Experiment: Phage Ame 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00076 and OHPLBJKB_00077 are separated by 84 nucleotides OHPLBJKB_00077 and OHPLBJKB_00078 are separated by 45 nucleotides
OHPLBJKB_00076: OHPLBJKB_00076 - General stress protein A, at 78,934 to 79,959
_00076
OHPLBJKB_00077: OHPLBJKB_00077 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 80,044 to 81,027
_00077
OHPLBJKB_00078: OHPLBJKB_00078 - O-antigen ligase, at 81,073 to 82,326
_00078
Position (kb) 80
81
82 Strain fitness (log2 ratio) -2
-1
0
1 at 79.056 kb on + strand, within OHPLBJKB_00076 at 79.056 kb on + strand, within OHPLBJKB_00076 at 79.329 kb on + strand, within OHPLBJKB_00076 at 79.389 kb on + strand, within OHPLBJKB_00076 at 79.407 kb on + strand, within OHPLBJKB_00076 at 79.478 kb on + strand, within OHPLBJKB_00076 at 79.479 kb on - strand, within OHPLBJKB_00076 at 79.533 kb on + strand, within OHPLBJKB_00076 at 79.565 kb on - strand, within OHPLBJKB_00076 at 79.795 kb on + strand, within OHPLBJKB_00076 at 79.864 kb on + strand at 79.865 kb on - strand at 80.307 kb on + strand, within OHPLBJKB_00077 at 80.317 kb on - strand, within OHPLBJKB_00077 at 80.344 kb on - strand, within OHPLBJKB_00077 at 80.363 kb on - strand, within OHPLBJKB_00077 at 80.440 kb on + strand, within OHPLBJKB_00077 at 80.450 kb on + strand, within OHPLBJKB_00077 at 80.463 kb on + strand, within OHPLBJKB_00077 at 80.516 kb on + strand, within OHPLBJKB_00077 at 80.635 kb on + strand, within OHPLBJKB_00077 at 80.651 kb on - strand, within OHPLBJKB_00077 at 80.766 kb on - strand, within OHPLBJKB_00077 at 81.320 kb on - strand, within OHPLBJKB_00078 at 81.340 kb on + strand, within OHPLBJKB_00078 at 81.523 kb on + strand, within OHPLBJKB_00078 at 81.651 kb on - strand, within OHPLBJKB_00078 at 81.654 kb on + strand, within OHPLBJKB_00078 at 81.693 kb on - strand, within OHPLBJKB_00078 at 81.824 kb on + strand, within OHPLBJKB_00078 at 81.867 kb on - strand, within OHPLBJKB_00078 at 81.935 kb on - strand, within OHPLBJKB_00078
Per-strain Table
Position Strand Gene LocusTag Fraction Phage Ame 1 remove 79,056 + OHPLBJKB_00076 0.12 -0.1 79,056 + OHPLBJKB_00076 0.12 -1.5 79,329 + OHPLBJKB_00076 0.38 -1.0 79,389 + OHPLBJKB_00076 0.44 -2.5 79,407 + OHPLBJKB_00076 0.46 -1.3 79,478 + OHPLBJKB_00076 0.53 -1.2 79,479 - OHPLBJKB_00076 0.53 +1.2 79,533 + OHPLBJKB_00076 0.58 -1.1 79,565 - OHPLBJKB_00076 0.62 -0.1 79,795 + OHPLBJKB_00076 0.84 -1.2 79,864 + -1.2 79,865 - -1.6 80,307 + OHPLBJKB_00077 0.27 -0.1 80,317 - OHPLBJKB_00077 0.28 -1.4 80,344 - OHPLBJKB_00077 0.30 -0.4 80,363 - OHPLBJKB_00077 0.32 -0.2 80,440 + OHPLBJKB_00077 0.40 +0.2 80,450 + OHPLBJKB_00077 0.41 -1.1 80,463 + OHPLBJKB_00077 0.43 -1.6 80,516 + OHPLBJKB_00077 0.48 -1.3 80,635 + OHPLBJKB_00077 0.60 -0.6 80,651 - OHPLBJKB_00077 0.62 -1.7 80,766 - OHPLBJKB_00077 0.73 -1.6 81,320 - OHPLBJKB_00078 0.20 -0.4 81,340 + OHPLBJKB_00078 0.21 -0.1 81,523 + OHPLBJKB_00078 0.36 -0.2 81,651 - OHPLBJKB_00078 0.46 -1.4 81,654 + OHPLBJKB_00078 0.46 +0.4 81,693 - OHPLBJKB_00078 0.49 -1.2 81,824 + OHPLBJKB_00078 0.60 -1.1 81,867 - OHPLBJKB_00078 0.63 -1.6 81,935 - OHPLBJKB_00078 0.69 -0.2
Or see this region's nucleotide sequence