Strain Fitness in Escherichia coli ECRC62 around BNILDI_19040

Experiment: Control_ECRC62

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntbluR and ycgX are separated by 220 nucleotidesycgX and ymgK are separated by 398 nucleotides BNILDI_19035: bluR - DNA-binding transcriptional repressor BluR, at 3,826,538 to 3,827,269 bluR BNILDI_19040: ycgX - Uncharacterized protein YcgX, at 3,827,490 to 3,827,894 ycgX BNILDI_19045: ymgK - Protein YmgK, at 3,828,293 to 3,828,337 ymgK Position (kb) 3827 3828Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3826.501 kb on + strandat 3826.544 kb on + strandat 3826.547 kb on + strandat 3826.678 kb on - strand, within bluRat 3826.678 kb on - strand, within bluRat 3826.707 kb on + strand, within bluRat 3826.957 kb on + strand, within bluRat 3826.958 kb on - strand, within bluRat 3826.958 kb on - strand, within bluRat 3826.983 kb on - strand, within bluRat 3827.092 kb on - strand, within bluRat 3827.303 kb on + strandat 3827.401 kb on - strandat 3827.434 kb on + strandat 3827.598 kb on + strand, within ycgXat 3827.760 kb on + strand, within ycgXat 3828.216 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC62
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3,826,501 + -0.8
3,826,544 + -0.1
3,826,547 + +0.3
3,826,678 - bluR BNILDI_19035 0.19 -0.6
3,826,678 - bluR BNILDI_19035 0.19 +2.5
3,826,707 + bluR BNILDI_19035 0.23 -0.0
3,826,957 + bluR BNILDI_19035 0.57 +0.6
3,826,958 - bluR BNILDI_19035 0.57 -2.2
3,826,958 - bluR BNILDI_19035 0.57 -0.3
3,826,983 - bluR BNILDI_19035 0.61 -1.8
3,827,092 - bluR BNILDI_19035 0.76 -1.2
3,827,303 + -1.8
3,827,401 - -1.1
3,827,434 + -0.4
3,827,598 + ycgX BNILDI_19040 0.27 +5.2
3,827,760 + ycgX BNILDI_19040 0.67 -1.7
3,828,216 + +1.1

Or see this region's nucleotide sequence