Experiment: Control_ECRC62
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_00510 and BNILDI_00515 are separated by 267 nucleotides BNILDI_00515 and BNILDI_00520 overlap by 44 nucleotides BNILDI_00520 and BNILDI_00525 are separated by 293 nucleotides BNILDI_00525 and BNILDI_00530 are separated by 71 nucleotides BNILDI_00530 and BNILDI_00535 overlap by 4 nucleotides
BNILDI_00510: BNILDI_00510 - inovirus Gp2 family protein, at 97,188 to 97,919
_00510
BNILDI_00515: BNILDI_00515 - HTH domain-containing protein, at 98,187 to 98,411
_00515
BNILDI_00520: BNILDI_00520 - DUF5983 domain-containing protein, at 98,368 to 98,538
_00520
BNILDI_00525: BNILDI_00525 - restriction endonuclease subunit M, at 98,832 to 99,698
_00525
BNILDI_00530: BNILDI_00530 - type II toxin-antitoxin system ParD family antitoxin, at 99,770 to 100,033
_00530
BNILDI_00535: BNILDI_00535 - type II toxin-antitoxin system RelE/ParE family toxin, at 100,030 to 100,356
_00535
Position (kb) 98
99
100 Strain fitness (log2 ratio) -1
0
1
2 at 97.894 kb on + strand at 98.066 kb on - strand at 98.186 kb on + strand at 98.187 kb on - strand at 98.187 kb on - strand at 98.241 kb on - strand, within BNILDI_00515 at 98.304 kb on - strand, within BNILDI_00515 at 98.312 kb on + strand, within BNILDI_00515 at 98.313 kb on - strand, within BNILDI_00515 at 98.317 kb on + strand, within BNILDI_00515 at 98.318 kb on - strand, within BNILDI_00515 at 98.560 kb on + strand at 98.609 kb on + strand at 98.651 kb on + strand at 98.709 kb on - strand at 98.809 kb on - strand at 98.832 kb on - strand at 98.885 kb on + strand at 98.930 kb on + strand, within BNILDI_00525 at 98.930 kb on + strand, within BNILDI_00525 at 98.954 kb on + strand, within BNILDI_00525 at 99.173 kb on + strand, within BNILDI_00525 at 99.402 kb on - strand, within BNILDI_00525 at 99.450 kb on + strand, within BNILDI_00525 at 99.450 kb on + strand, within BNILDI_00525 at 99.450 kb on + strand, within BNILDI_00525 at 99.451 kb on - strand, within BNILDI_00525 at 99.543 kb on + strand, within BNILDI_00525 at 99.544 kb on - strand, within BNILDI_00525 at 99.570 kb on + strand, within BNILDI_00525 at 99.571 kb on - strand, within BNILDI_00525 at 99.636 kb on - strand at 99.636 kb on - strand at 99.638 kb on + strand at 99.711 kb on - strand at 99.976 kb on - strand, within BNILDI_00530 at 99.999 kb on - strand, within BNILDI_00530 at 100.076 kb on + strand, within BNILDI_00535 at 100.077 kb on - strand, within BNILDI_00535 at 100.194 kb on - strand, within BNILDI_00535 at 100.275 kb on + strand, within BNILDI_00535 at 100.275 kb on + strand, within BNILDI_00535 at 100.276 kb on - strand, within BNILDI_00535 at 100.308 kb on - strand, within BNILDI_00535 at 100.407 kb on - strand at 100.497 kb on + strand at 100.497 kb on + strand at 100.500 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC62 remove 97,894 + +0.7 98,066 - -1.4 98,186 + -0.1 98,187 - +1.7 98,187 - +2.0 98,241 - BNILDI_00515 0.24 +0.4 98,304 - BNILDI_00515 0.52 +1.5 98,312 + BNILDI_00515 0.56 +0.1 98,313 - BNILDI_00515 0.56 -0.4 98,317 + BNILDI_00515 0.58 -0.5 98,318 - BNILDI_00515 0.58 +0.3 98,560 + +0.8 98,609 + +0.2 98,651 + -0.3 98,709 - +0.1 98,809 - +0.1 98,832 - -0.5 98,885 + -0.6 98,930 + BNILDI_00525 0.11 +0.4 98,930 + BNILDI_00525 0.11 +0.1 98,954 + BNILDI_00525 0.14 +0.1 99,173 + BNILDI_00525 0.39 -0.2 99,402 - BNILDI_00525 0.66 +1.1 99,450 + BNILDI_00525 0.71 -1.5 99,450 + BNILDI_00525 0.71 +1.4 99,450 + BNILDI_00525 0.71 -0.1 99,451 - BNILDI_00525 0.71 +0.3 99,543 + BNILDI_00525 0.82 -1.0 99,544 - BNILDI_00525 0.82 +0.6 99,570 + BNILDI_00525 0.85 +0.9 99,571 - BNILDI_00525 0.85 -0.2 99,636 - +0.5 99,636 - +1.0 99,638 + -0.4 99,711 - -0.3 99,976 - BNILDI_00530 0.78 -0.4 99,999 - BNILDI_00530 0.87 -0.5 100,076 + BNILDI_00535 0.14 +0.3 100,077 - BNILDI_00535 0.14 +1.8 100,194 - BNILDI_00535 0.50 -0.8 100,275 + BNILDI_00535 0.75 -0.6 100,275 + BNILDI_00535 0.75 -0.0 100,276 - BNILDI_00535 0.75 +1.3 100,308 - BNILDI_00535 0.85 +1.4 100,407 - +0.2 100,497 + -0.0 100,497 + -0.5 100,500 - +0.8
Or see this region's nucleotide sequence