Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00251

Experiment: Phage Ame 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00250 and OHPLBJKB_00251 are separated by 97 nucleotidesOHPLBJKB_00251 and OHPLBJKB_00252 overlap by 4 nucleotidesOHPLBJKB_00252 and OHPLBJKB_00253 are separated by 1 nucleotides OHPLBJKB_00250: OHPLBJKB_00250 - sn-glycerol-3-phosphate-binding periplasmic protein UgpB, at 272,318 to 273,634 _00250 OHPLBJKB_00251: OHPLBJKB_00251 - sn-glycerol-3-phosphate transport system permease protein UgpA, at 273,732 to 274,619 _00251 OHPLBJKB_00252: OHPLBJKB_00252 - Lactose transport system permease protein LacG, at 274,616 to 275,461 _00252 OHPLBJKB_00253: OHPLBJKB_00253 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 275,463 to 276,533 _00253 Position (kb) 273 274 275Strain fitness (log2 ratio) -2 -1 0 1 2 3at 272.763 kb on - strand, within OHPLBJKB_00250at 272.763 kb on - strand, within OHPLBJKB_00250at 272.765 kb on + strand, within OHPLBJKB_00250at 272.766 kb on - strand, within OHPLBJKB_00250at 272.766 kb on - strand, within OHPLBJKB_00250at 272.796 kb on + strand, within OHPLBJKB_00250at 272.797 kb on - strand, within OHPLBJKB_00250at 272.797 kb on - strand, within OHPLBJKB_00250at 272.840 kb on + strand, within OHPLBJKB_00250at 272.840 kb on + strand, within OHPLBJKB_00250at 272.841 kb on - strand, within OHPLBJKB_00250at 272.841 kb on - strand, within OHPLBJKB_00250at 273.060 kb on - strand, within OHPLBJKB_00250at 273.095 kb on + strand, within OHPLBJKB_00250at 273.096 kb on - strand, within OHPLBJKB_00250at 273.191 kb on + strand, within OHPLBJKB_00250at 273.278 kb on + strand, within OHPLBJKB_00250at 273.279 kb on - strand, within OHPLBJKB_00250at 273.279 kb on - strand, within OHPLBJKB_00250at 273.279 kb on - strand, within OHPLBJKB_00250at 273.281 kb on - strand, within OHPLBJKB_00250at 273.377 kb on + strand, within OHPLBJKB_00250at 273.377 kb on + strand, within OHPLBJKB_00250at 273.378 kb on - strand, within OHPLBJKB_00250at 273.404 kb on + strand, within OHPLBJKB_00250at 273.405 kb on - strand, within OHPLBJKB_00250at 273.641 kb on + strandat 273.642 kb on - strandat 273.642 kb on - strandat 273.662 kb on + strandat 273.731 kb on - strandat 273.774 kb on + strandat 273.775 kb on - strandat 273.775 kb on - strandat 273.846 kb on + strand, within OHPLBJKB_00251at 273.853 kb on + strand, within OHPLBJKB_00251at 273.854 kb on - strand, within OHPLBJKB_00251at 273.903 kb on - strand, within OHPLBJKB_00251at 273.930 kb on + strand, within OHPLBJKB_00251at 273.930 kb on + strand, within OHPLBJKB_00251at 273.931 kb on - strand, within OHPLBJKB_00251at 273.931 kb on - strand, within OHPLBJKB_00251at 273.931 kb on - strand, within OHPLBJKB_00251at 273.931 kb on - strand, within OHPLBJKB_00251at 273.931 kb on - strand, within OHPLBJKB_00251at 273.931 kb on - strand, within OHPLBJKB_00251at 273.931 kb on - strand, within OHPLBJKB_00251at 273.931 kb on - strand, within OHPLBJKB_00251at 273.931 kb on - strand, within OHPLBJKB_00251at 273.933 kb on + strand, within OHPLBJKB_00251at 273.933 kb on + strand, within OHPLBJKB_00251at 273.933 kb on + strand, within OHPLBJKB_00251at 273.933 kb on + strand, within OHPLBJKB_00251at 273.933 kb on + strand, within OHPLBJKB_00251at 273.934 kb on - strand, within OHPLBJKB_00251at 273.958 kb on + strand, within OHPLBJKB_00251at 274.026 kb on + strand, within