939 + OHPLBJKB_03613 0.16 -0.5 3,793,939 + OHPLBJKB_03613 0.16 +1.1 3,793,939 + OHPLBJKB_03613 0.16 +0.4 3,793,939 + OHPLBJKB_03613 0.16 +0.3 3,793,939 + OHPLBJKB_03613 0.16 -1.3 3,793,939 + OHPLBJKB_03613 0.16 -0.7 3,793,939 + OHPLBJKB_03613 0.16 -1.0 3,793,939 + OHPLBJKB_03613 0.16 +0.2 3,793,939 + OHPLBJKB_03613 0.16 +1.5 3,793,939 + OHPLBJKB_03613 0.16 +2.5 3,793,939 + OHPLBJKB_03613 0.16 -0.7 3,793,939 + OHPLBJKB_03613 0.16 +0.4 3,793,940 - OHPLBJKB_03613 0.16 +0.8 3,793,940 - OHPLBJKB_03613 0.16 +1.5 3,793,940 - OHPLBJKB_03613 0.16 -0.4 3,793,940 - OHPLBJKB_03613 0.16 +0.1 3,793,940 - OHPLBJKB_03613 0.16 -1.1 3,793,940 - OHPLBJKB_03613 0.16 +0.0 3,793,940 - OHPLBJKB_03613 0.16 -0.3 3,793,940 - OHPLBJKB_03613 0.16 +0.2 3,793,940 - OHPLBJKB_03613 0.16 -1.5 3,793,940 - OHPLBJKB_03613 0.16 +0.0 3,793,940 - OHPLBJKB_03613 0.16 -1.0 3,793,940 - OHPLBJKB_03613 0.16 -1.6 3,794,087 - OHPLBJKB_03613 0.27 -0.9 3,794,101 + OHPLBJKB_03613 0.28 -0.3 3,794,102 - OHPLBJKB_03613 0.28 +0.1 3,794,102 - OHPLBJKB_03613 0.28 +3.2 3,794,183 + OHPLBJKB_03613 0.35 -0.4 3,794,184 - OHPLBJKB_03613 0.35 +0.7 3,794,197 - OHPLBJKB_03613 0.36 +0.4 3,794,197 - OHPLBJKB_03613 0.36 -0.5 3,794,342 - OHPLBJKB_03613 0.47 -0.3 3,794,343 + OHPLBJKB_03613 0.47 +0.4 3,794,344 - OHPLBJKB_03613 0.47 +1.0 3,794,410 + OHPLBJKB_03613 0.52 +0.2 3,794,591 + OHPLBJKB_03613 0.66 +0.2 3,794,592 - OHPLBJKB_03613 0.67 -1.8 3,794,618 + OHPLBJKB_03613 0.69 +0.3 3,794,618 + OHPLBJKB_03613 0.69 -1.9 3,794,648 + OHPLBJKB_03613 0.71 -0.1 3,794,648 + OHPLBJKB_03613 0.71 +1.1 3,794,649 - OHPLBJKB_03613 0.71 -0.0
Or see this region's nucleotide sequence