Experiment: Phage Ame 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00250 and OHPLBJKB_00251 are separated by 97 nucleotides OHPLBJKB_00251 and OHPLBJKB_00252 overlap by 4 nucleotides OHPLBJKB_00252 and OHPLBJKB_00253 are separated by 1 nucleotides
OHPLBJKB_00250: OHPLBJKB_00250 - sn-glycerol-3-phosphate-binding periplasmic protein UgpB, at 272,318 to 273,634
_00250
OHPLBJKB_00251: OHPLBJKB_00251 - sn-glycerol-3-phosphate transport system permease protein UgpA, at 273,732 to 274,619
_00251
OHPLBJKB_00252: OHPLBJKB_00252 - Lactose transport system permease protein LacG, at 274,616 to 275,461
_00252
OHPLBJKB_00253: OHPLBJKB_00253 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 275,463 to 276,533
_00253
Position (kb)
273
274
275 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 272.763 kb on - strand, within OHPLBJKB_00250 at 272.763 kb on - strand, within OHPLBJKB_00250 at 272.765 kb on + strand, within OHPLBJKB_00250 at 272.766 kb on - strand, within OHPLBJKB_00250 at 272.766 kb on - strand, within OHPLBJKB_00250 at 272.796 kb on + strand, within OHPLBJKB_00250 at 272.797 kb on - strand, within OHPLBJKB_00250 at 272.797 kb on - strand, within OHPLBJKB_00250 at 272.840 kb on + strand, within OHPLBJKB_00250 at 272.840 kb on + strand, within OHPLBJKB_00250 at 272.841 kb on - strand, within OHPLBJKB_00250 at 272.841 kb on - strand, within OHPLBJKB_00250 at 273.060 kb on - strand, within OHPLBJKB_00250 at 273.095 kb on + strand, within OHPLBJKB_00250 at 273.096 kb on - strand, within OHPLBJKB_00250 at 273.191 kb on + strand, within OHPLBJKB_00250 at 273.278 kb on + strand, within OHPLBJKB_00250 at 273.279 kb on - strand, within OHPLBJKB_00250 at 273.279 kb on - strand, within OHPLBJKB_00250 at 273.279 kb on - strand, within OHPLBJKB_00250 at 273.281 kb on - strand, within OHPLBJKB_00250 at 273.377 kb on + strand, within OHPLBJKB_00250 at 273.377 kb on + strand, within OHPLBJKB_00250 at 273.378 kb on - strand, within OHPLBJKB_00250 at 273.404 kb on + strand, within OHPLBJKB_00250 at 273.405 kb on - strand, within OHPLBJKB_00250 at 273.641 kb on + strand at 273.642 kb on - strand at 273.642 kb on - strand at 273.662 kb on + strand at 273.731 kb on - strand at 273.774 kb on + strand at 273.775 kb on - strand at 273.775 kb on - strand at 273.846 kb on + strand, within OHPLBJKB_00251 at 273.853 kb on + strand, within OHPLBJKB_00251 at 273.854 kb on - strand, within OHPLBJKB_00251 at 273.903 kb on - strand, within OHPLBJKB_00251 at 273.930 kb on + strand, within OHPLBJKB_00251 at 273.930 kb on + strand, within OHPLBJKB_00251 at 273.931 kb on - strand, within OHPLBJKB_00251 at 273.931 kb on - strand, within OHPLBJKB_00251 at 273.931 kb on - strand, within OHPLBJKB_00251 at 273.931 kb on - strand, within OHPLBJKB_00251 at 273.931 kb on - strand, within OHPLBJKB_00251 at 273.931 kb on - strand, within OHPLBJKB_00251 at 273.931 kb on - strand, within OHPLBJKB_00251 at 273.931 kb on - strand, within OHPLBJKB_00251 at 273.931 kb on - strand, within OHPLBJKB_00251 at 273.933 kb on + strand, within OHPLBJKB_00251 at 273.933 kb on + strand, within OHPLBJKB_00251 at 273.933 kb on + strand, within OHPLBJKB_00251 at 273.933 kb on + strand, within OHPLBJKB_00251 at 273.933 kb on + strand, within OHPLBJKB_00251 at 273.934 kb on - strand, within OHPLBJKB_00251 at 273.958 kb on + strand, within OHPLBJKB_00251 at 274.026 kb on + strand, within