OHPLBJKB_00251at 274.026 kb on + strand, within OHPLBJKB_00251at 274.026 kb on + strand, within OHPLBJKB_00251at 274.026 kb on + strand, within OHPLBJKB_00251at 274.027 kb on - strand, within OHPLBJKB_00251at 274.027 kb on - strand, within OHPLBJKB_00251at 274.027 kb on - strand, within OHPLBJKB_00251at 274.075 kb on - strand, within OHPLBJKB_00251at 274.228 kb on + strand, within OHPLBJKB_00251at 274.263 kb on + strand, within OHPLBJKB_00251at 274.263 kb on + strand, within OHPLBJKB_00251at 274.264 kb on - strand, within OHPLBJKB_00251at 274.264 kb on - strand, within OHPLBJKB_00251at 274.343 kb on + strand, within OHPLBJKB_00251at 274.404 kb on + strand, within OHPLBJKB_00251at 274.404 kb on + strand, within OHPLBJKB_00251at 274.404 kb on + strand, within OHPLBJKB_00251at 274.404 kb on + strand, within OHPLBJKB_00251at 274.405 kb on - strand, within OHPLBJKB_00251at 274.482 kb on + strand, within OHPLBJKB_00251at 274.482 kb on + strand, within OHPLBJKB_00251at 274.483 kb on - strand, within OHPLBJKB_00251at 274.483 kb on - strand, within OHPLBJKB_00251at 274.484 kb on + strand, within OHPLBJKB_00251at 274.484 kb on + strand, within OHPLBJKB_00251at 274.484 kb on + strand, within OHPLBJKB_00251at 274.590 kb on + strandat 274.591 kb on - strandat 274.654 kb on + strandat 274.698 kb on - strandat 274.739 kb on + strand, within OHPLBJKB_00252at 274.946 kb on - strand, within OHPLBJKB_00252at 274.946 kb on - strand, within OHPLBJKB_00252at 274.946 kb on - strand, within OHPLBJKB_00252at 274.995 kb on + strand, within OHPLBJKB_00252at 274.995 kb on + strand, within OHPLBJKB_00252at 274.996 kb on - strand, within OHPLBJKB_00252at 274.996 kb on - strand, within OHPLBJKB_00252at 274.996 kb on - strand, within OHPLBJKB_00252at 274.996 kb on - strand, within OHPLBJKB_00252at 274.999 kb on + strand, within OHPLBJKB_00252at 274.999 kb on + strand, within OHPLBJKB_00252at 274.999 kb on + strand, within OHPLBJKB_00252at 275.000 kb on - strand, within OHPLBJKB_00252at 275.000 kb on - strand, within OHPLBJKB_00252at 275.000 kb on - strand, within OHPLBJKB_00252at 275.000 kb on - strand, within OHPLBJKB_00252at 275.000 kb on - strand, within OHPLBJKB_00252at 275.000 kb on - strand, within OHPLBJKB_00252at 275.058 kb on + strand, within OHPLBJKB_00252at 275.114 kb on - strand, within OHPLBJKB_00252at 275.239 kb on + strand, within OHPLBJKB_00252at 275.240 kb on - strand, within OHPLBJKB_00252at 275.240 kb on - strand, within OHPLBJKB_00252at 275.240 kb on - strand, within OHPLBJKB_00252at 275.278 kb on + strand, within OHPLBJKB_00252at 275.459 kb on + strandat 275.459 kb on + strandat 275.459 kb on + strandat 275.459 kb on + strandat 275.459 kb on + strandat 275.460 kb on - strandat 275.460 kb on - strandat 275.507 kb on + strandat 275.507 kb on + strandat 275.523 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phage Ame 1
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272,763 - OHPLBJKB_00250 0.34 +2.8
272,763 - OHPLBJKB_00250 0.34 -0.2
272,765 + OHPLBJKB_00250 0.34 +1.0
272,766 - OHPLBJKB_00250 0.34 -0.5
272,766 - OHPLBJKB_00250 0.34 -0.1
272,796 + OHPLBJKB_00250 0.36 -0.9
272,797 - OHPLBJKB_00250 0.36 +0.4
272,797 - OHPLBJKB_00250 0.36 -0.1
272,840 + OHPLBJKB_00250 0.40 +0.2
272,840 + OHPLBJKB_00250 0.40 -1.0
272,841 - OHPLBJKB_00250 0.40 +0.9
272,841 - OHPLBJKB_00250 0.40 -0.7
273,060 - OHPLBJKB_00250 0.56 +0.1
273,095 + OHPLBJKB_00250 0.59 +0.2
