Experiment: Control_ECRC62
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mhpC and mhpB are separated by 17 nucleotides mhpB and mhpA are separated by 1 nucleotides mhpA and mhpR are separated by 76 nucleotides
BNILDI_23100: mhpC - 2-hydroxy-6-oxonona-2,4-dienedioate hydrolase, at 4,649,793 to 4,650,659
mhpC
BNILDI_23105: mhpB - 3-carboxyethylcatechol 2,3-dioxygenase, at 4,650,677 to 4,651,621
mhpB
BNILDI_23110: mhpA - bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase, at 4,651,623 to 4,653,287
mhpA
BNILDI_23115: mhpR - DNA-binding transcriptional regulator, at 4,653,364 to 4,654,311
mhpR
Position (kb) 4651
4652
4653
4654 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4650.653 kb on - strand at 4650.675 kb on - strand at 4650.675 kb on - strand at 4650.742 kb on - strand at 4650.872 kb on + strand, within mhpB at 4651.292 kb on - strand, within mhpB at 4651.292 kb on - strand, within mhpB at 4651.292 kb on - strand, within mhpB at 4651.296 kb on + strand, within mhpB at 4651.297 kb on - strand, within mhpB at 4651.447 kb on - strand, within mhpB at 4651.461 kb on + strand, within mhpB at 4651.611 kb on + strand at 4651.787 kb on + strand at 4651.847 kb on + strand, within mhpA at 4652.030 kb on + strand, within mhpA at 4652.031 kb on - strand, within mhpA at 4652.128 kb on + strand, within mhpA at 4652.178 kb on + strand, within mhpA at 4652.178 kb on + strand, within mhpA at 4652.179 kb on - strand, within mhpA at 4652.184 kb on - strand, within mhpA at 4652.275 kb on + strand, within mhpA at 4652.365 kb on + strand, within mhpA at 4652.366 kb on - strand, within mhpA at 4652.465 kb on - strand, within mhpA at 4652.532 kb on - strand, within mhpA at 4652.624 kb on - strand, within mhpA at 4652.650 kb on + strand, within mhpA at 4652.650 kb on + strand, within mhpA at 4652.651 kb on - strand, within mhpA at 4652.651 kb on - strand, within mhpA at 4652.651 kb on - strand, within mhpA at 4652.651 kb on - strand, within mhpA at 4652.651 kb on - strand, within mhpA at 4652.651 kb on - strand, within mhpA at 4652.651 kb on - strand, within mhpA at 4652.651 kb on - strand, within mhpA at 4652.654 kb on + strand, within mhpA at 4652.663 kb on + strand, within mhpA at 4652.663 kb on + strand, within mhpA at 4652.664 kb on - strand, within mhpA at 4652.945 kb on + strand, within mhpA at 4653.048 kb on - strand, within mhpA at 4653.190 kb on + strand at 4653.245 kb on + strand at 4653.246 kb on - strand at 4653.387 kb on + strand at 4653.533 kb on + strand, within mhpR at 4653.655 kb on + strand, within mhpR at 4653.713 kb on + strand, within mhpR at 4654.003 kb on + strand, within mhpR at 4654.004 kb on - strand, within mhpR at 4654.114 kb on - strand, within mhpR at 4654.168 kb on + strand, within mhpR at 4654.168 kb on + strand, within mhpR at 4654.169 kb on - strand, within mhpR at 4654.169 kb on - strand, within mhpR at 4654.169 kb on - strand, within mhpR at 4654.170 kb on + strand, within mhpR
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC62 remove 4,650,653 - +0.6 4,650,675 - -2.2 4,650,675 - -0.9 4,650,742 - -0.7 4,650,872 + mhpB BNILDI_23105 0.21 -1.3 4,651,292 - mhpB BNILDI_23105 0.65 +0.1 4,651,292 - mhpB BNILDI_23105 0.65 +0.1 4,651,292 - mhpB BNILDI_23105 0.65 -1.8 4,651,296 + mhpB BNILDI_23105 0.66 +0.2 4,651,297 - mhpB BNILDI_23105 0.66 -0.4 4,651,447 - mhpB BNILDI_23105 0.81 -1.2 4,651,461 + mhpB BNILDI_23105 0.83 +0.5 4,651,611 + -1.7 4,651,787 + -1.2 4,651,847 + mhpA BNILDI_23110 0.13 -2.3 4,652,030 + mhpA BNILDI_23110 0.24 -1.0 4,652,031 - mhpA BNILDI_23110 0.25 -0.2 4,652,128 + mhpA BNILDI_23110 0.30 -0.6 4,652,178 + mhpA BNILDI_23110 0.33 +0.1 4,652,178 + mhpA BNILDI_23110 0.33 -1.8 4,652,179 - mhpA BNILDI_23110 0.33 +0.5 4,652,184 - mhpA BNILDI_23110 0.34 -0.1 4,652,275 + mhpA BNILDI_23110 0.39 +0.0 4,652,365 + mhpA BNILDI_23110 0.45 +0.7 4,652,366 - mhpA BNILDI_23110 0.45 +1.1 4,652,465 - mhpA BNILDI_23110 0.51 -0.0 4,652,532 - mhpA BNILDI_23110 0.55 +0.7 4,652,624 - mhpA BNILDI_23110 0.60 +0.2 4,652,650 + mhpA BNILDI_23110 0.62 -0.1 4,652,650 + mhpA BNILDI_23110 0.62 +0.5 4,652,651 - mhpA BNILDI_23110 0.62 -0.1 4,652,651 - mhpA BNILDI_23110 0.62 -0.4 4,652,651 - mhpA BNILDI_23110 0.62 +0.6 4,652,651 - mhpA BNILDI_23110 0.62 +2.3 4,652,651 - mhpA BNILDI_23110 0.62 +0.9 4,652,651 - mhpA BNILDI_23110 0.62 -0.9 4,652,651 - mhpA BNILDI_23110 0.62 +1.1 4,652,651 - mhpA BNILDI_23110 0.62 -2.7 4,652,654 + mhpA BNILDI_23110 0.62 +1.5 4,652,663 + mhpA BNILDI_23110 0.62 -1.8 4,652,663 + mhpA BNILDI_23110 0.62 -0.6 4,652,664 - mhpA BNILDI_23110 0.63 +0.6 4,652,945 + mhpA BNILDI_23110 0.79 +1.5 4,653,048 - mhpA BNILDI_23110 0.86 +0.2 4,653,190 + +1.6 4,653,245 + +0.0 4,653,246 - +1.0 4,653,387 + +0.1 4,653,533 + mhpR BNILDI_23115 0.18 -0.3 4,653,655 + mhpR BNILDI_23115 0.31 -3.5 4,653,713 + mhpR BNILDI_23115 0.37 -0.4 4,654,003 + mhpR BNILDI_23115 0.67 -1.3 4,654,004 - mhpR BNILDI_23115 0.68 -1.3 4,654,114 - mhpR BNILDI_23115 0.79 -0.2 4,654,168 + mhpR BNILDI_23115 0.85 -1.5 4,654,168 + mhpR BNILDI_23115 0.85 +0.6 4,654,169 - mhpR BNILDI_23115 0.85 -1.0 4,654,169 - mhpR BNILDI_23115 0.85 +1.3 4,654,169 - mhpR BNILDI_23115 0.85 -0.1 4,654,170 + mhpR BNILDI_23115 0.85 +2.0
Or see this region's nucleotide sequence