OHPLBJKB_00251 at 274.026 kb on + strand, within OHPLBJKB_00251 at 274.026 kb on + strand, within OHPLBJKB_00251 at 274.026 kb on + strand, within OHPLBJKB_00251 at 274.027 kb on - strand, within OHPLBJKB_00251 at 274.027 kb on - strand, within OHPLBJKB_00251 at 274.027 kb on - strand, within OHPLBJKB_00251 at 274.075 kb on - strand, within OHPLBJKB_00251 at 274.228 kb on + strand, within OHPLBJKB_00251 at 274.263 kb on + strand, within OHPLBJKB_00251 at 274.263 kb on + strand, within OHPLBJKB_00251 at 274.264 kb on - strand, within OHPLBJKB_00251 at 274.264 kb on - strand, within OHPLBJKB_00251 at 274.343 kb on + strand, within OHPLBJKB_00251 at 274.404 kb on + strand, within OHPLBJKB_00251 at 274.404 kb on + strand, within OHPLBJKB_00251 at 274.404 kb on + strand, within OHPLBJKB_00251 at 274.404 kb on + strand, within OHPLBJKB_00251 at 274.405 kb on - strand, within OHPLBJKB_00251 at 274.482 kb on + strand, within OHPLBJKB_00251 at 274.482 kb on + strand, within OHPLBJKB_00251 at 274.483 kb on - strand, within OHPLBJKB_00251 at 274.483 kb on - strand, within OHPLBJKB_00251 at 274.484 kb on + strand, within OHPLBJKB_00251 at 274.484 kb on + strand, within OHPLBJKB_00251 at 274.484 kb on + strand, within OHPLBJKB_00251 at 274.590 kb on + strand at 274.591 kb on - strand at 274.654 kb on + strand at 274.698 kb on - strand at 274.739 kb on + strand, within OHPLBJKB_00252 at 274.946 kb on - strand, within OHPLBJKB_00252 at 274.946 kb on - strand, within OHPLBJKB_00252 at 274.946 kb on - strand, within OHPLBJKB_00252 at 274.995 kb on + strand, within OHPLBJKB_00252 at 274.995 kb on + strand, within OHPLBJKB_00252 at 274.996 kb on - strand, within OHPLBJKB_00252 at 274.996 kb on - strand, within OHPLBJKB_00252 at 274.996 kb on - strand, within OHPLBJKB_00252 at 274.996 kb on - strand, within OHPLBJKB_00252 at 274.999 kb on + strand, within OHPLBJKB_00252 at 274.999 kb on + strand, within OHPLBJKB_00252 at 274.999 kb on + strand, within OHPLBJKB_00252 at 275.000 kb on - strand, within OHPLBJKB_00252 at 275.000 kb on - strand, within OHPLBJKB_00252 at 275.000 kb on - strand, within OHPLBJKB_00252 at 275.000 kb on - strand, within OHPLBJKB_00252 at 275.000 kb on - strand, within OHPLBJKB_00252 at 275.000 kb on - strand, within OHPLBJKB_00252 at 275.058 kb on + strand, within OHPLBJKB_00252 at 275.114 kb on - strand, within OHPLBJKB_00252 at 275.239 kb on + strand, within OHPLBJKB_00252 at 275.240 kb on - strand, within OHPLBJKB_00252 at 275.240 kb on - strand, within OHPLBJKB_00252 at 275.240 kb on - strand, within OHPLBJKB_00252 at 275.278 kb on + strand, within OHPLBJKB_00252 at 275.459 kb on + strand at 275.459 kb on + strand at 275.459 kb on + strand at 275.459 kb on + strand at 275.459 kb on + strand at 275.460 kb on - strand at 275.460 kb on - strand at 275.507 kb on + strand at 275.507 kb on + strand at 275.523 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phage Ame 1 remove 272,763 - OHPLBJKB_00250 0.34 +2.8 272,763 - OHPLBJKB_00250 0.34 -0.2 272,765 + OHPLBJKB_00250 0.34 +1.0 272,766 - OHPLBJKB_00250 0.34 -0.5 272,766 - OHPLBJKB_00250 0.34 -0.1 272,796 + OHPLBJKB_00250 0.36 -0.9 272,797 - OHPLBJKB_00250 0.36 +0.4 272,797 - OHPLBJKB_00250 0.36 -0.1 272,840 + OHPLBJKB_00250 0.40 +0.2 272,840 + OHPLBJKB_00250 0.40 -1.0 272,841 - OHPLBJKB_00250 0.40 +0.9 272,841 - OHPLBJKB_00250 0.40 -0.7 273,060 - OHPLBJKB_00250 0.56 +0.1 273,095 + OHPLBJKB_00250 0.59 +0.2 273,096 - OHPLBJKB_00250 0.59 -1.1 273,191 + OHPLBJKB_00250 0.66 -0.2 273,278 + OHPLBJKB_00250 0.73 -1.6 273,279 - OHPLBJKB_00250 0.73 -1.1 273,279 - OHPLBJKB_00250 0.73 +0.8 273,279 - OHPLBJKB_00250 0.73 -0.7 273,281 - OHPLBJKB_00250 0.73 +0.9 273,377 + OHPLBJKB_00250 0.80 +0.1 273,377 + OHPLBJKB_00250 0.80 +0.1 273,378 - OHPLBJKB_00250 0.80 -0.2 273,404 + OHPLBJKB_00250 0.82 -0.5 273,405 - OHPLBJKB_00250 0.83 -0.8 273,641 + -0.3 273,642 - -1.8 273,642 - -0.3 273,662 + +1.3 273,731 - +0.0 273,774 + -1.0 273,775 - +0.2 273,775 - +1.1 273,846 + OHPLBJKB_00251 0.13 -0.2 273,853 + OHPLBJKB_00251 0.14 +0.4 273,854 - OHPLBJKB_00251 0.14 -0.3 273,903 - OHPLBJKB_00251 0.19 +1.0 273,930 + OHPLBJKB_00251 0.22 +1.8 273,930 + OHPLBJKB_00251 0.22 +0.4 273,931 - OHPLBJKB_00251 0.22 -1.1 273,931 - OHPLBJKB_00251 0.22 -0.6 273,931 - OHPLBJKB_00251 0.22 +1.0 273,931 - OHPLBJKB_00251 0.22 -0.8 273,931 - OHPLBJKB_00251 0.22 +0.2 273,931 - OHPLBJKB_00251 0.22 -0.7 273,931 - OHPLBJKB_00251 0.22 +0.7 273,931 - OHPLBJKB_00251 0.22 +1.2 273,931 - OHPLBJKB_00251 0.22 +0.7 273,933 + OHPLBJKB_00251 0.23 -2.1 273,933 + OHPLBJKB_00251 0.23 -0.0 273,933 + OHPLBJKB_00251 0.23 +1.0 273,933 + OHPLBJKB_00251 0.23 +0.1 273,933 + OHPLBJKB_00251 0.23 -1.9 273,934 - OHPLBJKB_00251 0.23 -0.8 273,958 + OHPLBJKB_00251 0.25 -0.3 274,026 + OHPLBJKB_00251 0.33 -0.5 274,026 + OHPLBJKB_00251 0.33 -0.5 274,026 + OHPLBJKB_00251 0.33 -0.3 274,026 + OHPLBJKB_00251 0.33 +0.0 274,027 - OHPLBJKB_00251 0.33 +0.3 274,027 - OHPLBJKB_00251 0.33 +0.6 274,027 - OHPLBJKB_00251 0.33 +0.4 274,075 - OHPLBJKB_00251 0.39 +0.2 274,228 + OHPLBJKB_00251 0.56 -0.8 274,263 + OHPLBJKB_00251 0.60 +1.1 274,263 + OHPLBJKB_00251 0.60 -0.3 274,264 - OHPLBJKB_00251 0.60 +0.1 274,264 - OHPLBJKB_00251 0.60 -0.1 274,343 + OHPLBJKB_00251 0.69 +1.7 274,404 + OHPLBJKB_00251 0.76 -0.9 274,404 + OHPLBJKB_00251 0.76 -1.7 274,404 + OHPLBJKB_00251 0.76 -0.9 274,404 + OHPLBJKB_00251 0.76 +0.7 274,405 - OHPLBJKB_00251 0.76 -1.3 274,482 + OHPLBJKB_00251 0.84 +1.9 274,482 + OHPLBJKB_00251 0.84 +0.0 274,483 - OHPLBJKB_00251 0.85 +0.6 274,483 - OHPLBJKB_00251 0.85 +0.5 274,484 + OHPLBJKB_00251 0.85 +0.4 274,484 + OHPLBJKB_00251 0.85 -1.3 274,484 + OHPLBJKB_00251 0.85 +0.5 274,590 + -1.5 274,591 - +0.4 274,654 + -1.9 274,698 - +0.7 274,739 + OHPLBJKB_00252 0.15 -0.1 274,946 - OHPLBJKB_00252 0.39 +0.8 274,946 - OHPLBJKB_00252 0.39 -0.6 274,946 - OHPLBJKB_00252 0.39 +0.4 274,995 + OHPLBJKB_00252 0.45 +1.0 274,995 + OHPLBJKB_00252 0.45 -0.8 274,996 - OHPLBJKB_00252 0.45 +1.9 274,996 - OHPLBJKB_00252 0.45 +0.4 274,996 - OHPLBJKB_00252 0.45 -1.2 274,996 - OHPLBJKB_00252 0.45 -0.8 274,999 + OHPLBJKB_00252 0.45 +0.2 274,999 + OHPLBJKB_00252 0.45 -0.9 274,999 + OHPLBJKB_00252 0.45 -2.1 275,000 - OHPLBJKB_00252 0.45 -0.1 275,000 - OHPLBJKB_00252 0.45 -0.7 275,000 - OHPLBJKB_00252 0.45 -0.2 275,000 - OHPLBJKB_00252 0.45 +1.1 275,000 - OHPLBJKB_00252 0.45 -1.6 275,000 - OHPLBJKB_00252 0.45 -2.0 275,058 + OHPLBJKB_00252 0.52 -0.3 275,114 - OHPLBJKB_00252 0.59 +2.2 275,239 + OHPLBJKB_00252 0.74 +0.7 275,240 - OHPLBJKB_00252 0.74 -0.7 275,240 - OHPLBJKB_00252 0.74 +0.6 275,240 - OHPLBJKB_00252 0.74 +0.7 275,278 + OHPLBJKB_00252 0.78 -0.8 275,459 + -0.7 275,459 + +0.5 275,459 + +0.2 275,459 + -1.4 275,459 + -0.8 275,460 - +0.5 275,460 - +0.0 275,507 + -0.2 275,507 + -0.1 275,523 - +0.4
Or see this region's nucleotide sequence