Strain Fitness in Escherichia coli ECRC62 around BNILDI_08050

Experiment: Control_ECRC62

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdeoB and deoD are separated by 79 nucleotidesdeoD and BNILDI_08055 are separated by 274 nucleotidesBNILDI_08055 and lplA are separated by 31 nucleotides BNILDI_08045: deoB - phosphopentomutase, at 1,606,480 to 1,607,703 deoB BNILDI_08050: deoD - purine-nucleoside phosphorylase, at 1,607,783 to 1,608,502 deoD BNILDI_08055: BNILDI_08055 - Lipoate-protein ligase A, at 1,608,777 to 1,608,926 _08055 BNILDI_08060: lplA - lipoate--protein ligase LplA, at 1,608,958 to 1,609,974 lplA Position (kb) 1607 1608 1609Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1606.826 kb on - strand, within deoBat 1606.984 kb on + strand, within deoBat 1606.984 kb on + strand, within deoBat 1607.095 kb on + strand, within deoBat 1607.096 kb on - strand, within deoBat 1607.269 kb on + strand, within deoBat 1607.269 kb on + strand, within deoBat 1607.269 kb on + strand, within deoBat 1607.637 kb on + strandat 1607.667 kb on + strandat 1607.770 kb on + strandat 1607.771 kb on - strandat 1607.800 kb on + strandat 1607.801 kb on - strandat 1607.801 kb on - strandat 1607.829 kb on + strandat 1607.864 kb on + strand, within deoDat 1607.865 kb on - strand, within deoDat 1607.865 kb on - strand, within deoDat 1607.865 kb on - strand, within deoDat 1607.865 kb on - strand, within deoDat 1607.866 kb on + strand, within deoDat 1607.867 kb on - strand, within deoDat 1607.867 kb on - strand, within deoDat 1607.939 kb on + strand, within deoDat 1607.939 kb on + strand, within deoDat 1607.999 kb on + strand, within deoDat 1608.079 kb on - strand, within deoDat 1608.341 kb on + strand, within deoDat 1608.500 kb on + strandat 1608.501 kb on - strandat 1608.567 kb on + strandat 1608.568 kb on - strandat 1608.571 kb on + strandat 1608.572 kb on - strandat 1608.594 kb on - strandat 1608.696 kb on + strandat 1608.885 kb on + strand, within BNILDI_08055at 1608.886 kb on - strand, within BNILDI_08055at 1608.888 kb on - strand, within BNILDI_08055at 1608.888 kb on - strand, within BNILDI_08055at 1608.893 kb on + strand, within BNILDI_08055at 1608.926 kb on + strandat 1609.057 kb on - strandat 1609.327 kb on + strand, within lplAat 1609.440 kb on + strand, within lplA

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC62
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1,606,826 - deoB BNILDI_08045 0.28 +3.6
1,606,984 + deoB BNILDI_08045 0.41 -0.0
1,606,984 + deoB BNILDI_08045 0.41 -0.5
1,607,095 + deoB BNILDI_08045 0.50 +0.7
1,607,096 - deoB BNILDI_08045 0.50 +1.0
1,607,269 + deoB BNILDI_08045 0.64 +0.1
1,607,269 + deoB BNILDI_08045 0.64 +0.3
1,607,269 + deoB BNILDI_08045 0.64 -2.1
1,607,637 + +0.4
1,607,667 + +0.5
1,607,770 + +1.0
1,607,771 - +2.7
1,607,800 + -0.8
1,607,801 - -1.3
1,607,801 - -4.2
1,607,829 + -1.0
1,607,864 + deoD BNILDI_08050 0.11 -0.1
1,607,865 - deoD BNILDI_08050 0.11 -0.4
1,607,865 - deoD BNILDI_08050 0.11 -1.3
1,607,865 - deoD BNILDI_08050 0.11 +0.4
1,607,865 - deoD BNILDI_08050 0.11 +2.1
1,607,866 + deoD BNILDI_08050 0.12 +0.2
1,607,867 - deoD BNILDI_08050 0.12 +0.1
1,607,867 - deoD BNILDI_08050 0.12 -0.5
1,607,939 + deoD BNILDI_08050 0.22 +0.3
1,607,939 + deoD BNILDI_08050 0.22 +0.0
1,607,999 + deoD BNILDI_08050 0.30 -0.2
1,608,079 - deoD BNILDI_08050 0.41 -0.2
1,608,341 + deoD BNILDI_08050 0.78 +0.3
1,608,500 + -0.6
1,608,501 - -1.1
1,608,567 + -1.1
1,608,568 - -1.1
1,608,571 + +0.4
1,608,572 - +0.1
1,608,594 - -0.1
1,608,696 + +0.1
1,608,885 + BNILDI_08055 0.72 -0.2
1,608,886 - BNILDI_08055 0.73 +0.2
1,608,888 - BNILDI_08055 0.74 -0.2
1,608,888 - BNILDI_08055 0.74 -0.1
1,608,893 + BNILDI_08055 0.77 -0.3
1,608,926 + +0.2
1,609,057 - +0.3
1,609,327 + lplA BNILDI_08060 0.36 -0.5
1,609,440 + lplA BNILDI_08060 0.47 -0.0

Or see this region's nucleotide sequence