Experiment: Control_ECRC62
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mhpA and mhpR are separated by 76 nucleotides mhpR and lacI are separated by 67 nucleotides
BNILDI_23110: mhpA - bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase, at 4,651,623 to 4,653,287
mhpA
BNILDI_23115: mhpR - DNA-binding transcriptional regulator, at 4,653,364 to 4,654,311
mhpR
BNILDI_23120: lacI - DNA-binding transcriptional repressor LacI, at 4,654,379 to 4,655,470
lacI
Position (kb) 4653
4654
4655 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4652.365 kb on + strand, within mhpA at 4652.366 kb on - strand, within mhpA at 4652.465 kb on - strand, within mhpA at 4652.532 kb on - strand, within mhpA at 4652.624 kb on - strand, within mhpA at 4652.650 kb on + strand, within mhpA at 4652.650 kb on + strand, within mhpA at 4652.651 kb on - strand, within mhpA at 4652.651 kb on - strand, within mhpA at 4652.651 kb on - strand, within mhpA at 4652.651 kb on - strand, within mhpA at 4652.651 kb on - strand, within mhpA at 4652.651 kb on - strand, within mhpA at 4652.651 kb on - strand, within mhpA at 4652.651 kb on - strand, within mhpA at 4652.654 kb on + strand, within mhpA at 4652.663 kb on + strand, within mhpA at 4652.663 kb on + strand, within mhpA at 4652.664 kb on - strand, within mhpA at 4652.945 kb on + strand, within mhpA at 4653.048 kb on - strand, within mhpA at 4653.190 kb on + strand at 4653.245 kb on + strand at 4653.246 kb on - strand at 4653.387 kb on + strand at 4653.533 kb on + strand, within mhpR at 4653.655 kb on + strand, within mhpR at 4653.713 kb on + strand, within mhpR at 4654.003 kb on + strand, within mhpR at 4654.004 kb on - strand, within mhpR at 4654.114 kb on - strand, within mhpR at 4654.168 kb on + strand, within mhpR at 4654.168 kb on + strand, within mhpR at 4654.169 kb on - strand, within mhpR at 4654.169 kb on - strand, within mhpR at 4654.169 kb on - strand, within mhpR at 4654.170 kb on + strand, within mhpR at 4654.407 kb on - strand at 4654.436 kb on + strand at 4654.527 kb on - strand, within lacI at 4654.527 kb on - strand, within lacI at 4654.636 kb on + strand, within lacI at 4654.684 kb on - strand, within lacI at 4654.709 kb on - strand, within lacI at 4654.760 kb on - strand, within lacI at 4654.864 kb on + strand, within lacI at 4654.865 kb on - strand, within lacI at 4654.865 kb on - strand, within lacI at 4654.993 kb on + strand, within lacI at 4654.997 kb on + strand, within lacI at 4654.997 kb on + strand, within lacI at 4655.233 kb on + strand, within lacI
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC62 remove 4,652,365 + mhpA BNILDI_23110 0.45 +0.7 4,652,366 - mhpA BNILDI_23110 0.45 +1.1 4,652,465 - mhpA BNILDI_23110 0.51 -0.0 4,652,532 - mhpA BNILDI_23110 0.55 +0.7 4,652,624 - mhpA BNILDI_23110 0.60 +0.2 4,652,650 + mhpA BNILDI_23110 0.62 -0.1 4,652,650 + mhpA BNILDI_23110 0.62 +0.5 4,652,651 - mhpA BNILDI_23110 0.62 -0.1 4,652,651 - mhpA BNILDI_23110 0.62 -0.4 4,652,651 - mhpA BNILDI_23110 0.62 +0.6 4,652,651 - mhpA BNILDI_23110 0.62 +2.3 4,652,651 - mhpA BNILDI_23110 0.62 +0.9 4,652,651 - mhpA BNILDI_23110 0.62 -0.9 4,652,651 - mhpA BNILDI_23110 0.62 +1.1 4,652,651 - mhpA BNILDI_23110 0.62 -2.7 4,652,654 + mhpA BNILDI_23110 0.62 +1.5 4,652,663 + mhpA BNILDI_23110 0.62 -1.8 4,652,663 + mhpA BNILDI_23110 0.62 -0.6 4,652,664 - mhpA BNILDI_23110 0.63 +0.6 4,652,945 + mhpA BNILDI_23110 0.79 +1.5 4,653,048 - mhpA BNILDI_23110 0.86 +0.2 4,653,190 + +1.6 4,653,245 + +0.0 4,653,246 - +1.0 4,653,387 + +0.1 4,653,533 + mhpR BNILDI_23115 0.18 -0.3 4,653,655 + mhpR BNILDI_23115 0.31 -3.5 4,653,713 + mhpR BNILDI_23115 0.37 -0.4 4,654,003 + mhpR BNILDI_23115 0.67 -1.3 4,654,004 - mhpR BNILDI_23115 0.68 -1.3 4,654,114 - mhpR BNILDI_23115 0.79 -0.2 4,654,168 + mhpR BNILDI_23115 0.85 -1.5 4,654,168 + mhpR BNILDI_23115 0.85 +0.6 4,654,169 - mhpR BNILDI_23115 0.85 -1.0 4,654,169 - mhpR BNILDI_23115 0.85 +1.3 4,654,169 - mhpR BNILDI_23115 0.85 -0.1 4,654,170 + mhpR BNILDI_23115 0.85 +2.0 4,654,407 - +0.1 4,654,436 + -1.4 4,654,527 - lacI BNILDI_23120 0.14 -2.5 4,654,527 - lacI BNILDI_23120 0.14 +0.9 4,654,636 + lacI BNILDI_23120 0.24 +0.4 4,654,684 - lacI BNILDI_23120 0.28 +0.2 4,654,709 - lacI BNILDI_23120 0.30 +0.2 4,654,760 - lacI BNILDI_23120 0.35 +0.5 4,654,864 + lacI BNILDI_23120 0.44 -0.3 4,654,865 - lacI BNILDI_23120 0.45 -0.6 4,654,865 - lacI BNILDI_23120 0.45 -1.1 4,654,993 + lacI BNILDI_23120 0.56 +1.2 4,654,997 + lacI BNILDI_23120 0.57 +0.9 4,654,997 + lacI BNILDI_23120 0.57 +0.5 4,655,233 + lacI BNILDI_23120 0.78 +0.9
Or see this region's nucleotide sequence