273,096 - OHPLBJKB_00250 0.59 -1.1
273,191 + OHPLBJKB_00250 0.66 -0.2
273,278 + OHPLBJKB_00250 0.73 -1.6
273,279 - OHPLBJKB_00250 0.73 -1.1
273,279 - OHPLBJKB_00250 0.73 +0.8
273,279 - OHPLBJKB_00250 0.73 -0.7
273,281 - OHPLBJKB_00250 0.73 +0.9
273,377 + OHPLBJKB_00250 0.80 +0.1
273,377 + OHPLBJKB_00250 0.80 +0.1
273,378 - OHPLBJKB_00250 0.80 -0.2
273,404 + OHPLBJKB_00250 0.82 -0.5
273,405 - OHPLBJKB_00250 0.83 -0.8
273,641 + -0.3
273,642 - -1.8
273,642 - -0.3
273,662 + +1.3
273,731 - +0.0
273,774 + -1.0
273,775 - +0.2
273,775 - +1.1
273,846 + OHPLBJKB_00251 0.13 -0.2
273,853 + OHPLBJKB_00251 0.14 +0.4
273,854 - OHPLBJKB_00251 0.14 -0.3
273,903 - OHPLBJKB_00251 0.19 +1.0
273,930 + OHPLBJKB_00251 0.22 +1.8
273,930 + OHPLBJKB_00251 0.22 +0.4
273,931 - OHPLBJKB_00251 0.22 -1.1
273,931 - OHPLBJKB_00251 0.22 -0.6
273,931 - OHPLBJKB_00251 0.22 +1.0
273,931 - OHPLBJKB_00251 0.22 -0.8
273,931 - OHPLBJKB_00251 0.22 +0.2
273,931 - OHPLBJKB_00251 0.22 -0.7
273,931 - OHPLBJKB_00251 0.22 +0.7
273,931 - OHPLBJKB_00251 0.22 +1.2
273,931 - OHPLBJKB_00251 0.22 +0.7
273,933 + OHPLBJKB_00251 0.23 -2.1
273,933 + OHPLBJKB_00251 0.23 -0.0
273,933 + OHPLBJKB_00251 0.23 +1.0
273,933 + OHPLBJKB_00251 0.23 +0.1
273,933 + OHPLBJKB_00251 0.23 -1.9
273,934 - OHPLBJKB_00251 0.23 -0.8
273,958 + OHPLBJKB_00251 0.25 -0.3
274,026 + OHPLBJKB_00251 0.33 -0.5
274,026 + OHPLBJKB_00251 0.33 -0.5
274,026 + OHPLBJKB_00251 0.33 -0.3
274,026 + OHPLBJKB_00251 0.33 +0.0
274,027 - OHPLBJKB_00251 0.33 +0.3
274,027 - OHPLBJKB_00251 0.33 +0.6
274,027 - OHPLBJKB_00251 0.33 +0.4
274,075 - OHPLBJKB_00251 0.39 +0.2
274,228 + OHPLBJKB_00251 0.56 -0.8
274,263 + OHPLBJKB_00251 0.60 +1.1
274,263 + OHPLBJKB_00251 0.60 -0.3
274,264 - OHPLBJKB_00251 0.60 +0.1
274,264 - OHPLBJKB_00251 0.60 -0.1
274,343 + OHPLBJKB_00251 0.69 +1.7
274,404 + OHPLBJKB_00251 0.76 -0.9
274,404 + OHPLBJKB_00251 0.76 -1.7
274,404 + OHPLBJKB_00251 0.76 -0.9
274,404 + OHPLBJKB_00251 0.76 +0.7
274,405 - OHPLBJKB_00251 0.76 -1.3
274,482 + OHPLBJKB_00251 0.84 +1.9
274,482 + OHPLBJKB_00251 0.84 +0.0
274,483 - OHPLBJKB_00251 0.85 +0.6
274,483 - OHPLBJKB_00251 0.85 +0.5
274,484 + OHPLBJKB_00251 0.85 +0.4
274,484 + OHPLBJKB_00251 0.85 -1.3
274,484 + OHPLBJKB_00251 0.85 +0.5
274,590 + -1.5
274,591 - +0.4
274,654 + -1.9
274,698 - +0.7
274,739 + OHPLBJKB_00252 0.15 -0.1
274,946 - OHPLBJKB_00252 0.39 +0.8
274,946 - OHPLBJKB_00252 0.39 -0.6
274,946 - OHPLBJKB_00252 0.39 +0.4
274,995 + OHPLBJKB_00252 0.45 +1.0
274,995 + OHPLBJKB_00252 0.45 -0.8
274,996 - OHPLBJKB_00252 0.45 +1.9
274,996 - OHPLBJKB_00252 0.45 +0.4
274,996 - OHPLBJKB_00252 0.45 -1.2
274,996 - OHPLBJKB_00252 0.45 -0.8
274,999 + OHPLBJKB_00252 0.45 +0.2
274,999 + OHPLBJKB_00252 0.45 -0.9
274,999 + OHPLBJKB_00252 0.45 -2.1
275,000 - OHPLBJKB_00252 0.45 -0.1
275,000 - OHPLBJKB_00252 0.45 -0.7
275,000 - OHPLBJKB_00252 0.45 -0.2
275,000 - OHPLBJKB_00252 0.45 +1.1
275,000 - OHPLBJKB_00252 0.45 -1.6
275,000 - OHPLBJKB_00252 0.45 -2.0
275,058 + OHPLBJKB_00252 0.52 -0.3
275,114 - OHPLBJKB_00252 0.59 +2.2
275,239 + OHPLBJKB_00252 0.74 +0.7
275,240 - OHPLBJKB_00252 0.74 -0.7
275,240 - OHPLBJKB_00252 0.74 +0.6
275,240 - OHPLBJKB_00252 0.74 +0.7
275,278 + OHPLBJKB_00252 0.78 -0.8
275,459 + -0.7
275,459 + +0.5
275,459 + +0.2
275,459 + -1.4
275,459 + -0.8
275,460 - +0.5
275,460 - +0.0
275,507 + -0.2
275,507 + -0.1
275,523 - +0.4

Or see this region's nucleotide sequence