Experiment: Control_ECRC62
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fkpA and slyX are separated by 220 nucleotides slyX and slyD are separated by 48 nucleotides slyD and yheV are separated by 94 nucleotides yheV and kefB are separated by 9 nucleotides
BNILDI_02425: fkpA - FKBP-type peptidyl-prolyl cis-trans isomerase, at 458,578 to 459,390
fkpA
BNILDI_02430: slyX - Protein SlyX, at 459,611 to 459,829
slyX
BNILDI_02435: slyD - peptidylprolyl isomerase, at 459,878 to 460,468
slyD
BNILDI_02440: yheV - Uncharacterized protein YheV, at 460,563 to 460,763
yheV
BNILDI_02445: kefB - glutathione-regulated potassium-efflux system protein KefB, at 460,773 to 462,578
kefB
Position (kb) 459
460
461 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 458.879 kb on + strand, within fkpA at 458.880 kb on - strand, within fkpA at 458.880 kb on - strand, within fkpA at 458.880 kb on - strand, within fkpA at 458.932 kb on + strand, within fkpA at 458.932 kb on + strand, within fkpA at 458.933 kb on - strand, within fkpA at 458.933 kb on - strand, within fkpA at 458.935 kb on + strand, within fkpA at 458.936 kb on - strand, within fkpA at 458.942 kb on + strand, within fkpA at 458.999 kb on + strand, within fkpA at 459.124 kb on - strand, within fkpA at 459.216 kb on - strand, within fkpA at 459.376 kb on - strand at 459.394 kb on + strand at 459.394 kb on + strand at 459.427 kb on + strand at 459.427 kb on + strand at 459.432 kb on - strand at 459.432 kb on - strand at 459.432 kb on - strand at 459.448 kb on + strand at 459.448 kb on + strand at 459.451 kb on - strand at 459.476 kb on - strand at 459.476 kb on - strand at 459.476 kb on - strand at 459.476 kb on - strand at 459.488 kb on + strand at 459.488 kb on + strand at 459.492 kb on - strand at 459.492 kb on - strand at 459.492 kb on - strand at 459.499 kb on - strand at 459.499 kb on - strand at 459.519 kb on + strand at 459.524 kb on + strand at 459.525 kb on - strand at 459.525 kb on - strand at 459.570 kb on - strand at 459.574 kb on - strand at 459.622 kb on - strand at 459.622 kb on - strand at 459.908 kb on - strand at 460.189 kb on + strand, within slyD at 460.190 kb on - strand, within slyD at 460.190 kb on - strand, within slyD at 460.193 kb on + strand, within slyD at 460.193 kb on + strand, within slyD at 460.193 kb on + strand, within slyD at 460.194 kb on - strand, within slyD at 460.221 kb on - strand, within slyD at 460.221 kb on - strand, within slyD at 460.221 kb on - strand, within slyD at 460.228 kb on + strand, within slyD at 460.229 kb on - strand, within slyD at 460.369 kb on - strand, within slyD at 460.420 kb on + strand at 460.420 kb on + strand at 460.421 kb on - strand at 460.421 kb on - strand at 460.424 kb on + strand at 460.424 kb on + strand at 460.424 kb on + strand at 460.424 kb on + strand at 460.424 kb on + strand at 460.431 kb on + strand at 460.471 kb on + strand at 460.471 kb on + strand at 460.677 kb on - strand, within yheV at 460.679 kb on + strand, within yheV at 460.768 kb on - strand at 460.902 kb on + strand at 461.099 kb on + strand, within kefB at 461.168 kb on + strand, within kefB at 461.169 kb on - strand, within kefB at 461.169 kb on - strand, within kefB at 461.237 kb on - strand, within kefB at 461.254 kb on + strand, within kefB at 461.254 kb on + strand, within kefB at 461.301 kb on - strand, within kefB at 461.448 kb on - strand, within kefB
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC62 remove 458,879 + fkpA BNILDI_02425 0.37 +1.0 458,880 - fkpA BNILDI_02425 0.37 +0.2 458,880 - fkpA BNILDI_02425 0.37 -1.5 458,880 - fkpA BNILDI_02425 0.37 +0.9 458,932 + fkpA BNILDI_02425 0.44 +0.1 458,932 + fkpA BNILDI_02425 0.44 +1.9 458,933 - fkpA BNILDI_02425 0.44 -0.7 458,933 - fkpA BNILDI_02425 0.44 -0.1 458,935 + fkpA BNILDI_02425 0.44 +0.4 458,936 - fkpA BNILDI_02425 0.44 -0.8 458,942 + fkpA BNILDI_02425 0.45 -0.2 458,999 + fkpA BNILDI_02425 0.52 -0.6 459,124 - fkpA BNILDI_02425 0.67 +0.6 459,216 - fkpA BNILDI_02425 0.78 +0.6 459,376 - -0.4 459,394 + -0.5 459,394 + -2.4 459,427 + +0.4 459,427 + -0.6 459,432 - +1.2 459,432 - -0.3 459,432 - +0.1 459,448 + -0.3 459,448 + +1.5 459,451 - +1.2 459,476 - -3.9 459,476 - -0.6 459,476 - +1.4 459,476 - +0.5 459,488 + -1.1 459,488 + -0.9 459,492 - -1.0 459,492 - -0.8 459,492 - +0.3 459,499 - -1.1 459,499 - +0.1 459,519 + -0.3 459,524 + +0.5 459,525 - -0.6 459,525 - +1.2 459,570 - -1.3 459,574 - +0.2 459,622 - -0.2 459,622 - -2.0 459,908 - +0.2 460,189 + slyD BNILDI_02435 0.53 +0.4 460,190 - slyD BNILDI_02435 0.53 -1.4 460,190 - slyD BNILDI_02435 0.53 -0.7 460,193 + slyD BNILDI_02435 0.53 -1.2 460,193 + slyD BNILDI_02435 0.53 -1.9 460,193 + slyD BNILDI_02435 0.53 -0.7 460,194 - slyD BNILDI_02435 0.53 -1.5 460,221 - slyD BNILDI_02435 0.58 -0.5 460,221 - slyD BNILDI_02435 0.58 -0.2 460,221 - slyD BNILDI_02435 0.58 -0.7 460,228 + slyD BNILDI_02435 0.59 -1.0 460,229 - slyD BNILDI_02435 0.59 +0.1 460,369 - slyD BNILDI_02435 0.83 +0.9 460,420 + -0.1 460,420 + -1.0 460,421 - -2.0 460,421 - -0.6 460,424 + -0.7 460,424 + +0.1 460,424 + -0.2 460,424 + -0.3 460,424 + -1.1 460,431 + -0.4 460,471 + -0.7 460,471 + -1.3 460,677 - yheV BNILDI_02440 0.57 +0.6 460,679 + yheV BNILDI_02440 0.58 +0.8 460,768 - -0.6 460,902 + +0.0 461,099 + kefB BNILDI_02445 0.18 -0.1 461,168 + kefB BNILDI_02445 0.22 +1.2 461,169 - kefB BNILDI_02445 0.22 -0.4 461,169 - kefB BNILDI_02445 0.22 -0.5 461,237 - kefB BNILDI_02445 0.26 +0.5 461,254 + kefB BNILDI_02445 0.27 +1.0 461,254 + kefB BNILDI_02445 0.27 +0.4 461,301 - kefB BNILDI_02445 0.29 +1.6 461,448 - kefB BNILDI_02445 0.37 -0.3
Or see this region's nucleotide sequence